Prupe.4G082200_v2.0.a1

Pyruvate dehydrogenase E1 component subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
4019016 .. 4021689
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G082200.1

Sequence Viewer

Length: 1221 bp
ATGGCTACAGTCTCTCAGTGTTTTGGAGCTACTTCGGCTGCTATATCGGTCTCCTCCAACTCAAGGAAGCTTCTCCTCCCTTCTCGTAGATCCCTCCCAGGGAGGAAAGTGAGCTTCTTTGTTGTCAGATCTGATGCCGGGGCTAAGTCGGGTCCGAATTCAAGAGCTCGTCGGGCCGATCAGCTAATTACCAATGCTGTTGCAACAAAGGCTGATGGCGCTGCGGCTTCGACGGCATCGAAACCTGGGCACGAACTTCTGCTTTTTGAAGCCCTACGTGAAGGATTGGAAGAAGAGATGGCTAGGGATCCCACTGTATGTGTAATGGGTGAAGATGTGGGACACTATGGAGGATCGTACAAGGTGACCAAAGGCCTGGCTGATAAGTATGGAGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCCTTTACAGGTATGGGTATTGGAGCTGCCATGACTGGTCTGAGACCAATTATCGAGGGTATGAACATGGGATTTCTCCTTCTAGCCTTTAACCAGATCTCCAACAACTGTGGTATGCTCCACTACACTTCTGGGGGTCAGTTTAAAATTCCAGTAGTTATTCGTGGTCCTGGTGGAGTGGGAAGGCAACTTGGGGCTGAGCACTCGCAACGTCTAGAGTCCTATTTTCAGTCGATTCCTGGAATCCAAATGGTAGCATGCTCAACCCCTTACAATGCCAAAGGTTTGATGAAAGCTGCCATTCGAAGTGATAACCCAGTGATTCTTTTTGAGCATGTGTTGCTATACAATCTCAAGGAGAGAATTCCAGATGAAGAATATGTGTGTTCTCTTGAGGAAGCTGAGATGGTTAGGCCTGGGGAGCATGTCACTATATTGACGTACTCTCGGATGAGGTATCATGTGATGCAGGCTGCCAAAACTTTGGTGAATAAGGGTTATGATCCAGAAGTGATTGATATTAGGTCGTTGAAACCATTTGATCTTCACACAATAGGAAATTCAGTGAAGAAAACACACCGCGTGCTGATTGTCGAGGAGTGCATGCGGACGGGTGGAATTGGTGCTAGCTTGACTGCAGCAATCACTGAGAACTTCCATGATTATCTAGATGCCCCTATTATATGCCTGTCTTCACAGGATGTTCCCACTCCATATGCCGCAACATTGGAGGAAGTGACTGTTGTTCAACCTGCCCAGATTGTGACGGCAGTTGAGCAGCTCTGCCAGTAA

Protein Analysis

407

Amino Acids

43.94

Weight (kDa)

6.57

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30120 AT2G34590
fragaria_vesca FvH4_3g05390
malus_domestica MD05G1282600.v1.1
prunus_persica Prupe.4G082200_v2.0.a1
pyrus_communis pycom05g26190
rosa_chinensis RchiOBHm_Chr5g0014341
rosa_laevigata RLG00000032100
rosa_multiflora Rmu_ssc0000422.1_g000047
rosa_roxburghii Rroxscaffold_1G00062240
rosa_rugosa Rorug05G0017400
rosa_samantha Rh5AG111700 Rh5BG108900 Rh5CG120700 Rh5DG107800
rosa_wichuraiana Rw5G009730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1189
AccII CGCG 1 cut(s) 1011
AciI CCGC 4 cut(s) 224, 1009, 1036, 1149
AclWI GGATC 5 cut(s) 84, 302, 315, 361, 926
AcsI RAATTY 4 cut(s) 157, 576, 792, 988
AdeI CACNNNGTG 1 cut(s) 1012
AfaI GTAC 2 cut(s) 359, 872
AfiI CCNNNNNNNGG 2 cut(s) 63, 99
AgsI TTSAA 4 cut(s) 162, 269, 961, 1178
AjnI CCWGG 6 cut(s) 97, 244, 375, 598, 667, 844
Alw21I GWGCWC 2 cut(s) 169, 633
Alw26I GTCTC 3 cut(s) 16, 55, 466
AlwI GGATC 5 cut(s) 84, 302, 315, 361, 926
AoxI GGCC 3 cut(s) 174, 373, 842
ApeKI GCWGC 7 cut(s) 38, 221, 455, 725, 902, 1067, 1207
ApoI RAATTY 4 cut(s) 157, 576, 792, 988
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 3 cut(s) 152, 174, 596
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 341, 376, 928
AsuII TTCGAA 1 cut(s) 733
AsuNHI GCTAGC 1 cut(s) 1055
AvaII GGWCC 2 cut(s) 152, 596
BaeGI GKGCMC 1 cut(s) 252
BamHI GGATCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 1113
Bbv12I GWGCWC 2 cut(s) 169, 633
BbvI GCAGC 6 cut(s) 25, 208, 442, 712, 889, 1079
BccI CCATC 3 cut(s) 209, 292, 829
BceAI ACGGC 2 cut(s) 249, 1212
BciT130I CCWGG 6 cut(s) 99, 246, 377, 600, 669, 846
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 3 cut(s) 16, 55, 466
BfaI CTAG 5 cut(s) 303, 512, 644, 1056, 1097
BfmI CTRYAG 2 cut(s) 6, 1065
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 1189
BglII AGATCT 3 cut(s) 128, 394, 525
BisI GCNGC 9 cut(s) 39, 222, 225, 456, 726, 903, 1068, 1149, 1208
BlpI GCTNAGC 1 cut(s) 627
BlsI GCNGC 9 cut(s) 40, 223, 226, 457, 727, 904, 1069, 1150, 1209
Bme1390I CCNGG 7 cut(s) 99, 139, 246, 377, 600, 669, 846
Bme18I GGWCC 2 cut(s) 152, 596
BmgT120I GGNCC 3 cut(s) 152, 174, 596
BmiI GGNNCC 2 cut(s) 153, 309
BmrFI CCNGG 7 cut(s) 99, 139, 246, 377, 600, 669, 846
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 4 cut(s) 124, 245, 885, 1090
BmtI GCTAGC 1 cut(s) 1059
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 1 cut(s) 1113
Bpu1102I GCTNAGC 1 cut(s) 627
Bpu14I TTCGAA 1 cut(s) 733
BpuEI CTTGAG 3 cut(s) 46, 767, 842
BpuMI CCSGG 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 278
BsaI GGTCTC 2 cut(s) 55, 466
BsaJI CCNNGG 5 cut(s) 97, 98, 138, 245, 845
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 99
Bse1I ACTGG 4 cut(s) 469, 581, 746, 1216
BseBI CCWGG 6 cut(s) 99, 246, 377, 600, 669, 846
BseDI CCNNGG 5 cut(s) 97, 98, 138, 245, 845
BseGI GGATG 2 cut(s) 885, 1135
BseLI CCNNNNNNNGG 2 cut(s) 63, 99
BseMII CTCAG 7 cut(s) 29, 412, 414, 461, 618, 822, 1068
BseNI ACTGG 4 cut(s) 469, 581, 746, 1216
BseRI GAGGAG 3 cut(s) 43, 65, 1040
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 6 cut(s) 25, 208, 442, 712, 889, 1079
Bsh1236I CGCG 1 cut(s) 1011
BshFI GGCC 3 cut(s) 176, 375, 844
BsiHKAI GWGCWC 2 cut(s) 169, 633
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 63, 99
BsmAI GTCTC 3 cut(s) 16, 55, 466
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 3 cut(s) 176, 375, 844
Bso31I GGTCTC 2 cut(s) 55, 466
Bsp119I TTCGAA 1 cut(s) 733
Bsp1286I GDGCHC 3 cut(s) 169, 252, 633
Bsp143I GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
Bsp1720I GCTNAGC 1 cut(s) 627
BspACI CCGC 4 cut(s) 224, 1009, 1036, 1149
BspANI GGCC 3 cut(s) 176, 375, 844
BspCNI CTCAG 7 cut(s) 28, 411, 415, 462, 619, 823, 1069
BspFNI CGCG 1 cut(s) 1011
BspLI GGNNCC 2 cut(s) 153, 309
BspMAI CTGCAG 1 cut(s) 1069
BspMI ACCTGC 1 cut(s) 1189
BspOI GCTAGC 1 cut(s) 1059
BspPI GGATC 5 cut(s) 84, 302, 315, 361, 926
BspT104I TTCGAA 1 cut(s) 733
BspTNI GGTCTC 2 cut(s) 55, 466
BsrI ACTGG 4 cut(s) 469, 581, 746, 1216
BssECI CCNNGG 5 cut(s) 97, 98, 138, 245, 845
BssMI GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
Bst2UI CCWGG 6 cut(s) 99, 246, 377, 600, 669, 846
Bst4CI ACNGT 4 cut(s) 10, 316, 539, 1171
Bst6I CTCTTC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 769
BstBAI YACGTR 1 cut(s) 278
BstBI TTCGAA 1 cut(s) 733
BstC8I GCNNGC 5 cut(s) 688, 900, 1013, 1034, 1057
BstDEI CTNAG 8 cut(s) 15, 144, 398, 423, 470, 627, 831, 1077
BstEII GGTNACC 1 cut(s) 364
BstF5I GGATG 2 cut(s) 885, 1135
BstFNI CGCG 1 cut(s) 1011
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 9 cut(s) 92, 131, 181, 310, 356, 397, 528, 934, 973
BstMAI GTCTC 3 cut(s) 16, 55, 466
BstMBI GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
BstMWI GCNNNNNNNGC 7 cut(s) 35, 173, 209, 218, 233, 769, 850
BstNI CCWGG 6 cut(s) 99, 246, 377, 600, 669, 846
BstNSI RCATGY 4 cut(s) 690, 767, 857, 1036
BstPI GGTNACC 1 cut(s) 364
BstSCI CCNGG 7 cut(s) 97, 137, 244, 375, 598, 667, 844
BstSFI CTRYAG 2 cut(s) 6, 1065
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 1 cut(s) 1011
BstV1I GCAGC 6 cut(s) 25, 208, 442, 712, 889, 1079
BstV2I GAAGAC 1 cut(s) 1113
BstX2I RGATCY 5 cut(s) 89, 128, 307, 394, 525
BstXI CCANNNNNNTGG 2 cut(s) 376, 913
BstYI RGATCY 5 cut(s) 89, 128, 307, 394, 525
BsuRI GGCC 3 cut(s) 176, 375, 844
BtsCI GGATG 2 cut(s) 885, 1135
BtsIMutI CAGTG 5 cut(s) 23, 312, 753, 999, 1074
BveI ACCTGC 1 cut(s) 1189
Cac8I GCNNGC 5 cut(s) 688, 900, 1013, 1034, 1057
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 3 cut(s) 152, 174, 596
Csp6I GTAC 2 cut(s) 358, 871
CspCI CAANNNNNGTGG 2 cut(s) 520, 555
CviAII CATG 8 cut(s) 460, 496, 687, 764, 854, 890, 1033, 1088
CviQI GTAC 2 cut(s) 358, 871
DdeI CTNAG 8 cut(s) 15, 144, 398, 423, 470, 627, 831, 1077
DpnI GATC 9 cut(s) 91, 130, 180, 309, 355, 396, 527, 933, 972
DpnII GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
DraI TTTAAA 1 cut(s) 574
DraIII CACNNNGTG 1 cut(s) 1012
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 167
Eco147I AGGCCT 2 cut(s) 375, 844
Eco24I GRGCYC 1 cut(s) 169
Eco31I GGTCTC 2 cut(s) 55, 466
Eco47I GGWCC 2 cut(s) 152, 596
Eco53kI GAGCTC 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 364
EcoRI GAATTC 2 cut(s) 157, 792
EcoRII CCWGG 6 cut(s) 97, 244, 375, 598, 667, 844
EcoT38I GRGCYC 1 cut(s) 169
FaeI CATG 8 cut(s) 463, 499, 690, 767, 857, 893, 1036, 1091
FaqI GGGAC 1 cut(s) 354
FatI CATG 8 cut(s) 459, 495, 686, 763, 853, 889, 1032, 1087
FauNDI CATATG 1 cut(s) 1144
Fnu4HI GCNGC 9 cut(s) 39, 222, 225, 456, 726, 903, 1068, 1149, 1208
FokI GGATG 2 cut(s) 892, 1142
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 9 cut(s) 39, 222, 225, 456, 726, 903, 1068, 1149, 1208
FspBI CTAG 5 cut(s) 303, 512, 644, 1056, 1097
GlaI GCGC 1 cut(s) 220
GluI GCNGC 9 cut(s) 39, 222, 225, 456, 726, 903, 1068, 1149, 1208
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 3 cut(s) 176, 375, 844
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 221
Hin1II CATG 8 cut(s) 463, 499, 690, 767, 857, 893, 1036, 1091
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 4 cut(s) 647, 664, 672, 751
HpaII CCGG 1 cut(s) 138
HphI GGTGA 3 cut(s) 341, 376, 928
Hpy188I TCNGA 5 cut(s) 128, 133, 156, 471, 879
Hpy188III TCNNGA 7 cut(s) 162, 407, 644, 797, 821, 935, 1097
Hpy99I CGWCG 2 cut(s) 174, 235
HpyAV CCTTC 4 cut(s) 90, 275, 518, 606
HpyCH4III ACNGT 4 cut(s) 10, 316, 539, 1171
HpyCH4IV ACGT 3 cut(s) 277, 640, 869
HpyCH4V TGCA 4 cut(s) 203, 898, 1032, 1067
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 173, 209, 218, 233, 769, 850
HpyF3I CTNAG 8 cut(s) 15, 144, 398, 423, 470, 627, 831, 1077
HpySE526I ACGT 3 cut(s) 277, 640, 869
Hsp92II CATG 8 cut(s) 463, 499, 690, 767, 857, 893, 1036, 1091
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
LmnI GCTCC 4 cut(s) 26, 452, 552, 850
Lsp1109I GCAGC 6 cut(s) 25, 208, 442, 712, 889, 1079
LweI GCATC 4 cut(s) 124, 245, 885, 1090
MaeI CTAG 5 cut(s) 303, 512, 644, 1056, 1097
MaeII ACGT 3 cut(s) 277, 640, 869
MaeIII GTNAC 4 cut(s) 364, 856, 1165, 1192
MalI GATC 9 cut(s) 91, 130, 180, 309, 355, 396, 527, 933, 972
MboI GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
MboII GAAGA 7 cut(s) 302, 305, 344, 815, 965, 1009, 1113
MflI RGATCY 5 cut(s) 89, 128, 307, 394, 525
MhlI GDGCHC 3 cut(s) 169, 252, 633
MluCI AATT 7 cut(s) 157, 186, 477, 576, 792, 988, 1047
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 2 cut(s) 81, 555
MseI TTAA 2 cut(s) 519, 573
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 7 cut(s) 99, 139, 246, 377, 600, 669, 846
MvaI CCWGG 6 cut(s) 99, 246, 377, 600, 669, 846
MvnI CGCG 1 cut(s) 1011
MwoI GCNNNNNNNGC 7 cut(s) 35, 173, 209, 218, 233, 769, 850
NciI CCSGG 1 cut(s) 139
NdeI CATATG 1 cut(s) 1144
NdeII GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
NheI GCTAGC 1 cut(s) 1055
NlaIII CATG 8 cut(s) 463, 499, 690, 767, 857, 893, 1036, 1091
NlaIV GGNNCC 2 cut(s) 153, 309
NmuCI GTSAC 4 cut(s) 364, 856, 1165, 1192
NspI RCATGY 4 cut(s) 690, 767, 857, 1036
NspV TTCGAA 1 cut(s) 733
PaeI GCATGC 2 cut(s) 690, 1036
PasI CCCWGGG 1 cut(s) 98
PceI AGGCCT 2 cut(s) 375, 844
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 3 cut(s) 664, 672, 751
PfoI TCCNGGA 1 cut(s) 667
PkrI GCNGC 9 cut(s) 40, 223, 226, 457, 727, 904, 1069, 1150, 1209
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
Ppu21I YACGTR 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 169
Psp6I CCWGG 6 cut(s) 97, 244, 375, 598, 667, 844
PspEI GGTNACC 1 cut(s) 364
PspGI CCWGG 6 cut(s) 97, 244, 375, 598, 667, 844
PspN4I GGNNCC 2 cut(s) 153, 309
PspPI GGNCC 3 cut(s) 152, 174, 596
PstI CTGCAG 1 cut(s) 1069
PsuI RGATCY 5 cut(s) 89, 128, 307, 394, 525
RsaI GTAC 2 cut(s) 359, 872
RsaNI GTAC 2 cut(s) 358, 871
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 519, 573
SatI GCNGC 9 cut(s) 39, 222, 225, 456, 726, 903, 1068, 1149, 1208
Sau3AI GATC 9 cut(s) 89, 128, 178, 307, 353, 394, 525, 931, 970
Sau96I GGNCC 3 cut(s) 152, 174, 596
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 7 cut(s) 99, 139, 246, 377, 600, 669, 846
SduI GDGCHC 3 cut(s) 169, 252, 633
SfaNI GCATC 4 cut(s) 124, 245, 885, 1090
SfcI CTRYAG 2 cut(s) 6, 1065
SfuI TTCGAA 1 cut(s) 733
SinI GGWCC 2 cut(s) 152, 596
SmlI CTYRAG 3 cut(s) 61, 782, 821
SmoI CTYRAG 3 cut(s) 61, 782, 821
SphI GCATGC 2 cut(s) 690, 1036
Sse9I AATT 7 cut(s) 157, 186, 477, 576, 792, 988, 1047
SseBI AGGCCT 2 cut(s) 375, 844
SsiI CCGC 4 cut(s) 224, 1009, 1036, 1149
SspMI CTAG 5 cut(s) 303, 512, 644, 1056, 1097
SstI GAGCTC 1 cut(s) 169
StuI AGGCCT 2 cut(s) 375, 844
StyD4I CCNGG 7 cut(s) 97, 137, 244, 375, 598, 667, 844
TaaI ACNGT 4 cut(s) 10, 316, 539, 1171
TaiI ACGT 3 cut(s) 280, 643, 872
TaqI TCGA 6 cut(s) 230, 239, 483, 662, 733, 1023
TaqII GACCGA 1 cut(s) 37
TasI AATT 7 cut(s) 157, 186, 477, 576, 792, 988, 1047
TauI GCSGC 2 cut(s) 227, 1151
TfiI GAWTC 3 cut(s) 664, 672, 751
Tru1I TTAA 2 cut(s) 519, 573
Tru9I TTAA 2 cut(s) 519, 573
TscAI CASTG 5 cut(s) 23, 319, 753, 999, 1081
TseFI GTSAC 4 cut(s) 364, 856, 1165, 1192
TseI GCWGC 7 cut(s) 38, 221, 455, 725, 902, 1067, 1207
Tsp45I GTSAC 4 cut(s) 364, 856, 1165, 1192
TspDTI ATGAA 3 cut(s) 506, 734, 816
TspRI CASTG 5 cut(s) 23, 319, 753, 999, 1081
VpaK11BI GGWCC 2 cut(s) 152, 596
XapI RAATTY 4 cut(s) 157, 576, 792, 988
XbaI TCTAGA 2 cut(s) 643, 1096
XceI RCATGY 4 cut(s) 690, 767, 857, 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XspI CTAG 5 cut(s) 303, 512, 644, 1056, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.