Rw5G009700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016522
Physical Location & Seq
Reverse (-)
10453617 .. 10454076
460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009700.1

Sequence Viewer

Length: 261 bp
ATGGGAGCGATAACAAGCGCAGCGATAGCCATAGTGGCAGTGGTGCTCGGCTGGATCACCATCGAGATTGCCTGCAAGCCTTGCCTCGAACAAGGCCGCCAAGCCATCGATCGCAATCTCAATCCCGATTACGACCCCGACGACGCCGTTTCGTCCGACATCCGCGCCCCTCTCAACCCCGCAGCCGTCACGAATGTGGAGGTCCACGGCGACGATGACGACGCTCATCCCAAGGCCGCTGTCTCTTCCATCACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

8.99

Weight (kDa)

4.36

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34585
fragaria_vesca FvH4_3g05470
malus_domestica MD05G1283100.v1.1 MD10G1261400.v1.1
prunus_persica Prupe.4G081500_v2.0.a1
pyrus_communis pycom10g21760
rosa_chinensis RchiOBHm_Chr5g0014281
rosa_multiflora Rmu_sc0009295.1_g000010
rosa_roxburghii Rroxscaffold_1G00062290
rosa_rugosa Rorug05G0016800
rosa_samantha Rh5BG108400 Rh5CG120000 Rh5DG107000
rosa_wichuraiana Rw5G009700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 165
AciI CCGC 4 cut(s) 97, 163, 180, 237
AclWI GGATC 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 258
AleI CACNNNNGTG 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 1 cut(s) 62
AoxI GGCC 2 cut(s) 94, 234
ApeKI GCWGC 2 cut(s) 20, 182
AspLEI GCGC 2 cut(s) 20, 167
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 49, 244
AvaII GGWCC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 32, 194
BccI CCATC 3 cut(s) 68, 113, 257
BceAI ACGGC 3 cut(s) 131, 170, 223
BcoDI GTCTC 1 cut(s) 247
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 4 cut(s) 21, 97, 183, 237
BlsI GCNGC 4 cut(s) 22, 98, 184, 238
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 2 cut(s) 59, 114
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 205, 231
Bse8I GATNNNNATC 2 cut(s) 59, 114
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 205, 231
BseGI GGATG 2 cut(s) 159, 226
BseJI GATNNNNATC 2 cut(s) 59, 114
BseXI GCAGC 2 cut(s) 32, 194
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 96, 236
BshVI ATCGAT 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 247
BsnI GGCC 2 cut(s) 96, 236
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 54, 109
BspACI CCGC 4 cut(s) 97, 163, 180, 237
BspANI GGCC 2 cut(s) 96, 236
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 1 cut(s) 165
BspPI GGATC 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 205, 231
BssMI GATC 2 cut(s) 54, 109
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 73, 77
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 2 cut(s) 159, 226
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 2 cut(s) 20, 167
BstKTI GATC 2 cut(s) 57, 112
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 54, 109
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 26, 35, 81
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 32, 194
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 2 cut(s) 96, 236
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 2 cut(s) 159, 226
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 73, 77
CfoI GCGC 2 cut(s) 20, 167
Cfr13I GGNCC 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 2 cut(s) 152, 230
CviJI RGCY 7 cut(s) 29, 51, 79, 96, 104, 185, 236
CviKI_1 RGCY 7 cut(s) 29, 51, 79, 96, 104, 185, 236
DpnI GATC 2 cut(s) 56, 111
DpnII GATC 2 cut(s) 54, 109
DraIII CACNNNGTG 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaiI YATR 1 cut(s) 32
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 4 cut(s) 21, 97, 183, 237
FokI GGATG 2 cut(s) 146, 213
Fsp4HI GCNGC 4 cut(s) 21, 97, 183, 237
GlaI GCGC 2 cut(s) 19, 166
GluI GCNGC 4 cut(s) 21, 97, 183, 237
HaeIII GGCC 2 cut(s) 96, 236
HgaI GACGC 2 cut(s) 152, 230
HhaI GCGC 2 cut(s) 20, 167
Hin1I GRCGYC 1 cut(s) 144
Hin6I GCGC 2 cut(s) 18, 165
HinP1I GCGC 2 cut(s) 18, 165
HphI GGTGA 2 cut(s) 49, 244
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 3 cut(s) 64, 125, 190
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 4 cut(s) 143, 146, 215, 224
HpyCH4V TGCA 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 35, 81
Hsp92I GRCGYC 1 cut(s) 144
HspAI GCGC 2 cut(s) 18, 165
Kzo9I GATC 2 cut(s) 54, 109
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 2 cut(s) 37, 85
Lsp1109I GCAGC 2 cut(s) 32, 194
MaeIII GTNAC 1 cut(s) 187
MalI GATC 2 cut(s) 56, 111
MboI GATC 2 cut(s) 54, 109
MboII GAAGA 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 3 cut(s) 95, 180, 193
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 239
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 26, 35, 81
NdeII GATC 2 cut(s) 54, 109
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PkrI GCNGC 4 cut(s) 22, 98, 184, 238
Ple19I CGATCG 1 cut(s) 112
PspPI GGNCC 1 cut(s) 202
PvuI CGATCG 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 194
SatI GCNGC 4 cut(s) 21, 97, 183, 237
Sau3AI GATC 2 cut(s) 54, 109
Sau96I GGNCC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 48
SetI ASST 1 cut(s) 204
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 194
SsiI CCGC 4 cut(s) 97, 163, 180, 237
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 3 cut(s) 63, 87, 108
TauI GCSGC 2 cut(s) 99, 239
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 20, 182
Tsp45I GTSAC 1 cut(s) 187
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.