Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013342

Physical Location & Seq

Genomic Coordinates Forward (+)

14830626 .. 14833417

Gene Structure 2792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGATCCAATATCAGCGGTTAGCGAAGAGCTGGCTGAGATCGAAGGACAAATCAATGACATCTTCCGTGCTTTATCAAATGGATTCCAGAAGCTGGAGAAGATCAAAGATGCTAATAGGCAGAGTAGGCAGCTGGAAGAACTCACTGACAAAATGCGTGACTGTAAGAGCCTTATTAAAGATTTCGATAGGGAAATCAAAAGCTTGGAAAGCGGTAATGATGCCAGCACTAACCGGATGTTGAACGATAGACGACAATCTATGGTTAAGGAACTCAACTCATATGTTGCTCTTAAGAAGAAATACTCATCAAACCTAGCAAGCAATAACAAGCGAGTAGATCTTTTCGATGGACCTGGAGAAGAACACATGGAAGAAAATGTCTTATTAGCTTCAAACATGTCCAATCAAGAGTTAATGGATAAAGGAAACTCAATGATGGATGACACAGATCAAGCTATTGAGAGAGGGAAAAAGATTGTACAAGAAACTATAAATGTGGGAACAGATACTTCAGCAGCTCTCAAGGCTCAGACCGAGCAAATGAGTAGAGTTGTCAATGAGCTCGATTCTATTCATTTCTCACTCAAGAAAGCCTCCAAGCTGGTCAAGGAAATTGGTAGGCAGGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCTTATCGTCATTGGTGTCATAGCAATCATCATCGTCAAGATTGTGAACCCAAACAACAAAGACATTCGCGACATACCGGGTGTGGGCCTAGCTCCACCAGCCATGAACAGACGTCTGCTCTGGAACCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0022402 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032506 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec20

Protein Analysis

265

Amino Acids

29.87

Weight (kDa)

6.04

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec20	PF03908	152 - 232	1.3e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35190
fragaria_vesca	FvH4_5g20760 FvH4_5g20760
malus_domestica	MD04G1053700.v1.1 MD11G1036500.v1.1
prunus_persica	Prupe.5G052300_v2.0.a1 Prupe.5G052300_v2.0.a1
pyrus_communis	pycom04g04680 pycom11g03010
rosa_chinensis	RchiOBHm_Chr7g0206541
rosa_laevigata	RLG00000003304
rosa_multiflora	Rmu_sc0005065.1_g000056
rosa_roxburghii	Rroxscaffold_3G00251420
rosa_rugosa	Rorug07G0098300 Rorug07G0098400
rosa_samantha	Rh7AG229800 Rh7CG244700
rosa_wichuraiana	Rw7G019810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	778
Acc36I	ACCTGC	1 cut(s)	616
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccII	CGCG	1 cut(s)	732
AciI	CCGC	2 cut(s)	17, 213
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	498
AcyI	GRCGYC	1 cut(s)	775
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	94, 746
AflII	CTTAAG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	2 cut(s)	244, 396
AjnI	CCWGG	1 cut(s)	355
Alw21I	GWGCWC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	748
ApeKI	GCWGC	2 cut(s)	130, 518
AspS9I	GGNCC	2 cut(s)	353, 748
AsuC2I	CCSGG	1 cut(s)	741
AvaII	GGWCC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	142, 530
BccI	CCATC	2 cut(s)	344, 433
BciT130I	CCWGG	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	741
BfaI	CTAG	2 cut(s)	317, 752
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	616
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	2 cut(s)	131, 519
BlsI	GCNGC	2 cut(s)	132, 520
Bme1390I	CCNGG	2 cut(s)	357, 741
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	353, 748
BmiI	GGNNCC	2 cut(s)	6, 788
BmrFI	CCNGG	2 cut(s)	357, 741
BmsI	GCATC	2 cut(s)	100, 211
BpmI	CTGGAG	2 cut(s)	116, 378
BpuEI	CTTGAG	2 cut(s)	509, 572
BpuMI	CCSGG	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	775
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 746
BseBI	CCWGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	243, 448
BseLI	CCNNNNNNNGG	2 cut(s)	94, 746
BseMII	CTCAG	2 cut(s)	27, 545
BseXI	GCAGC	2 cut(s)	142, 530
Bsh1236I	CGCG	1 cut(s)	732
BshFI	GGCC	1 cut(s)	750
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	2 cut(s)	235, 740
BslI	CCNNNNNNNGG	2 cut(s)	94, 746
BsnI	GGCC	1 cut(s)	750
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	5 cut(s)	4, 39, 102, 340, 451
Bsp68I	TCGCGA	1 cut(s)	732
BspACI	CCGC	2 cut(s)	17, 213
BspANI	GGCC	1 cut(s)	750
BspCNI	CTCAG	2 cut(s)	28, 544
BspFNI	CGCG	1 cut(s)	732
BspLI	GGNNCC	2 cut(s)	6, 788
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	481
BssMI	GATC	5 cut(s)	4, 39, 102, 340, 451
BssNI	GRCGYC	1 cut(s)	775
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	775
BstAFI	CTTAAG	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	481
BstC8I	GCNNGC	3 cut(s)	33, 226, 322
BstDEI	CTNAG	2 cut(s)	36, 531
BstF5I	GGATG	2 cut(s)	243, 448
BstFNI	CGCG	1 cut(s)	732
BstKTI	GATC	5 cut(s)	7, 42, 105, 343, 454
BstMBI	GATC	5 cut(s)	4, 39, 102, 340, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 210, 527, 761
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	2 cut(s)	355, 739
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	2 cut(s)	142, 530
BstX2I	RGATCY	2 cut(s)	4, 340
BstYI	RGATCY	2 cut(s)	4, 340
BsuRI	GGCC	1 cut(s)	750
BtsCI	GGATG	2 cut(s)	243, 448
BtsIMutI	CAGTG	2 cut(s)	144, 633
BtuMI	TCGCGA	1 cut(s)	732
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	3 cut(s)	33, 226, 322
CaiI	CAGNNNCTG	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	353, 748
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	3 cut(s)	370, 400, 766
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	2 cut(s)	36, 531
DpnI	GATC	5 cut(s)	6, 41, 104, 342, 453
DpnII	GATC	5 cut(s)	4, 39, 102, 340, 451
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	567
FaeI	CATG	3 cut(s)	373, 403, 769
FatI	CATG	3 cut(s)	369, 399, 765
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	131, 519
FokI	GGATG	2 cut(s)	250, 455
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	131, 519
FspBI	CTAG	2 cut(s)	317, 752
GluI	GCNGC	2 cut(s)	131, 519
GsuI	CTGGAG	2 cut(s)	116, 378
HaeIII	GGCC	1 cut(s)	750
HapII	CCGG	2 cut(s)	235, 740
Hin1I	GRCGYC	1 cut(s)	775
Hin1II	CATG	3 cut(s)	373, 403, 769
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	2 cut(s)	84, 569
HpaII	CCGG	2 cut(s)	235, 740
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	1 cut(s)	534
Hpy188III	TCNNGA	6 cut(s)	88, 410, 589, 700, 731, 784
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 210, 527, 761
HpyF3I	CTNAG	2 cut(s)	36, 531
HpySE526I	ACGT	1 cut(s)	775
Hsp92I	GRCGYC	1 cut(s)	775
Hsp92II	CATG	3 cut(s)	373, 403, 769
Kzo9I	GATC	5 cut(s)	4, 39, 102, 340, 451
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	2 cut(s)	142, 530
LweI	GCATC	2 cut(s)	100, 211
MaeI	CTAG	2 cut(s)	317, 752
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	6, 41, 104, 342, 453
MboI	GATC	5 cut(s)	4, 39, 102, 340, 451
MboII	GAAGA	7 cut(s)	38, 55, 112, 149, 310, 374, 386
MflI	RGATCY	2 cut(s)	4, 340
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	1 cut(s)	615
MnlI	CCTC	2 cut(s)	461, 607
MseI	TTAA	4 cut(s)	177, 267, 294, 416
MspA1I	CMGCKG	2 cut(s)	17, 133
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	2 cut(s)	235, 740
MspR9I	CCNGG	2 cut(s)	357, 741
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	4 cut(s)	127, 210, 527, 761
NciI	CCSGG	1 cut(s)	741
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	5 cut(s)	4, 39, 102, 340, 451
NlaIII	CATG	3 cut(s)	373, 403, 769
NlaIV	GGNNCC	2 cut(s)	6, 788
NmuCI	GTSAC	1 cut(s)	158
NruI	TCGCGA	1 cut(s)	732
NspI	RCATGY	1 cut(s)	403
PciI	ACATGT	1 cut(s)	399
PciSI	GCTCTTC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	84, 569
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	132, 520
PscI	ACATGT	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	6, 788
PspPI	GGNCC	2 cut(s)	353, 748
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	2 cut(s)	4, 340
PvuII	CAGCTG	1 cut(s)	133
RruI	TCGCGA	1 cut(s)	732
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	4 cut(s)	177, 267, 294, 416
SatI	GCNGC	2 cut(s)	131, 519
Sau3AI	GATC	5 cut(s)	4, 39, 102, 340, 451
Sau96I	GGNCC	2 cut(s)	353, 748
ScrFI	CCNGG	2 cut(s)	357, 741
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	100, 211
SinI	GGWCC	1 cut(s)	353
SmlI	CTYRAG	3 cut(s)	293, 524, 587
SmoI	CTYRAG	3 cut(s)	293, 524, 587
Sse9I	AATT	1 cut(s)	615
SsiI	CCGC	2 cut(s)	17, 213
SspMI	CTAG	2 cut(s)	317, 752
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	355, 739
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	4 cut(s)	42, 186, 348, 567
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	1 cut(s)	615
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	2 cut(s)	84, 569
Tru1I	TTAA	4 cut(s)	177, 267, 294, 416
Tru9I	TTAA	4 cut(s)	177, 267, 294, 416
TscAI	CASTG	2 cut(s)	151, 640
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	130, 518
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	566, 782
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	151, 640
Van91I	CCANNNNNTGG	1 cut(s)	94
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	353
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	2 cut(s)	317, 752
ZraI	GACGTC	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.