Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016522

Physical Location & Seq

Genomic Coordinates Forward (+)

3199428 .. 3200114

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGCGCAATAACAAGCGCAGTGATAGCAATAGCGGGAGTGGTGCTGGGCTGGATCACCATCGAGATCGCCTGCAAGCCGTGCCTCGAACAAGGCCGCGAAGCCATCGATCGTAATCTCAATCCCGATTACGACCCCGACGACATCCGCGCCCCTCTCAACCCCGCCTCCGCCGTCACCAATGTGGAGGTCCACGGCGGCGACGACGACGATAATCCCAGGGCCGCGGTTTCTTCGATTACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

8.6

Weight (kDa)

4.26

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34585
fragaria_vesca	FvH4_3g05470
malus_domestica	MD05G1283100.v1.1 MD10G1261400.v1.1
prunus_persica	Prupe.4G081500_v2.0.a1
pyrus_communis	pycom10g21760
rosa_chinensis	RchiOBHm_Chr5g0014281
rosa_multiflora	Rmu_sc0009295.1_g000010
rosa_roxburghii	Rroxscaffold_1G00062290
rosa_rugosa	Rorug05G0016800
rosa_samantha	Rh5BG108400 Rh5CG120000 Rh5DG107000
rosa_wichuraiana	Rw5G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	99, 150, 227
AciI	CCGC	8 cut(s)	35, 97, 148, 165, 171, 198, 225, 227
AclWI	GGATC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	218
AleI	CACNNNNGTG	1 cut(s)	182
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	2 cut(s)	94, 222
AspLEI	GCGC	3 cut(s)	8, 20, 152
AspS9I	GGNCC	2 cut(s)	190, 222
AsuHPI	GGTGA	2 cut(s)	49, 169
AvaII	GGWCC	1 cut(s)	190
BccI	CCATC	2 cut(s)	68, 113
BceAI	ACGGC	3 cut(s)	64, 158, 211
BciT130I	CCWGG	1 cut(s)	220
BisI	GCNGC	3 cut(s)	97, 199, 225
BlsI	GCNGC	3 cut(s)	98, 200, 226
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	190, 222
BmrFI	CCNGG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	108
BsaBI	GATNNNNATC	2 cut(s)	59, 114
BsaJI	CCNNGG	4 cut(s)	193, 218, 219, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse8I	GATNNNNATC	2 cut(s)	59, 114
BseBI	CCWGG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	4 cut(s)	193, 218, 219, 225
BseGI	GGATG	1 cut(s)	144
BseJI	GATNNNNATC	2 cut(s)	59, 114
BseYI	CCCAGC	1 cut(s)	46
Bsh1236I	CGCG	3 cut(s)	99, 150, 227
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	96, 224
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	112
BsnI	GGCC	2 cut(s)	96, 224
Bsp143I	GATC	3 cut(s)	54, 66, 109
BspACI	CCGC	8 cut(s)	35, 97, 148, 165, 171, 198, 225, 227
BspANI	GGCC	2 cut(s)	96, 224
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	3 cut(s)	99, 150, 227
BspPI	GGATC	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	193, 218, 219, 225
BssMI	GATC	3 cut(s)	54, 66, 109
Bst2UI	CCWGG	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	73, 77
BstDSI	CCRYGG	2 cut(s)	193, 225
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	3 cut(s)	99, 150, 227
BstHHI	GCGC	3 cut(s)	8, 20, 152
BstKTI	GATC	3 cut(s)	57, 69, 112
BstMBI	GATC	3 cut(s)	54, 66, 109
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 81
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	3 cut(s)	99, 150, 227
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	96, 224
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	2 cut(s)	193, 225
BtsCI	GGATG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	73, 77
CfoI	GCGC	3 cut(s)	8, 20, 152
Cfr13I	GGNCC	2 cut(s)	190, 222
Cfr42I	CCGCGG	1 cut(s)	228
ClaI	ATCGAT	1 cut(s)	108
CviJI	RGCY	5 cut(s)	51, 79, 96, 104, 224
CviKI_1	RGCY	5 cut(s)	51, 79, 96, 104, 224
DpnI	GATC	3 cut(s)	56, 68, 111
DpnII	GATC	3 cut(s)	54, 66, 109
EciI	GGCGGA	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	218
FauI	CCCGC	2 cut(s)	28, 172
Fnu4HI	GCNGC	3 cut(s)	97, 199, 225
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	97, 199, 225
GlaI	GCGC	3 cut(s)	7, 19, 151
GluI	GCNGC	3 cut(s)	97, 199, 225
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	96, 224
HhaI	GCGC	3 cut(s)	8, 20, 152
Hin6I	GCGC	3 cut(s)	6, 18, 150
HinP1I	GCGC	3 cut(s)	6, 18, 150
HphI	GGTGA	2 cut(s)	49, 169
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	64, 125
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	4 cut(s)	143, 206, 209, 212
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 81
HspAI	GCGC	3 cut(s)	6, 18, 150
KspI	CCGCGG	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	54, 66, 109
LpnPI	CCDG	5 cut(s)	32, 37, 85, 205, 232
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	3 cut(s)	56, 68, 111
MboI	GATC	3 cut(s)	54, 66, 109
MboII	GAAGA	1 cut(s)	225
MnlI	CCTC	4 cut(s)	95, 165, 178, 181
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	3 cut(s)	99, 150, 227
MwoI	GCNNNNNNNGC	2 cut(s)	26, 81
NdeII	GATC	3 cut(s)	54, 66, 109
NmuCI	GTSAC	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	182
PasI	CCCWGGG	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 201
PkrI	GCNGC	3 cut(s)	98, 200, 226
Ple19I	CGATCG	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	190, 222
PvuI	CGATCG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	182
SacII	CCGCGG	1 cut(s)	228
SatI	GCNGC	3 cut(s)	97, 199, 225
Sau3AI	GATC	3 cut(s)	54, 66, 109
Sau96I	GGNCC	2 cut(s)	190, 222
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	1 cut(s)	192
Sfr303I	CCGCGG	1 cut(s)	228
SgrBI	CCGCGG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	182
SsiI	CCGC	8 cut(s)	35, 97, 148, 165, 171, 198, 225, 227
StyD4I	CCNGG	1 cut(s)	218
TaqI	TCGA	4 cut(s)	63, 87, 108, 236
TauI	GCSGC	3 cut(s)	99, 201, 227
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.