AT2G34590

Pyruvate dehydrogenase E1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
14568802 .. 14571143
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34590.1

Sequence Viewer

Length: 1221 bp
ATGTCTGCGATACTCCAAGGAGCTGGAGCTGCAACGGCTCTCTCGCCGTTTAATTCTATCGATTCCAACAAACTCGTTGCTCCTTCTCGCTCTTCTCTTTCAGTGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCTTTGGTTCTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGACGAAGGCGGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGGACATGAGCTATTACTTTTCGAGGCTCTTCAAGAAGGTCTAGAAGAAGAGATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTAGGCCATTACGGAGGCTCATACAAAGTAACTAAAGGCCTAGCTGATAAGTTTGGCGATCTCAGGGTTCTGGACACTCCAATCTGTGAAAACGCCTTCACCGGTATGGGCATTGGAGCCGCCATGACAGGACTAAGACCCGTCATCGAAGGTATGAACATGGGGTTTCTACTCTTAGCCTTCAACCAAATCTCCAACAACTGTGGTATGCTTCACTATACATCCGGTGGTCAATTCACTATCCCGGTTGTTATCCGTGGGCCTGGAGGTGTGGGCCGGCAGCTCGGAGCCGAGCATTCCCAGCGTCTCGAGTCTTACTTCCAGTCAATCCCTGGGATCCAGATGGTGGCTTGCTCAACACCTTACAACGCTAAAGGATTGATGAAAGCGGCGATAAGAAGTGAGAATCCTGTGATTCTGTTTGAACACGTTCTGCTCTATAACCTCAAGGAGAGTATTCCGGATGAAGAATACATATGTAATCTGGAAGAAGCAGAAATGGTCAGACCCGGTGAACACATCACGATACTGACGTATTCAAGGATGAGGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGATCCAGAGGTTATCGACATAAGGTCGTTGAAGCCGTTTGATCTCTACACAATTGGAAACTCGGTGAAGAAGACACACCGGGTTTTGATTGTGGAGGAATGTATGAGAACGGGAGGAATCGGAGCCAGTTTGACGGCTGCAATAAACGAGAACTTTCATGATTACTTAGATGCTCCGGTGATGTGTTTGTCTTCTCAGGATGTCCCAACTCCTTACGCCGGTACATTGGAAGAATGGACGGTTGTTCAGCCAGCTCAGATCGTCACTGCCGTCGAACAACTTTGCCAGTAA

Protein Analysis

406

Amino Acids

44.01

Weight (kDa)

5.53

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transket_pyr PF02779 90 - 260 2.3e-44 Transketolase, pyrimidine binding domain
Transketolase_C PF02780 276 - 397 5.1e-37 Transketolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30120 AT2G34590
fragaria_vesca FvH4_3g05390
malus_domestica MD05G1282600.v1.1
prunus_persica Prupe.4G082200_v2.0.a1
pyrus_communis pycom05g26190
rosa_chinensis RchiOBHm_Chr5g0014341
rosa_laevigata RLG00000032100
rosa_multiflora Rmu_ssc0000422.1_g000047
rosa_roxburghii Rroxscaffold_1G00062240
rosa_rugosa Rorug05G0017400
rosa_samantha Rh5AG111700 Rh5BG108900 Rh5CG120700 Rh5DG107800
rosa_wichuraiana Rw5G009730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 885
AccB1I GGYRCC 1 cut(s) 885
AccB7I CCANNNNNTGG 1 cut(s) 682
AccIII TCCGGA 1 cut(s) 796
AciI CCGC 3 cut(s) 212, 456, 725
AclWI GGATC 5 cut(s) 139, 302, 667, 680, 926
AfaI GTAC 2 cut(s) 887, 1153
AfiI CCNNNNNNNGG 2 cut(s) 682, 1148
AflIII ACRYGT 2 cut(s) 313, 763
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 5 cut(s) 278, 520, 761, 876, 961
AhdI GACNNNNNGTC 1 cut(s) 952
AjnI CCWGG 3 cut(s) 244, 598, 667
AluBI AGCT 9 cut(s) 23, 29, 147, 167, 228, 256, 380, 619, 1184
AluI AGCT 9 cut(s) 23, 29, 147, 167, 228, 256, 380, 619, 1184
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 5 cut(s) 139, 302, 667, 680, 926
Ama87I CYCGRG 1 cut(s) 644
Aor13HI TCCGGA 1 cut(s) 796
AoxI GGCC 4 cut(s) 340, 373, 596, 610
ApeKI GCWGC 5 cut(s) 29, 221, 616, 902, 1067
AsiGI ACCGGT 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 765
Asp718I GGTACC 1 cut(s) 885
AspS9I GGNCC 2 cut(s) 596, 610
AsuC2I CCSGG 3 cut(s) 581, 846, 1010
AsuHPI GGTGA 6 cut(s) 341, 427, 860, 928, 1006, 1120
AvaI CYCGRG 1 cut(s) 644
BaeI ACNNNNGTAYC 2 cut(s) 854, 887
BamHI GGATCC 1 cut(s) 672
BanI GGYRCC 1 cut(s) 885
BanII GRGCYC 1 cut(s) 230
BbsI GAAGAC 2 cut(s) 1007, 1113
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 5 cut(s) 16, 208, 628, 889, 1054
BccI CCATC 2 cut(s) 292, 673
BceAI ACGGC 6 cut(s) 31, 51, 166, 949, 1080, 1184
BciT130I CCWGG 3 cut(s) 246, 600, 669
BcnI CCSGG 3 cut(s) 581, 846, 1010
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 3 cut(s) 156, 287, 377
BisI GCNGC 7 cut(s) 30, 222, 456, 617, 726, 903, 1068
BlsI GCNGC 7 cut(s) 31, 223, 457, 618, 727, 904, 1069
Bme1390I CCNGG 6 cut(s) 246, 581, 600, 669, 846, 1010
BmeRI GACNNNNNGTC 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 596, 610
BmiI GGNNCC 5 cut(s) 454, 625, 674, 887, 1054
BmrFI CCNGG 6 cut(s) 246, 581, 600, 669, 846, 1010
BmsI GCATC 1 cut(s) 1090
BpiI GAAGAC 2 cut(s) 1007, 1113
BpmI CTGGAG 2 cut(s) 45, 621
BpuEI CTTGAG 1 cut(s) 767
BpuMI CCSGG 3 cut(s) 581, 846, 1010
Bsa29I ATCGAT 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 16, 592, 667, 668
BsaWI WCCGGW 4 cut(s) 437, 560, 796, 1105
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 2 cut(s) 682, 1148
Bse118I RCCGGY 3 cut(s) 437, 612, 1148
Bse1I ACTGG 3 cut(s) 658, 1056, 1216
BseAI TCCGGA 1 cut(s) 796
BseBI CCWGG 3 cut(s) 246, 600, 669
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 4 cut(s) 16, 592, 667, 668
BseGI GGATG 4 cut(s) 557, 805, 885, 1135
BseLI CCNNNNNNNGG 2 cut(s) 682, 1148
BseMII CTCAG 4 cut(s) 168, 412, 1139, 1199
BseNI ACTGG 3 cut(s) 658, 1056, 1216
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 5 cut(s) 16, 208, 628, 889, 1054
BseYI CCCAGC 1 cut(s) 636
BshFI GGCC 4 cut(s) 342, 375, 598, 612
BshNI GGYRCC 1 cut(s) 885
BshTI ACCGGT 1 cut(s) 437
BshVI ATCGAT 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 644
BslFI GGGAC 1 cut(s) 1118
BslI CCNNNNNNNGG 2 cut(s) 682, 1148
BsmAI GTCTC 1 cut(s) 647
BsmBI CGTCTC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 1118
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 4 cut(s) 342, 375, 598, 612
BsoBI CYCGRG 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 796
Bsp143I GATC 7 cut(s) 131, 307, 394, 672, 931, 970, 1188
BspACI CCGC 3 cut(s) 212, 456, 725
BspANI GGCC 4 cut(s) 342, 375, 598, 612
BspCNI CTCAG 4 cut(s) 169, 411, 1138, 1198
BspDI ATCGAT 1 cut(s) 60
BspEI TCCGGA 1 cut(s) 796
BspHI TCATGA 1 cut(s) 1087
BspLI GGNNCC 5 cut(s) 454, 625, 674, 887, 1054
BspPI GGATC 5 cut(s) 139, 302, 667, 680, 926
BspQI GCTCTTC 2 cut(s) 97, 279
BspT107I GGYRCC 1 cut(s) 885
BsrFI RCCGGY 3 cut(s) 437, 612, 1148
BsrI ACTGG 3 cut(s) 658, 1056, 1216
BssAI RCCGGY 3 cut(s) 437, 612, 1148
BssECI CCNNGG 4 cut(s) 16, 592, 667, 668
BssMI GATC 7 cut(s) 131, 307, 394, 672, 931, 970, 1188
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 3 cut(s) 246, 600, 669
Bst4CI ACNGT 2 cut(s) 539, 1171
Bst6I CTCTTC 3 cut(s) 97, 279, 288
BstC8I GCNNGC 5 cut(s) 226, 614, 688, 900, 1182
BstDEI CTNAG 7 cut(s) 177, 398, 470, 511, 1096, 1125, 1185
BstDSI CCRYGG 1 cut(s) 592
BstF5I GGATG 4 cut(s) 557, 805, 885, 1135
BstKTI GATC 7 cut(s) 134, 310, 397, 675, 934, 973, 1191
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 7 cut(s) 131, 307, 394, 672, 931, 970, 1188
BstMWI GCNNNNNNNGC 4 cut(s) 29, 35, 218, 637
BstNI CCWGG 3 cut(s) 246, 600, 669
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 6 cut(s) 244, 579, 598, 667, 844, 1008
BstV1I GCAGC 5 cut(s) 16, 208, 628, 889, 1054
BstV2I GAAGAC 2 cut(s) 1007, 1113
BstX2I RGATCY 3 cut(s) 131, 307, 672
BstXI CCANNNNNNTGG 1 cut(s) 23
BstYI RGATCY 3 cut(s) 131, 307, 672
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 4 cut(s) 342, 375, 598, 612
BsuTUI ATCGAT 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 592
BtsCI GGATG 4 cut(s) 557, 805, 885, 1135
BtsI GCAGTG 2 cut(s) 216, 1194
BtsIMutI CAGTG 3 cut(s) 108, 216, 1194
Cac8I GCNNGC 5 cut(s) 226, 614, 688, 900, 1182
CciI TCATGA 1 cut(s) 1087
Cfr10I RCCGGY 3 cut(s) 437, 612, 1148
Cfr13I GGNCC 2 cut(s) 596, 610
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 2 cut(s) 629, 919
Csp6I GTAC 2 cut(s) 886, 1152
CspAI ACCGGT 1 cut(s) 437
CspCI CAANNNNNGTGG 2 cut(s) 520, 555
CviAII CATG 7 cut(s) 251, 314, 325, 460, 496, 890, 1088
CviQI GTAC 2 cut(s) 886, 1152
DdeI CTNAG 7 cut(s) 177, 398, 470, 511, 1096, 1125, 1185
DpnI GATC 7 cut(s) 133, 309, 396, 674, 933, 972, 1190
DpnII GATC 7 cut(s) 131, 307, 394, 672, 931, 970, 1188
DriI GACNNNNNGTC 1 cut(s) 952
Eam1104I CTCTTC 3 cut(s) 97, 279, 288
Eam1105I GACNNNNNGTC 1 cut(s) 952
EarI CTCTTC 3 cut(s) 97, 279, 288
EciI GGCGGA 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 644
EcoICRI GAGCTC 1 cut(s) 228
EcoRII CCWGG 3 cut(s) 244, 598, 667
EcoT14I CCWWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 7 cut(s) 254, 317, 328, 463, 499, 893, 1091
FaqI GGGAC 1 cut(s) 1118
FatI CATG 7 cut(s) 250, 313, 324, 459, 495, 889, 1087
FauNDI CATATG 1 cut(s) 812
Fnu4HI GCNGC 7 cut(s) 30, 222, 456, 617, 726, 903, 1068
FokI GGATG 4 cut(s) 544, 812, 892, 1142
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 7 cut(s) 30, 222, 456, 617, 726, 903, 1068
FspBI CTAG 3 cut(s) 156, 287, 377
GluI GCNGC 7 cut(s) 30, 222, 456, 617, 726, 903, 1068
GsaI CCCAGC 1 cut(s) 640
GsuI CTGGAG 2 cut(s) 45, 621
HaeIII GGCC 4 cut(s) 342, 375, 598, 612
HgaI GACGC 2 cut(s) 629, 919
Hin1II CATG 7 cut(s) 254, 317, 328, 463, 499, 893, 1091
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 5 cut(s) 62, 647, 742, 751, 1047
HphI GGTGA 6 cut(s) 341, 427, 860, 928, 1006, 1120
Hpy166II GTNNAC 2 cut(s) 851, 919
Hpy188I TCNGA 6 cut(s) 136, 178, 623, 842, 1052, 1188
Hpy8I GTNNAC 2 cut(s) 851, 919
Hpy99I CGWCG 3 cut(s) 174, 208, 1205
HpyAV CCTTC 6 cut(s) 93, 202, 275, 442, 479, 526
HpyCH4III ACNGT 2 cut(s) 539, 1171
HpyCH4IV ACGT 2 cut(s) 765, 869
HpyCH4V TGCA 4 cut(s) 32, 898, 905, 1070
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 35, 218, 637
HpyF3I CTNAG 7 cut(s) 177, 398, 470, 511, 1096, 1125, 1185
HpySE526I ACGT 2 cut(s) 765, 869
Hsp92II CATG 7 cut(s) 254, 317, 328, 463, 499, 893, 1091
Kpn2I TCCGGA 1 cut(s) 796
KpnI GGTACC 1 cut(s) 889
KroI GCCGGC 1 cut(s) 612
KroNI GCCGGC 1 cut(s) 614
Kzo9I GATC 7 cut(s) 131, 307, 394, 672, 931, 970, 1188
LguI GCTCTTC 2 cut(s) 97, 279
LmnI GCTCC 8 cut(s) 20, 26, 85, 108, 452, 623, 1052, 1108
Lsp1109I GCAGC 5 cut(s) 16, 208, 628, 889, 1054
LweI GCATC 1 cut(s) 1090
MaeI CTAG 3 cut(s) 156, 287, 377
MaeII ACGT 2 cut(s) 765, 869
MaeIII GTNAC 3 cut(s) 199, 364, 1192
MalI GATC 7 cut(s) 133, 309, 396, 674, 933, 972, 1190
MboI GATC 7 cut(s) 131, 307, 394, 672, 931, 970, 1188
MfeI CAATTG 1 cut(s) 981
MflI RGATCY 3 cut(s) 131, 307, 672
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 3 cut(s) 52, 569, 981
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 2 cut(s) 90, 555
MroI TCCGGA 1 cut(s) 796
MroNI GCCGGC 1 cut(s) 612
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 3 cut(s) 316, 318, 440
MspR9I CCNGG 6 cut(s) 246, 581, 600, 669, 846, 1010
MunI CAATTG 1 cut(s) 981
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 3 cut(s) 246, 600, 669
MwoI GCNNNNNNNGC 4 cut(s) 29, 35, 218, 637
NaeI GCCGGC 1 cut(s) 614
NciI CCSGG 3 cut(s) 581, 846, 1010
NdeI CATATG 1 cut(s) 812
NdeII GATC 7 cut(s) 131, 307, 394, 672, 931, 970, 1188
NgoMIV GCCGGC 1 cut(s) 612
NlaIII CATG 7 cut(s) 254, 317, 328, 463, 499, 893, 1091
NlaIV GGNNCC 5 cut(s) 454, 625, 674, 887, 1054
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 1 cut(s) 1192
NspI RCATGY 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 644
PagI TCATGA 1 cut(s) 1087
PasI CCCWGGG 1 cut(s) 668
PceI AGGCCT 1 cut(s) 375
PciI ACATGT 1 cut(s) 313
PciSI GCTCTTC 2 cut(s) 97, 279
PcsI WCGNNNNNNNCGW 3 cut(s) 866, 962, 1197
PctI GAATGC 1 cut(s) 631
PdiI GCCGGC 1 cut(s) 614
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 4 cut(s) 62, 742, 751, 1047
PflMI CCANNNNNTGG 1 cut(s) 682
PinAI ACCGGT 1 cut(s) 437
PkrI GCNGC 7 cut(s) 31, 223, 457, 618, 727, 904, 1069
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PscI ACATGT 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 230
Psp6I CCWGG 3 cut(s) 244, 598, 667
PspFI CCCAGC 1 cut(s) 636
PspGI CCWGG 3 cut(s) 244, 598, 667
PspN4I GGNNCC 5 cut(s) 454, 625, 674, 887, 1054
PspPI GGNCC 2 cut(s) 596, 610
PsuI RGATCY 3 cut(s) 131, 307, 672
RsaI GTAC 2 cut(s) 887, 1153
RsaNI GTAC 2 cut(s) 886, 1152
RseI CAYNNNNRTG 3 cut(s) 316, 318, 440
SacI GAGCTC 1 cut(s) 230
SapI GCTCTTC 2 cut(s) 97, 279
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 7 cut(s) 30, 222, 456, 617, 726, 903, 1068
Sau3AI GATC 7 cut(s) 131, 307, 394, 672, 931, 970, 1188
Sau96I GGNCC 2 cut(s) 596, 610
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 6 cut(s) 246, 581, 600, 669, 846, 1010
SduI GDGCHC 1 cut(s) 230
SfaNI GCATC 1 cut(s) 1090
Sfr274I CTCGAG 1 cut(s) 644
SlaI CTCGAG 1 cut(s) 644
SmiMI CAYNNNNRTG 3 cut(s) 316, 318, 440
SmlI CTYRAG 2 cut(s) 644, 782
SmoI CTYRAG 2 cut(s) 644, 782
Sse9I AATT 3 cut(s) 52, 569, 981
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 3 cut(s) 212, 456, 725
SspMI CTAG 3 cut(s) 156, 287, 377
SstI GAGCTC 1 cut(s) 230
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 6 cut(s) 244, 579, 598, 667, 844, 1008
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 2 cut(s) 539, 1171
TaiI ACGT 2 cut(s) 768, 872
TaqI TCGA 6 cut(s) 60, 267, 483, 645, 945, 1203
TasI AATT 3 cut(s) 52, 569, 981
TauI GCSGC 2 cut(s) 458, 728
TfiI GAWTC 4 cut(s) 62, 742, 751, 1047
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 3 cut(s) 108, 223, 1201
TseFI GTSAC 1 cut(s) 1192
TseI GCWGC 5 cut(s) 29, 221, 616, 902, 1067
Tsp45I GTSAC 1 cut(s) 1192
TspDTI ATGAA 5 cut(s) 225, 506, 734, 816, 1076
TspGWI ACGGA 2 cut(s) 363, 581
TspRI CASTG 3 cut(s) 108, 223, 1201
Van91I CCANNNNNTGG 1 cut(s) 682
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XhoI CTCGAG 1 cut(s) 644
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 3 cut(s) 156, 287, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.