Prupe.4G081500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016522
Physical Location & Seq
Reverse (-)
3975031 .. 3975480
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G081500.1

Sequence Viewer

Length: 267 bp
ATGGGAGCGATAACCAGCGCAGTGATAGCGATAGTGGGGGTGGTGCTGGGTTGGATAACCATCGAGATTGCCTGCAAGCCTTGCCTTGAGCAAGGCCGCCAAGCCATCGATCGCAATCTTAACCCCGACTACGATCCCGATGACGACGTCGTTTCCTCTGATATCCGCGCCCCTCTCAACCCTAACTCCACCGCTACCACCATCCATGTCGAGGTGGAGGAAGATCCCAAGGCCGCTGCTACCTCCGATGCTCTCAAGGCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.27

Weight (kDa)

4.21

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34585
fragaria_vesca FvH4_3g05470
malus_domestica MD05G1283100.v1.1 MD10G1261400.v1.1
prunus_persica Prupe.4G081500_v2.0.a1
pyrus_communis pycom10g21760
rosa_chinensis RchiOBHm_Chr5g0014281
rosa_multiflora Rmu_sc0009295.1_g000010
rosa_roxburghii Rroxscaffold_1G00062290
rosa_rugosa Rorug05G0016800
rosa_samantha Rh5BG108400 Rh5CG120000 Rh5DG107000
rosa_wichuraiana Rw5G009700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccII CGCG 1 cut(s) 168
AciI CCGC 4 cut(s) 97, 166, 192, 234
AclWI GGATC 2 cut(s) 128, 218
AcyI GRCGYC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 211
AlwI GGATC 2 cut(s) 128, 218
AoxI GGCC 3 cut(s) 94, 231, 258
ApeKI GCWGC 1 cut(s) 236
AspLEI GCGC 2 cut(s) 20, 170
BbvI GCAGC 1 cut(s) 223
BccI CCATC 3 cut(s) 68, 113, 209
BceAI ACGGC 1 cut(s) 245
BisI GCNGC 3 cut(s) 97, 234, 237
BlsI GCNGC 3 cut(s) 98, 235, 238
BmsI GCATC 1 cut(s) 238
BpuEI CTTGAG 2 cut(s) 107, 239
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 2 cut(s) 59, 114
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse8I GATNNNNATC 2 cut(s) 59, 114
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 201
BseJI GATNNNNATC 2 cut(s) 59, 114
BseLI CCNNNNNNNGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 96, 233, 260
BshVI ATCGAT 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 211
BsnI GGCC 3 cut(s) 96, 233, 260
Bsp143I GATC 3 cut(s) 109, 133, 223
BspACI CCGC 4 cut(s) 97, 166, 192, 234
BspANI GGCC 3 cut(s) 96, 233, 260
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 1 cut(s) 168
BspPI GGATC 2 cut(s) 128, 218
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 3 cut(s) 109, 133, 223
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 73, 77
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 2 cut(s) 20, 170
BstKTI GATC 3 cut(s) 112, 136, 226
BstMBI GATC 3 cut(s) 109, 133, 223
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 26, 81, 257
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 3 cut(s) 96, 233, 260
BsuTUI ATCGAT 1 cut(s) 108
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 73, 77
CfoI GCGC 2 cut(s) 20, 170
ClaI ATCGAT 1 cut(s) 108
CviAII CATG 1 cut(s) 206
CviJI RGCY 5 cut(s) 79, 96, 104, 233, 260
CviKI_1 RGCY 5 cut(s) 79, 96, 104, 233, 260
DpnI GATC 3 cut(s) 111, 135, 225
DpnII GATC 3 cut(s) 109, 133, 223
Eco130I CCWWGG 1 cut(s) 228
Eco32I GATATC 1 cut(s) 163
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 209
FaiI YATR 1 cut(s) 207
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 97, 234, 237
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 97, 234, 237
GlaI GCGC 2 cut(s) 19, 169
GluI GCNGC 3 cut(s) 97, 234, 237
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 3 cut(s) 96, 233, 260
HhaI GCGC 2 cut(s) 20, 170
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 2 cut(s) 18, 168
HinP1I GCGC 2 cut(s) 18, 168
Hpy188I TCNGA 3 cut(s) 160, 247, 266
Hpy188III TCNNGA 2 cut(s) 64, 137
Hpy99I CGWCG 2 cut(s) 149, 152
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 81, 257
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 2 cut(s) 18, 168
Kzo9I GATC 3 cut(s) 109, 133, 223
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 28, 32, 85
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 238
MaeII ACGT 1 cut(s) 147
MalI GATC 3 cut(s) 111, 135, 225
MboI GATC 3 cut(s) 109, 133, 223
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 5 cut(s) 166, 183, 205, 211, 253
MseI TTAA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 236
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 26, 81, 257
NdeII GATC 3 cut(s) 109, 133, 223
NlaIII CATG 1 cut(s) 209
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 3 cut(s) 98, 235, 238
Ple19I CGATCG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 223
PsyI GACNNNGTC 1 cut(s) 146
PvuI CGATCG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 3 cut(s) 97, 234, 237
Sau3AI GATC 3 cut(s) 109, 133, 223
SetI ASST 3 cut(s) 150, 216, 245
SfaNI GCATC 1 cut(s) 238
SmlI CTYRAG 2 cut(s) 86, 254
SmoI CTYRAG 2 cut(s) 86, 254
SsiI CCGC 4 cut(s) 97, 166, 192, 234
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 63, 108, 210
TauI GCSGC 2 cut(s) 99, 236
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 236
TspRI CASTG 1 cut(s) 27
Tth111I GACNNNGTC 1 cut(s) 146
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.