Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010384

Physical Location & Seq

Genomic Coordinates Forward (+)

35790705 .. 35794820

Gene Structure 4116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1264300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTCACCTTGGGCTTGATCAAGCAACCGCACAGCCCAACTCCGTCGCATCACCCACAGTACTCGCCAAAACGGCGGCGTCATCGCAGAGTGCACGCCACTGTCTTATCATCAATCGTCACTGTGCCCACCTCCCACTCACCCCACCGACGCCGTAAGGCCCGAAGCGAAGAAACACGGCAAAGAAAACTAACAACTCTCAGCAGTCTCTCTCGTTTTCTTCCTCCGCCAACTGGGGAAATGGTGTTGAAGGTCCAACAAAGTGAGGGGAAAAGGAGGTCAGCAAGGTTAAGCAGCATAAACTCGGAGGGAAAGAGAATCGTTTCAGTAAAGAAGACTAAAACCAAGCAGAAGAAGAAAAGTGCTAGACTTGATTCCAAGATACCGAAGAAACCGCCAACTGCTTTCTTCTATTTCTTGGAGGATTATCGTAAGGATTTTCAAGAGCAAAATCCAGGTGTCAAGCAAATGCGTGAAATTGGAAAGGCGGGTGGAGAGAAGTGGAATACAATGGCATATGAGGAAAAGGTTCAATATTATGATATAGCCACGGAGAAACGAGCTGAGTTTGAGAAGGCCATGGCAGAATATGCACAAAGAAAGGATAGTGGGGAGGATGAAGAAACCGAGGATGATGAAGAGGAAGATTGGTCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box

Protein Analysis

220

Amino Acids

25.46

Weight (kDa)

9.83

Isoelectric Point (pI)

75.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	128 - 197	9.7e-12	HMG-box domain
HMG_box	PF00505	129 - 197	3.1e-16	HMG (high mobility group) box
HMG_WDHD1	PF24815	132 - 179	5e-10	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34450 AT2G34450 AT2G34450 AT2G34450
fragaria_vesca	FvH4_3g05880
malus_domestica	MD05G1286800.v1.1 MD10G1264300.v1.1
prunus_persica	Prupe.4G078100_v2.0.a1 Prupe.4G078100_v2.0.a1
pyrus_communis	pycom05g26520
rosa_chinensis	RchiOBHm_Chr5g0013561
rosa_laevigata	RLG00000032028
rosa_multiflora	Rmu_sc0002573.1_g000020 Rmu_sc0003458.1_g000025
rosa_roxburghii	Rroxscaffold_1G00063010
rosa_rugosa	Rorug05G0011000
rosa_samantha	Rh5AG105600 Rh5BG101900 Rh5CG113700 Rh5DG100400
rosa_wichuraiana	Rw5G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	29, 76, 227, 395, 488
AcyI	GRCGYC	2 cut(s)	79, 151
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	250, 443, 533
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	212
Alw44I	GTGCAC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	159, 576
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	294
Asp700I	GAANNNNTTC	2 cut(s)	322, 528
AspS9I	GGNCC	2 cut(s)	160, 253
AsuHPI	GGTGA	2 cut(s)	44, 132
AvaII	GGWCC	1 cut(s)	253
BaeGI	GKGCMC	2 cut(s)	96, 129
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	306
BceAI	ACGGC	3 cut(s)	89, 138, 194
BciT130I	CCWGG	1 cut(s)	456
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	73
BisI	GCNGC	2 cut(s)	77, 295
BlsI	GCNGC	2 cut(s)	78, 296
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	160, 253
BmrFI	CCNGG	1 cut(s)	456
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	341
BsaHI	GRCGYC	2 cut(s)	79, 151
BsaJI	CCNNGG	4 cut(s)	9, 549, 579, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	9, 549, 579, 627
BseGI	GGATG	2 cut(s)	622, 637
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	214, 555
BseNI	ACTGG	1 cut(s)	238
BseSI	GKGCMC	2 cut(s)	96, 129
BseXI	GCAGC	1 cut(s)	306
BshFI	GGCC	2 cut(s)	161, 578
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	161, 578
Bsp1286I	GDGCHC	2 cut(s)	96, 129
Bsp143I	GATC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	5 cut(s)	29, 76, 227, 395, 488
BspANI	GGCC	2 cut(s)	161, 578
BspCNI	CTCAG	2 cut(s)	213, 556
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	9, 549, 579, 627
BssMI	GATC	1 cut(s)	18
BssNI	GRCGYC	2 cut(s)	79, 151
BssT1I	CCWWGG	2 cut(s)	9, 579
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	60, 103, 124
Bst6I	CTCTTC	1 cut(s)	633
BstACI	GRCGYC	2 cut(s)	79, 151
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	200, 564
BstDSI	CCRYGG	2 cut(s)	549, 579
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	622, 637
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 590
BstNI	CCWGG	1 cut(s)	456
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	454
BstSLI	GKGCMC	2 cut(s)	96, 129
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	161, 578
BtgI	CCRYGG	2 cut(s)	549, 579
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	622, 637
BtsIMutI	CAGTG	2 cut(s)	99, 120
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	160, 253
CseI	GACGC	2 cut(s)	68, 159
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	580
CviJI	RGCY	6 cut(s)	15, 36, 161, 548, 563, 578
CviKI_1	RGCY	6 cut(s)	15, 36, 161, 548, 563, 578
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	200, 564
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
EciI	GGCGGA	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	9, 579
Eco47I	GGWCC	1 cut(s)	253
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	9, 579
ErhI	CCWWGG	2 cut(s)	9, 579
FaeI	CATG	1 cut(s)	583
FaiI	YATR	7 cut(s)	299, 517, 519, 540, 545, 581, 591
FatI	CATG	1 cut(s)	579
FauI	CCCGC	1 cut(s)	481
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	77, 295
FokI	GGATG	2 cut(s)	629, 644
Fsp4HI	GCNGC	2 cut(s)	77, 295
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	2 cut(s)	77, 295
HaeIII	GGCC	2 cut(s)	161, 578
HgaI	GACGC	2 cut(s)	68, 159
Hin1I	GRCGYC	2 cut(s)	79, 151
Hin1II	CATG	1 cut(s)	583
HinfI	GANTC	2 cut(s)	318, 374
HphI	GGTGA	2 cut(s)	44, 132
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	307, 655
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	49, 153
HpyAV	CCTTC	2 cut(s)	244, 568
HpyCH4III	ACNGT	3 cut(s)	60, 103, 124
HpyCH4V	TGCA	2 cut(s)	94, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 590
HpyF3I	CTNAG	2 cut(s)	200, 564
Hsp92I	GRCGYC	2 cut(s)	79, 151
Hsp92II	CATG	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	3 cut(s)	219, 441, 468
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	4, 118
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	96, 129
MluCI	AATT	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	280
MroXI	GAANNNNTTC	2 cut(s)	322, 528
MseI	TTAA	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	73, 590
NcoI	CCATGG	1 cut(s)	579
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	583
NmuCI	GTSAC	2 cut(s)	4, 118
PdmI	GAANNNNTTC	2 cut(s)	322, 528
PfeI	GAWTC	2 cut(s)	318, 374
PkrI	GCNGC	2 cut(s)	78, 296
Psp6I	CCWGG	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	160, 253
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	77, 295
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	160, 253
ScaI	AGTACT	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	2 cut(s)	96, 129
SetI	ASST	8 cut(s)	11, 134, 255, 281, 290, 460, 531, 565
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	5 cut(s)	29, 76, 227, 395, 488
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	2 cut(s)	9, 579
TaaI	ACNGT	3 cut(s)	60, 103, 124
TasI	AATT	1 cut(s)	477
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	318, 374
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	2 cut(s)	106, 127
TseFI	GTSAC	2 cut(s)	4, 118
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	2 cut(s)	4, 118
TspDTI	ATGAA	2 cut(s)	633, 651
TspGWI	ACGGA	2 cut(s)	33, 566
TspRI	CASTG	2 cut(s)	106, 127
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	253
XmnI	GAANNNNTTC	2 cut(s)	322, 528
XspI	CTAG	1 cut(s)	366
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.