AT2G34585

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016522
Physical Location & Seq
Reverse (-)
14567966 .. 14568799
834 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34585.1

Sequence Viewer

Length: 246 bp
ATGGCGGCGATAACAAGCGCGGTGATAGCAATAGCCGGAATAATCTTGGGATGGATAACGATAGAGTTAGCTTGTAAGCCTTGCCTGGAGTCGGGCCGTGAAGCCATCGACAGATCTCTCAATCCCGATTACGATCCTGATGACCAAGACGTCGACTCATCTTCCGATGTTCGTGCTCCTCTCATCCCTAATCATCCTCCCGATAATTCCGATCCTGATCCCACCACCGCGATCAAGTCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.57

Weight (kDa)

4.05

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34585
fragaria_vesca FvH4_3g05470
malus_domestica MD05G1283100.v1.1 MD10G1261400.v1.1
prunus_persica Prupe.4G081500_v2.0.a1
pyrus_communis pycom10g21760
rosa_chinensis RchiOBHm_Chr5g0014281
rosa_multiflora Rmu_sc0009295.1_g000010
rosa_roxburghii Rroxscaffold_1G00062290
rosa_rugosa Rorug05G0016800
rosa_samantha Rh5BG108400 Rh5CG120000 Rh5DG107000
rosa_wichuraiana Rw5G009700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AatII GACGTC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 153
AccII CGCG 2 cut(s) 20, 230
AciI CCGC 3 cut(s) 5, 20, 228
AclWI GGATC 3 cut(s) 128, 206, 212
AcyI GRCGYC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 91
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 178
AlwI GGATC 3 cut(s) 128, 206, 212
AoxI GGCC 1 cut(s) 94
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 2 cut(s) 45, 113
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 86
BglII AGATCT 1 cut(s) 113
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 107
BsaBI GATNNNNATC 2 cut(s) 132, 216
BsaHI GRCGYC 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse8I GATNNNNATC 2 cut(s) 132, 216
BseBI CCWGG 1 cut(s) 86
BseGI GGATG 3 cut(s) 56, 183, 193
BseJI GATNNNNATC 2 cut(s) 132, 216
BseLI CCNNNNNNNGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 168
Bsh1236I CGCG 2 cut(s) 20, 230
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 91
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 5 cut(s) 113, 133, 211, 217, 231
BspACI CCGC 3 cut(s) 5, 20, 228
BspANI GGCC 1 cut(s) 96
BspFNI CGCG 2 cut(s) 20, 230
BspPI GGATC 3 cut(s) 128, 206, 212
BssMI GATC 5 cut(s) 113, 133, 211, 217, 231
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 150
BstF5I GGATG 3 cut(s) 56, 183, 193
BstFNI CGCG 2 cut(s) 20, 230
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 5 cut(s) 116, 136, 214, 220, 234
BstMBI GATC 5 cut(s) 113, 133, 211, 217, 231
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstUI CGCG 2 cut(s) 20, 230
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 3 cut(s) 56, 183, 193
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 94
CviJI RGCY 5 cut(s) 35, 71, 79, 96, 104
CviKI_1 RGCY 5 cut(s) 35, 71, 79, 96, 104
DpnI GATC 5 cut(s) 115, 135, 213, 219, 233
DpnII GATC 5 cut(s) 113, 133, 211, 217, 231
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 84
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 63, 170, 180
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 89, 155
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 166, 211, 245
Hpy188III TCNNGA 4 cut(s) 125, 137, 200, 215
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 5 cut(s) 113, 133, 211, 217, 231
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 49, 71, 98, 150, 228
MaeII ACGT 1 cut(s) 150
MalI GATC 5 cut(s) 115, 135, 213, 219, 233
MboI GATC 5 cut(s) 113, 133, 211, 217, 231
MboII GAAGA 1 cut(s) 153
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 205
MlyI GAGTC 2 cut(s) 98, 149
MnlI CCTC 2 cut(s) 189, 207
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 2 cut(s) 20, 230
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 5 cut(s) 113, 133, 211, 217, 231
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 97, 149
PpsI GAGTC 2 cut(s) 97, 149
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspPI GGNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 113
SalI GTCGAC 1 cut(s) 152
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 113, 133, 211, 217, 231
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 2 cut(s) 98, 149
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 178
SetI ASST 2 cut(s) 73, 153
Sse9I AATT 1 cut(s) 205
SsiI CCGC 3 cut(s) 5, 20, 228
StyD4I CCNGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 108, 153
TasI AATT 1 cut(s) 205
TauI GCSGC 1 cut(s) 8
TspGWI ACGGA 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 153
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.