Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015268

Physical Location & Seq

Genomic Coordinates Reverse (-)

9798265 .. 9801288

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG107800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCATTCTTTTTCTAGGCATGAACTTCTTCTTTTTGAAGCCTTACGAGAAGGATTGGAAGAAGAGATGGCTAGGGATCCCACTGTATGTGTAATGGGTGAAGATGTGGGCCACTACGGAGGATCGTACAAGGTGACCAAAGGCCTGGCTGATAAGTATGGGGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCCTTCACAGGGATGGGTATTGGAGCTGCCATGACTGGTCTGAGACCAATTATTGAGGGTATGAACATGGGTTTTCTCCTTCTAGCCTTTAACCAGATTTCCAACAACTGTGGTATGCTCCACTACACTTCTGGAGGTCAATTCAAGATACCAGTAGTCATTCGTGGACCTGGTGGAGTGGGTAGGCAACTTGGGGCTGAGCACTCGCAACGTCTTGAGTCATACTTTCAGTCGATCCCTGGAATCCAAATGGTAGCATGCTCAACCCCTTACAATGCTAAAGGCTTGATGAAAGCTGCCATTCGAAGTGATAACCCCGTGATCCTTTTTGAGCATGTGTTGCTGTACAACCTGAAGGAGAGAATCCCAGATGAAGAATATGTGTGTTCTCTTGAGGAAGCTGAGATGGTGAGGCCTGGGGAGCATGTCACTATATTAACATATTCTAGGATGAGGTATCATGTGATGCAGGCTGCTAAAACTTTGGTGAACAAGGGGTATGACCCAGAAGTTATTGATATTAGGTCATTGAAACCATTTGACCTTCACACCATCGGGAACTCAGTGAAGAAAACACATAGGGTCCTGATTGTGGAGGAGTGCATGCGGACAGGTGGAATTGGTGCTAGTTTGACAGCAGCCATCACCGAGAACTTTCATGATTATTTGGATGCCCCAATTGTATGCCTGTCATCACAGGACGTGCCGACGCCATATGCTGCAACATTAGAGGAAGTGACTGTTGTTCAACCAGCTCAGATTGTGACAGCAGTTGAGGAGCTCTGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004738 GO:0004739 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009856 GO:0009941 GO:0009987 GO:0010240 GO:0016053 GO:0016491 GO:0016624 GO:0016903 GO:0019752 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045254 GO:0046394 GO:0046872 GO:0046914 GO:0048856 GO:0048868 GO:0051704 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

329

Amino Acids

36.25

Weight (kDa)

5.4

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	13 - 183	1.1e-43	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	199 - 320	7.4e-38	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30120 AT2G34590
fragaria_vesca	FvH4_3g05390
malus_domestica	MD05G1282600.v1.1
prunus_persica	Prupe.4G082200_v2.0.a1
pyrus_communis	pycom05g26190
rosa_chinensis	RchiOBHm_Chr5g0014341
rosa_laevigata	RLG00000032100
rosa_multiflora	Rmu_ssc0000422.1_g000047
rosa_roxburghii	Rroxscaffold_1G00062240
rosa_rugosa	Rorug05G0017400
rosa_samantha	Rh5AG111700 Rh5BG108900 Rh5CG120700 Rh5DG107800
rosa_wichuraiana	Rw5G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	805
AclWI	GGATC	6 cut(s)	71, 84, 130, 171, 427, 514
AcuI	CTGAAG	1 cut(s)	572
AcyI	GRCGYC	1 cut(s)	908
AfaI	GTAC	2 cut(s)	128, 545
AfiI	CCNNNNNNNGG	2 cut(s)	207, 790
AgsI	TTSAA	4 cut(s)	38, 343, 730, 947
AjiI	CACGTC	1 cut(s)	901
AjnI	CCWGG	4 cut(s)	144, 367, 436, 613
AluBI	AGCT	5 cut(s)	224, 494, 599, 953, 979
AluI	AGCT	5 cut(s)	224, 494, 599, 953, 979
Alw21I	GWGCWC	2 cut(s)	402, 981
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	6 cut(s)	71, 84, 130, 171, 427, 514
AoxI	GGCC	3 cut(s)	109, 142, 611
ApeKI	GCWGC	5 cut(s)	224, 494, 671, 836, 917
Asp700I	GAANNNNTTC	2 cut(s)	27, 200
AspS9I	GGNCC	3 cut(s)	109, 365, 781
AsuHPI	GGTGA	5 cut(s)	110, 145, 619, 697, 835
AsuII	TTCGAA	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	365, 781
BamHI	GGATCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	981
Bbv12I	GWGCWC	2 cut(s)	402, 981
BbvI	GCAGC	5 cut(s)	211, 481, 658, 848, 904
BccI	CCATC	5 cut(s)	61, 205, 598, 758, 848
BciT130I	CCWGG	4 cut(s)	146, 369, 438, 615
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	5 cut(s)	15, 72, 281, 645, 825
BisI	GCNGC	5 cut(s)	225, 495, 672, 837, 918
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	5 cut(s)	226, 496, 673, 838, 919
Bme1390I	CCNGG	4 cut(s)	146, 369, 438, 615
Bme18I	GGWCC	2 cut(s)	365, 781
BmgBI	CACGTC	1 cut(s)	901
BmgT120I	GGNCC	3 cut(s)	109, 365, 781
BmiI	GGNNCC	2 cut(s)	78, 782
BmrFI	CCNGG	4 cut(s)	146, 369, 438, 615
BmsI	GCATC	2 cut(s)	654, 859
BpmI	CTGGAG	1 cut(s)	351
Bpu1102I	GCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	2 cut(s)	434, 611
BsaHI	GRCGYC	1 cut(s)	908
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	436, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 790
Bse1I	ACTGG	3 cut(s)	238, 350, 985
BseBI	CCWGG	4 cut(s)	146, 369, 438, 615
BseDI	CCNNGG	2 cut(s)	436, 614
BseGI	GGATG	3 cut(s)	216, 654, 874
BseLI	CCNNNNNNNGG	2 cut(s)	207, 790
BseMII	CTCAG	7 cut(s)	181, 183, 230, 387, 591, 774, 968
BseNI	ACTGG	3 cut(s)	238, 350, 985
BseRI	GAGGAG	2 cut(s)	809, 989
BseXI	GCAGC	5 cut(s)	211, 481, 658, 848, 904
BshFI	GGCC	3 cut(s)	111, 144, 613
BsiHKAI	GWGCWC	2 cut(s)	402, 981
BslI	CCNNNNNNNGG	2 cut(s)	207, 790
BsmAI	GTCTC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	111, 144, 613
Bso31I	GGTCTC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	402, 981
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	5 cut(s)	76, 122, 163, 432, 519
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	1 cut(s)	805
BspANI	GGCC	3 cut(s)	111, 144, 613
BspCNI	CTCAG	7 cut(s)	180, 184, 231, 388, 592, 773, 967
BspHI	TCATGA	1 cut(s)	856
BspLI	GGNNCC	2 cut(s)	78, 782
BspPI	GGATC	6 cut(s)	71, 84, 130, 171, 427, 514
BspT104I	TTCGAA	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	238, 350, 985
BssECI	CCNNGG	2 cut(s)	436, 614
BssMI	GATC	5 cut(s)	76, 122, 163, 432, 519
BssNI	GRCGYC	1 cut(s)	908
Bst2UI	CCWGG	4 cut(s)	146, 369, 438, 615
Bst4CI	ACNGT	3 cut(s)	85, 308, 940
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	908
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstAUI	TGTACA	1 cut(s)	543
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	3 cut(s)	457, 669, 803
BstDEI	CTNAG	7 cut(s)	167, 192, 239, 396, 600, 760, 954
BstEII	GGTNACC	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	216, 654, 874
BstKTI	GATC	5 cut(s)	79, 125, 166, 435, 522
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	5 cut(s)	76, 122, 163, 432, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	538, 619
BstNI	CCWGG	4 cut(s)	146, 369, 438, 615
BstNSI	RCATGY	4 cut(s)	459, 536, 626, 805
BstPI	GGTNACC	1 cut(s)	133
BstSCI	CCNGG	4 cut(s)	144, 367, 436, 613
BstV1I	GCAGC	5 cut(s)	211, 481, 658, 848, 904
BstX2I	RGATCY	2 cut(s)	76, 163
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	2 cut(s)	76, 163
BsuRI	GGCC	3 cut(s)	111, 144, 613
BtrI	CACGTC	1 cut(s)	901
BtsCI	GGATG	3 cut(s)	216, 654, 874
BtsIMutI	CAGTG	2 cut(s)	81, 768
Cac8I	GCNNGC	3 cut(s)	457, 669, 803
CciI	TCATGA	1 cut(s)	856
Cfr13I	GGNCC	3 cut(s)	109, 365, 781
CseI	GACGC	1 cut(s)	916
CsiI	ACCWGGT	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	127, 544
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	9 cut(s)	20, 229, 265, 456, 533, 623, 659, 802, 857
CviQI	GTAC	2 cut(s)	127, 544
DdeI	CTNAG	7 cut(s)	167, 192, 239, 396, 600, 760, 954
DpnI	GATC	5 cut(s)	78, 124, 165, 434, 521
DpnII	GATC	5 cut(s)	76, 122, 163, 432, 519
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	979
Eco147I	AGGCCT	2 cut(s)	144, 613
Eco24I	GRGCYC	1 cut(s)	981
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	365, 781
Eco53kI	GAGCTC	1 cut(s)	979
Eco57I	CTGAAG	1 cut(s)	572
Eco91I	GGTNACC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	979
EcoO109I	RGGNCCY	1 cut(s)	781
EcoO65I	GGTNACC	1 cut(s)	133
EcoRII	CCWGG	4 cut(s)	144, 367, 436, 613
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	981
FaeI	CATG	9 cut(s)	23, 232, 268, 459, 536, 626, 662, 805, 860
FatI	CATG	9 cut(s)	19, 228, 264, 455, 532, 622, 658, 801, 856
FauNDI	CATATG	1 cut(s)	913
Fnu4HI	GCNGC	5 cut(s)	225, 495, 672, 837, 918
FokI	GGATG	3 cut(s)	223, 661, 881
FriOI	GRGCYC	1 cut(s)	981
Fsp4HI	GCNGC	5 cut(s)	225, 495, 672, 837, 918
FspBI	CTAG	5 cut(s)	15, 72, 281, 645, 825
GluI	GCNGC	5 cut(s)	225, 495, 672, 837, 918
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	111, 144, 613
HgaI	GACGC	1 cut(s)	916
Hin1I	GRCGYC	1 cut(s)	908
Hin1II	CATG	9 cut(s)	23, 232, 268, 459, 536, 626, 662, 805, 860
HinfI	GANTC	3 cut(s)	416, 441, 561
HphI	GGTGA	5 cut(s)	110, 145, 619, 697, 835
Hpy166II	GTNNAC	2 cut(s)	365, 688
Hpy188I	TCNGA	2 cut(s)	240, 957
Hpy188III	TCNNGA	8 cut(s)	176, 330, 343, 413, 590, 754, 784, 857
Hpy8I	GTNNAC	2 cut(s)	365, 688
Hpy99I	CGWCG	1 cut(s)	910
HpyAV	CCTTC	5 cut(s)	44, 211, 287, 547, 752
HpyCH4III	ACNGT	3 cut(s)	85, 308, 940
HpyCH4IV	ACGT	2 cut(s)	409, 900
HpyCH4V	TGCA	4 cut(s)	4, 667, 801, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	538, 619
HpyF3I	CTNAG	7 cut(s)	167, 192, 239, 396, 600, 760, 954
HpySE526I	ACGT	2 cut(s)	409, 900
Hsp92I	GRCGYC	1 cut(s)	908
Hsp92II	CATG	9 cut(s)	23, 232, 268, 459, 536, 626, 662, 805, 860
Kzo9I	GATC	5 cut(s)	76, 122, 163, 432, 519
LmnI	GCTCC	4 cut(s)	221, 321, 619, 976
Lsp1109I	GCAGC	5 cut(s)	211, 481, 658, 848, 904
LweI	GCATC	2 cut(s)	654, 859
MabI	ACCWGGT	1 cut(s)	367
MaeI	CTAG	5 cut(s)	15, 72, 281, 645, 825
MaeII	ACGT	2 cut(s)	409, 900
MaeIII	GTNAC	4 cut(s)	133, 625, 934, 961
MalI	GATC	5 cut(s)	78, 124, 165, 434, 521
MboI	GATC	5 cut(s)	76, 122, 163, 432, 519
MboII	GAAGA	6 cut(s)	20, 71, 74, 113, 584, 778
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	2 cut(s)	76, 163
MhlI	GDGCHC	2 cut(s)	402, 981
MluCI	AATT	4 cut(s)	246, 338, 816, 876
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	9 cut(s)	113, 247, 326, 586, 603, 645, 787, 922, 967
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	27, 200
MseI	TTAA	2 cut(s)	288, 635
MslI	CAYNNNNRTG	1 cut(s)	209
MspR9I	CCNGG	4 cut(s)	146, 369, 438, 615
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	4 cut(s)	146, 369, 438, 615
MwoI	GCNNNNNNNGC	2 cut(s)	538, 619
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	5 cut(s)	76, 122, 163, 432, 519
NlaIII	CATG	9 cut(s)	23, 232, 268, 459, 536, 626, 662, 805, 860
NlaIV	GGNNCC	2 cut(s)	78, 782
NmuCI	GTSAC	4 cut(s)	133, 625, 934, 961
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	4 cut(s)	459, 536, 626, 805
NspV	TTCGAA	1 cut(s)	502
PaeI	GCATGC	2 cut(s)	459, 805
PagI	TCATGA	1 cut(s)	856
PceI	AGGCCT	2 cut(s)	144, 613
PctI	GAATGC	1 cut(s)	4
PdmI	GAANNNNTTC	2 cut(s)	27, 200
PfeI	GAWTC	2 cut(s)	441, 561
PkrI	GCNGC	5 cut(s)	226, 496, 673, 838, 919
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	781
Psp124BI	GAGCTC	1 cut(s)	981
Psp5II	RGGWCCY	1 cut(s)	781
Psp6I	CCWGG	4 cut(s)	144, 367, 436, 613
PspEI	GGTNACC	1 cut(s)	133
PspGI	CCWGG	4 cut(s)	144, 367, 436, 613
PspN4I	GGNNCC	2 cut(s)	78, 782
PspPI	GGNCC	3 cut(s)	109, 365, 781
PspPPI	RGGWCCY	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	76, 163
RsaI	GTAC	2 cut(s)	128, 545
RsaNI	GTAC	2 cut(s)	127, 544
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	981
SaqAI	TTAA	2 cut(s)	288, 635
SatI	GCNGC	5 cut(s)	225, 495, 672, 837, 918
Sau3AI	GATC	5 cut(s)	76, 122, 163, 432, 519
Sau96I	GGNCC	3 cut(s)	109, 365, 781
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	4 cut(s)	146, 369, 438, 615
SduI	GDGCHC	2 cut(s)	402, 981
SexAI	ACCWGGT	1 cut(s)	367
SfaNI	GCATC	2 cut(s)	654, 859
SfuI	TTCGAA	1 cut(s)	502
SinI	GGWCC	2 cut(s)	365, 781
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	413, 590
SmoI	CTYRAG	2 cut(s)	413, 590
SphI	GCATGC	2 cut(s)	459, 805
Sse9I	AATT	4 cut(s)	246, 338, 816, 876
SseBI	AGGCCT	2 cut(s)	144, 613
SsiI	CCGC	1 cut(s)	805
SspMI	CTAG	5 cut(s)	15, 72, 281, 645, 825
SstI	GAGCTC	1 cut(s)	981
StuI	AGGCCT	2 cut(s)	144, 613
StyD4I	CCNGG	4 cut(s)	144, 367, 436, 613
TaaI	ACNGT	3 cut(s)	85, 308, 940
TaiI	ACGT	2 cut(s)	412, 903
TaqI	TCGA	2 cut(s)	431, 502
TasI	AATT	4 cut(s)	246, 338, 816, 876
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	2 cut(s)	441, 561
Tru1I	TTAA	2 cut(s)	288, 635
Tru9I	TTAA	2 cut(s)	288, 635
TscAI	CASTG	2 cut(s)	88, 768
TseFI	GTSAC	4 cut(s)	133, 625, 934, 961
TseI	GCWGC	5 cut(s)	224, 494, 671, 836, 917
Tsp45I	GTSAC	4 cut(s)	133, 625, 934, 961
TspDTI	ATGAA	5 cut(s)	36, 275, 503, 585, 845
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	88, 768
VpaK11BI	GGWCC	2 cut(s)	365, 781
XceI	RCATGY	4 cut(s)	459, 536, 626, 805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmnI	GAANNNNTTC	2 cut(s)	27, 200
XspI	CTAG	5 cut(s)	15, 72, 281, 645, 825
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.