Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010384

Physical Location & Seq

Genomic Coordinates Forward (+)

41946950 .. 41950001

Gene Structure 3052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1286800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAAAGAAAACTAGCAACTCCCAGCAGTCTCCCTCGTCTTCTTCCTCCGCCACAAAAGCTTCAACTGGGGAAATGGTGTTGAAGGTCCAACAAAGTGAGGGGACAAGGAGGTCAACAAGGTTAAGCAGTGTAAACGCGGAGGGAAAGAGAATCGTTTCAGTAAAGAAGTCCAAAACCAAGCAGAAGAAGAAAAGTGCAAAAGTTGATTCCAAGATACCCAAGAAACCGCCAACTGCTTTCTTCTATTTCCTGGAGGATTATCGTAAGGAACTTCAAGAGCAAAATCCAGGTATCAAGCAAATGCGCGAAATTGGAAAGGTGTGTGGAGAGAAGTGGAAAACAATGACATATGAGGAAAAGGTTCAGTATTATGATATAGCCACGGAGAAACGAGCTGAGTTTGAGAAGGCCATGGCAGAATATGCACAAAGAAAGGAAAGTGGCGAGGATGAAGAAACCGAGGATGAGGAAGAGGAAGATTGGTCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box

Protein Analysis

165

Amino Acids

18.8

Weight (kDa)

8.95

Isoelectric Point (pI)

63.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	73 - 142	2.4e-14	HMG-box domain
HMG_box	PF00505	74 - 142	2.7e-18	HMG (high mobility group) box
HMG_WDHD1	PF24815	77 - 124	5.1e-10	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34450 AT2G34450 AT2G34450 AT2G34450
fragaria_vesca	FvH4_3g05880
malus_domestica	MD05G1286800.v1.1 MD10G1264300.v1.1
prunus_persica	Prupe.4G078100_v2.0.a1 Prupe.4G078100_v2.0.a1
pyrus_communis	pycom05g26520
rosa_chinensis	RchiOBHm_Chr5g0013561
rosa_laevigata	RLG00000032028
rosa_multiflora	Rmu_sc0002573.1_g000020 Rmu_sc0003458.1_g000025
rosa_roxburghii	Rroxscaffold_1G00063010
rosa_rugosa	Rorug05G0011000
rosa_samantha	Rh5AG105600 Rh5BG101900 Rh5CG113700 Rh5DG100400
rosa_wichuraiana	Rw5G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	112
AccII	CGCG	2 cut(s)	140, 309
AciI	CCGC	3 cut(s)	51, 140, 230
AgsI	TTSAA	3 cut(s)	66, 85, 278
AjnI	CCWGG	2 cut(s)	252, 289
AluBI	AGCT	2 cut(s)	62, 398
AluI	AGCT	2 cut(s)	62, 398
Alw26I	GTCTC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	411
Asp700I	GAANNNNTTC	2 cut(s)	157, 363
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	254, 291
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	254, 291
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	254, 291
BmrI	ACTGGG	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	275
BsaJI	CCNNGG	3 cut(s)	384, 414, 462
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	254, 291
BseDI	CCNNGG	3 cut(s)	384, 414, 462
BseGI	GGATG	2 cut(s)	457, 472
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	140, 309
BshFI	GGCC	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	413
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	3 cut(s)	51, 140, 230
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	2 cut(s)	140, 309
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	384, 414, 462
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	254, 291
Bst6I	CTCTTC	1 cut(s)	468
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	2 cut(s)	384, 414
BstF5I	GGATG	2 cut(s)	457, 472
BstFNI	CGCG	2 cut(s)	140, 309
BstHHI	GCGC	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 425
BstNI	CCWGG	2 cut(s)	254, 291
BstSCI	CCNGG	2 cut(s)	252, 289
BstUI	CGCG	2 cut(s)	140, 309
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	413
BtgI	CCRYGG	2 cut(s)	384, 414
BtsCI	GGATG	2 cut(s)	457, 472
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	88
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	4 cut(s)	62, 383, 398, 413
CviKI_1	RGCY	4 cut(s)	62, 383, 398, 413
DdeI	CTNAG	1 cut(s)	399
DrdI	GACNNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	252, 289
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	1 cut(s)	418
FaiI	YATR	6 cut(s)	352, 354, 375, 380, 416, 426
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	1 cut(s)	414
FauNDI	CATATG	1 cut(s)	352
FokI	GGATG	2 cut(s)	464, 479
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	308
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	2 cut(s)	153, 209
Hpy166II	GTNNAC	2 cut(s)	117, 136
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	2 cut(s)	117, 136
HpyAV	CCTTC	2 cut(s)	79, 403
HpyCH4V	TGCA	2 cut(s)	200, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 425
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	1 cut(s)	307
LpnPI	CCDG	6 cut(s)	38, 54, 239, 266, 276, 303
MaeI	CTAG	1 cut(s)	15
MboII	GAAGA	8 cut(s)	33, 36, 199, 202, 235, 467, 485, 491
MluCI	AATT	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	115
MroXI	GAANNNNTTC	2 cut(s)	157, 363
MseI	TTAA	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	254, 291
MvaI	CCWGG	2 cut(s)	254, 291
MvnI	CGCG	2 cut(s)	140, 309
MwoI	GCNNNNNNNGC	2 cut(s)	59, 425
NcoI	CCATGG	1 cut(s)	414
NdeI	CATATG	1 cut(s)	352
NlaIII	CATG	1 cut(s)	418
PdmI	GAANNNNTTC	2 cut(s)	157, 363
PfeI	GAWTC	2 cut(s)	153, 209
PfoI	TCCNGGA	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	252, 289
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	252, 289
PspPI	GGNCC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	125
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	254, 291
SetI	ASST	8 cut(s)	64, 90, 116, 125, 295, 324, 366, 400
SinI	GGWCC	1 cut(s)	88
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	3 cut(s)	51, 140, 230
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	252, 289
StyI	CCWWGG	1 cut(s)	414
TasI	AATT	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	153, 209
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	468
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	88
XmnI	GAANNNNTTC	2 cut(s)	157, 363
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.