MD05G1282600.v1.1

Pyruvate dehydrogenase E1 component subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
41597192 .. 41600051
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1282600.v1.1.491

Sequence Viewer

Length: 1221 bp
ATGGCCACCGTCTCTCAGTGCTTCGGAGCCGCTGCCGCTCTGTCGGTCTCCTCCGTCAATTCCAGGAAGCTCCACCTACCTTCCCGCAGATCCCTCCCAGGGAGGAAAGCGAGCTTCTTTGTTGTCAGATCTGACGCCGGGGTCAGCTCGGGTTCGAATTCGAAGGCTCGCCGGGCTGATCAGCTGATTACCAATGCTGTTGCAACCAAAGCTGATGGTGCTGCAGCTTCGACCGCATCGAAACCTGGGCATGAACTTCTGCTTTTCGAAGCCTTGCGAGAAGGATTGGAAGAAGAGATGGCCAGGGATCCCACTGTATGTGTAATGGGTGAAGATGTGGGCCACTATGGAGGATCGTACAAGGTGACCAAGGGCCTGGCCGATAAGTATGGGGATCTCAGGGTTCTTGATACTCCTATCGCTGAGAACTCCTTTACGGGTATGGGTATTGGAGCTGCCATGACTGGTCTAAGACCAATTATTGAGGGCATGAACATGGGATTTCTTCTGCTGGCTTTTAACCAGATCTCCAACAACTGTGGTATGCTCCACTACACTTCTGGTGGTCAGTTTAAAATCCCAGTGGTTATCCGAGGTCCTGGTGGAGTGGGAAGGCAACTTGGGGCTGAGCACTCGCAACGTCTTGAGTCCTATTTTCAATCTATTCCCGGAATTCAAATGGTTGCATGCTCAACCCCTTACAATGCCAAAGGTTTGATGAAAGCTGCCATTCGAAGTGATAACCCAGTGATTCTGTTTGAGCATGTGTTGCTGTACAATCTCAAGGAGAGAATTCCAGACGAAGAGTATGTGTGCAATCTTGAAGAAGCTGAGATGGTCAGGCCTGGGGAGCATGTCACTATCTTGACATATTCTCGGATGAGGTATCATGTGATGCAGGCTGCCAAAACTTTGGTGAACAAGGGTTATGATCCCGAAGTGATTGATATTAGGTCGTTGAAGCCATTTGATCTTCACACCATTGGGAACTCAGTGAAGAAAACACACCGCGTGCTGATTGTGGAGGAGTGCATGCGGACAGGTGGAATTGGTGCTAGTTTGACTGCCGCAATCACCGAGAACTTCCATGATTATTTAGATGCCCCTATCATATGCCTGTCTTCACAGGATGTGCCCACTCCGTATGCTGCAACGTTGGAGGAAGTGACTGTTGTTCAACCTGCCCAGATTGTGACGGCGGTTGAGAAACTCTGCCAGTAA

Protein Analysis

407

Amino Acids

43.89

Weight (kDa)

6.61

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transket_pyr PF02779 90 - 260 1.8e-43 Transketolase, pyrimidine binding domain
Transketolase_C PF02780 276 - 397 2.5e-37 Transketolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30120 AT2G34590
fragaria_vesca FvH4_3g05390
malus_domestica MD05G1282600.v1.1
prunus_persica Prupe.4G082200_v2.0.a1
pyrus_communis pycom05g26190
rosa_chinensis RchiOBHm_Chr5g0014341
rosa_laevigata RLG00000032100
rosa_multiflora Rmu_ssc0000422.1_g000047
rosa_roxburghii Rroxscaffold_1G00062240
rosa_rugosa Rorug05G0017400
rosa_samantha Rh5AG111700 Rh5BG108900 Rh5CG120700 Rh5DG107800
rosa_wichuraiana Rw5G009730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 1189
AccBSI CCGCTC 1 cut(s) 38
AccII CGCG 1 cut(s) 1011
AciI CCGC 8 cut(s) 30, 36, 85, 234, 1009, 1036, 1068, 1199
AclI AACGTT 1 cut(s) 1154
AclWI GGATC 6 cut(s) 84, 302, 315, 361, 402, 926
AcoI YGGCCR 3 cut(s) 3, 300, 378
AcsI RAATTY 3 cut(s) 157, 672, 792
AcyI GRCGYC 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 1012
AfaI GTAC 2 cut(s) 359, 776
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 5 cut(s) 659, 677, 824, 961, 1178
AjnI CCWGG 7 cut(s) 62, 97, 244, 302, 375, 598, 844
AluBI AGCT 9 cut(s) 70, 114, 147, 184, 212, 227, 455, 725, 830
AluI AGCT 9 cut(s) 70, 114, 147, 184, 212, 227, 455, 725, 830
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 2 cut(s) 16, 52
AlwI GGATC 6 cut(s) 84, 302, 315, 361, 402, 926
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 6 cut(s) 3, 300, 340, 373, 378, 842
ApeKI GCWGC 7 cut(s) 32, 221, 224, 455, 725, 902, 1148
ApoI RAATTY 3 cut(s) 157, 672, 792
AspS9I GGNCC 3 cut(s) 340, 373, 596
AsuC2I CCSGG 3 cut(s) 139, 173, 669
AsuHPI GGTGA 4 cut(s) 341, 376, 928, 1066
AsuII TTCGAA 4 cut(s) 155, 161, 267, 733
AvaI CYCGRG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 596
BaeGI GKGCMC 1 cut(s) 1137
BalI TGGCCA 2 cut(s) 5, 302
BamHI GGATCC 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 1113
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 7 cut(s) 19, 208, 236, 442, 712, 889, 1135
BccI CCATC 3 cut(s) 209, 292, 829
BceAI ACGGC 1 cut(s) 1212
BciT130I CCWGG 7 cut(s) 64, 99, 246, 304, 377, 600, 846
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 3 cut(s) 139, 173, 669
BcoDI GTCTC 2 cut(s) 16, 52
BfaI CTAG 1 cut(s) 1056
BfmI CTRYAG 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 1189
BglII AGATCT 2 cut(s) 128, 525
BlpI GCTNAGC 1 cut(s) 627
Bme18I GGWCC 1 cut(s) 596
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 340, 373, 596
BmiI GGNNCC 2 cut(s) 28, 309
BmrI ACTGGG 2 cut(s) 575, 740
BmsI GCATC 3 cut(s) 245, 885, 1090
BmuI ACTGGG 2 cut(s) 575, 740
BpiI GAAGAC 1 cut(s) 1113
Bpu1102I GCTNAGC 1 cut(s) 627
Bpu14I TTCGAA 4 cut(s) 155, 161, 267, 733
BpuEI CTTGAG 2 cut(s) 665, 767
BpuMI CCSGG 3 cut(s) 139, 173, 669
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 8 cut(s) 97, 98, 138, 245, 303, 369, 592, 845
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 4 cut(s) 469, 581, 746, 1216
BseBI CCWGG 7 cut(s) 64, 99, 246, 304, 377, 600, 846
BseDI CCNNGG 8 cut(s) 97, 98, 138, 245, 303, 369, 592, 845
BseGI GGATG 2 cut(s) 885, 1135
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 6 cut(s) 29, 412, 414, 618, 822, 1005
BseNI ACTGG 4 cut(s) 469, 581, 746, 1216
BseRI GAGGAG 2 cut(s) 40, 1040
BseSI GKGCMC 1 cut(s) 1137
BseXI GCAGC 7 cut(s) 19, 208, 236, 442, 712, 889, 1135
Bsh1236I CGCG 1 cut(s) 1011
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 6 cut(s) 5, 302, 342, 375, 380, 844
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 3 cut(s) 138, 172, 669
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 2 cut(s) 16, 52
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 6 cut(s) 5, 302, 342, 375, 380, 844
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 148
Bsp119I TTCGAA 4 cut(s) 155, 161, 267, 733
Bsp1286I GDGCHC 2 cut(s) 633, 1137
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
Bsp1720I GCTNAGC 1 cut(s) 627
BspACI CCGC 8 cut(s) 30, 36, 85, 234, 1009, 1036, 1068, 1199
BspANI GGCC 6 cut(s) 5, 302, 342, 375, 380, 844
BspCNI CTCAG 6 cut(s) 28, 411, 415, 619, 823, 1004
BspFNI CGCG 1 cut(s) 1011
BspLI GGNNCC 2 cut(s) 28, 309
BspMAI CTGCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 1189
BspPI GGATC 6 cut(s) 84, 302, 315, 361, 402, 926
BspT104I TTCGAA 4 cut(s) 155, 161, 267, 733
BspTNI GGTCTC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 38
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 4 cut(s) 469, 581, 746, 1216
BssECI CCNNGG 8 cut(s) 97, 98, 138, 245, 303, 369, 592, 845
BssMI GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 7 cut(s) 64, 99, 246, 304, 377, 600, 846
Bst4CI ACNGT 4 cut(s) 10, 316, 539, 1171
Bst6I CTCTTC 2 cut(s) 288, 798
BstACI GRCGYC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 769
BstAUI TGTACA 1 cut(s) 774
BstBI TTCGAA 4 cut(s) 155, 161, 267, 733
BstC8I GCNNGC 7 cut(s) 112, 169, 513, 688, 900, 1013, 1034
BstDEI CTNAG 7 cut(s) 15, 398, 423, 470, 627, 831, 991
BstEII GGTNACC 1 cut(s) 364
BstF5I GGATG 2 cut(s) 885, 1135
BstFNI CGCG 1 cut(s) 1011
BstKTI GATC 9 cut(s) 92, 131, 181, 310, 356, 397, 528, 934, 973
BstMAI GTCTC 2 cut(s) 16, 52
BstMBI GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 7 cut(s) 35, 173, 209, 218, 233, 769, 850
BstNI CCWGG 7 cut(s) 64, 99, 246, 304, 377, 600, 846
BstNSI RCATGY 4 cut(s) 690, 767, 857, 1036
BstPI GGTNACC 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 1137
BstUI CGCG 1 cut(s) 1011
BstV1I GCAGC 7 cut(s) 19, 208, 236, 442, 712, 889, 1135
BstV2I GAAGAC 1 cut(s) 1113
BstX2I RGATCY 5 cut(s) 89, 128, 307, 394, 525
BstXI CCANNNNNNTGG 2 cut(s) 376, 913
BstYI RGATCY 5 cut(s) 89, 128, 307, 394, 525
BsuRI GGCC 6 cut(s) 5, 302, 342, 375, 380, 844
BtsCI GGATG 2 cut(s) 885, 1135
BtsIMutI CAGTG 5 cut(s) 23, 312, 588, 753, 999
BveI ACCTGC 1 cut(s) 1189
Cac8I GCNNGC 7 cut(s) 112, 169, 513, 688, 900, 1013, 1034
Cfr13I GGNCC 3 cut(s) 340, 373, 596
CseI GACGC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 358, 775
CspCI CAANNNNNGTGG 2 cut(s) 520, 555
CviQI GTAC 2 cut(s) 358, 775
DdeI CTNAG 7 cut(s) 15, 398, 423, 470, 627, 831, 991
DpnI GATC 9 cut(s) 91, 130, 180, 309, 355, 396, 527, 933, 972
DpnII GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
DraI TTTAAA 1 cut(s) 574
DraIII CACNNNGTG 1 cut(s) 1012
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 3 cut(s) 3, 300, 378
Eam1104I CTCTTC 2 cut(s) 288, 798
EarI CTCTTC 2 cut(s) 288, 798
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 844
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 148
Eco91I GGTNACC 1 cut(s) 364
EcoO109I RGGNCCY 2 cut(s) 373, 596
EcoO65I GGTNACC 1 cut(s) 364
EcoRI GAATTC 3 cut(s) 157, 672, 792
EcoRII CCWGG 7 cut(s) 62, 97, 244, 302, 375, 598, 844
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 16
FauI CCCGC 1 cut(s) 92
FauNDI CATATG 1 cut(s) 1112
FbaI TGATCA 1 cut(s) 178
FokI GGATG 2 cut(s) 892, 1142
FspBI CTAG 1 cut(s) 1056
HaeIII GGCC 6 cut(s) 5, 302, 342, 375, 380, 844
HapII CCGG 3 cut(s) 138, 172, 669
HgaI GACGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 135
HinfI GANTC 2 cut(s) 647, 751
HpaII CCGG 3 cut(s) 138, 172, 669
HphI GGTGA 4 cut(s) 341, 376, 928, 1066
Hpy166II GTNNAC 1 cut(s) 919
Hpy188I TCNGA 5 cut(s) 26, 128, 133, 593, 879
Hpy188III TCNNGA 6 cut(s) 407, 644, 797, 821, 865, 935
Hpy8I GTNNAC 1 cut(s) 919
HpyAV CCTTC 4 cut(s) 90, 157, 275, 606
HpyCH4III ACNGT 4 cut(s) 10, 316, 539, 1171
HpyCH4IV ACGT 2 cut(s) 640, 1154
HpyCH4V TGCA 7 cut(s) 203, 224, 686, 816, 898, 1032, 1151
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 173, 209, 218, 233, 769, 850
HpyF3I CTNAG 7 cut(s) 15, 398, 423, 470, 627, 831, 991
HpySE526I ACGT 2 cut(s) 640, 1154
Hsp92I GRCGYC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
LmnI GCTCC 5 cut(s) 26, 75, 452, 552, 850
Lsp1109I GCAGC 7 cut(s) 19, 208, 236, 442, 712, 889, 1135
LweI GCATC 3 cut(s) 245, 885, 1090
MaeI CTAG 1 cut(s) 1056
MaeII ACGT 2 cut(s) 640, 1154
MaeIII GTNAC 4 cut(s) 364, 856, 1165, 1192
MalI GATC 9 cut(s) 91, 130, 180, 309, 355, 396, 527, 933, 972
MbiI CCGCTC 1 cut(s) 38
MboI GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
MboII GAAGA 9 cut(s) 302, 305, 344, 497, 815, 836, 965, 1009, 1113
MflI RGATCY 5 cut(s) 89, 128, 307, 394, 525
MhlI GDGCHC 2 cut(s) 633, 1137
MlsI TGGCCA 2 cut(s) 5, 302
MluCI AATT 6 cut(s) 58, 157, 477, 672, 792, 1047
MluNI TGGCCA 2 cut(s) 5, 302
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 2 cut(s) 555, 1137
MnlI CCTC 9 cut(s) 61, 96, 104, 344, 478, 587, 876, 1018, 1153
Mox20I TGGCCA 2 cut(s) 5, 302
MscI TGGCCA 2 cut(s) 5, 302
MseI TTAA 2 cut(s) 519, 573
MslI CAYNNNNRTG 1 cut(s) 494
Msp20I TGGCCA 2 cut(s) 5, 302
MspA1I CMGCKG 2 cut(s) 32, 184
MspI CCGG 3 cut(s) 138, 172, 669
MvaI CCWGG 7 cut(s) 64, 99, 246, 304, 377, 600, 846
MvnI CGCG 1 cut(s) 1011
MwoI GCNNNNNNNGC 7 cut(s) 35, 173, 209, 218, 233, 769, 850
NciI CCSGG 3 cut(s) 139, 173, 669
NdeI CATATG 1 cut(s) 1112
NdeII GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
NlaIV GGNNCC 2 cut(s) 28, 309
NmuCI GTSAC 4 cut(s) 364, 856, 1165, 1192
NspI RCATGY 4 cut(s) 690, 767, 857, 1036
NspV TTCGAA 4 cut(s) 155, 161, 267, 733
PaeI GCATGC 2 cut(s) 690, 1036
PasI CCCWGGG 1 cut(s) 98
PceI AGGCCT 1 cut(s) 844
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 1 cut(s) 751
PfoI TCCNGGA 2 cut(s) 62, 667
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PpuMI RGGWCCY 1 cut(s) 596
Psp1406I AACGTT 1 cut(s) 1154
Psp5II RGGWCCY 1 cut(s) 596
Psp6I CCWGG 7 cut(s) 62, 97, 244, 302, 375, 598, 844
PspEI GGTNACC 1 cut(s) 364
PspGI CCWGG 7 cut(s) 62, 97, 244, 302, 375, 598, 844
PspN4I GGNNCC 2 cut(s) 28, 309
PspPI GGNCC 3 cut(s) 340, 373, 596
PspPPI RGGWCCY 1 cut(s) 596
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 5 cut(s) 89, 128, 307, 394, 525
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 2 cut(s) 359, 776
RsaNI GTAC 2 cut(s) 358, 775
RseI CAYNNNNRTG 1 cut(s) 494
SaqAI TTAA 2 cut(s) 519, 573
Sau3AI GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
Sau96I GGNCC 3 cut(s) 340, 373, 596
SchI GAGTC 1 cut(s) 656
SduI GDGCHC 2 cut(s) 633, 1137
SfaNI GCATC 3 cut(s) 245, 885, 1090
SfcI CTRYAG 1 cut(s) 222
SfuI TTCGAA 4 cut(s) 155, 161, 267, 733
SinI GGWCC 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 644, 782
SmoI CTYRAG 2 cut(s) 644, 782
SphI GCATGC 2 cut(s) 690, 1036
Sse9I AATT 6 cut(s) 58, 157, 477, 672, 792, 1047
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 8 cut(s) 30, 36, 85, 234, 1009, 1036, 1068, 1199
SspMI CTAG 1 cut(s) 1056
StuI AGGCCT 1 cut(s) 844
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 4 cut(s) 10, 316, 539, 1171
TaiI ACGT 2 cut(s) 643, 1157
TaqI TCGA 6 cut(s) 155, 161, 230, 239, 267, 733
TaqII GACCGA 1 cut(s) 34
TasI AATT 6 cut(s) 58, 157, 477, 672, 792, 1047
TatI WGTACW 1 cut(s) 774
TauI GCSGC 3 cut(s) 32, 38, 1070
TfiI GAWTC 1 cut(s) 751
Tru1I TTAA 2 cut(s) 519, 573
Tru9I TTAA 2 cut(s) 519, 573
TscAI CASTG 5 cut(s) 23, 319, 588, 753, 999
TseFI GTSAC 4 cut(s) 364, 856, 1165, 1192
TseI GCWGC 7 cut(s) 32, 221, 224, 455, 725, 902, 1148
Tsp45I GTSAC 4 cut(s) 364, 856, 1165, 1192
TspDTI ATGAA 3 cut(s) 267, 506, 734
TspGWI ACGGA 2 cut(s) 43, 1131
TspRI CASTG 5 cut(s) 23, 319, 588, 753, 999
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 3 cut(s) 157, 672, 792
XceI RCATGY 4 cut(s) 690, 767, 857, 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XspI CTAG 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.