AT2G35290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015484
Physical Location & Seq
Reverse (-)
14861199 .. 14862178
980 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35290.1

Sequence Viewer

Length: 366 bp
ATGGGTTGTCTGATTTCTCCTGTAATGAAACTCCGTCGTCTCTCCTCAGCCGACTCGCGGCGATTTGCATACCGGAATCTCGCCGAGAATATGGAAGATCCAGTCATAAGGGTGGTGGTAGGGAAGGAGAAGAAGGAGTTCATGGTCGAACCGTATGTACTCGAAGAGTACCCGTTCAGAGTCTTGATAGGTTCAGCTAAGGATCGTGCCAAGAACCGGTTAAACCGGACCGGTAGAGTGGTGTGGCTTGATCATGTCGACTCGATCTTATTTGAGCACTTGCTGTGGCTTCTTCGGAACGATGCCTCTACGTTTTCGGATTTGGATGTTCTCGAGATCATTGAATTCTATGCTCAAGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

121

Amino Acids

14.18

Weight (kDa)

6.12

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35290
fragaria_vesca FvH4_5g21990
malus_domestica MD06G1033600.v1.1 MD16G1275100.v1.1
prunus_persica Prupe.5G037100_v2.0.a1
pyrus_communis pycom06g02770 pycom16g24500
rosa_chinensis RchiOBHm_Chr7g0209491
rosa_laevigata RLG00000003124
rosa_multiflora Rmu_sc0000243.1_g000003
rosa_roxburghii Rroxscaffold_3G00249320
rosa_rugosa Rorug07G0113900
rosa_samantha Rh7AG247900 Rh7CG263400 Rh7DG253800
rosa_wichuraiana Rw7G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 58
AciI CCGC 1 cut(s) 58
AclWI GGATC 2 cut(s) 92, 210
AcsI RAATTY 1 cut(s) 344
AfaI GTAC 2 cut(s) 159, 170
AfiI CCNNNNNNNGG 2 cut(s) 57, 216
AgeI ACCGGT 2 cut(s) 216, 230
AgsI TTSAA 1 cut(s) 344
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 2 cut(s) 92, 210
Ama87I CYCGRG 1 cut(s) 332
ApoI RAATTY 1 cut(s) 344
AsiGI ACCGGT 2 cut(s) 216, 230
Asp700I GAANNNNTTC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 228
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 46
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 44
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 228
BmsI GCATC 1 cut(s) 292
Bpu10I CCTNAGC 2 cut(s) 46, 198
BpuEI CTTGAG 1 cut(s) 339
BsaWI WCCGGW 4 cut(s) 72, 216, 225, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 216
Bse118I RCCGGY 2 cut(s) 216, 230
Bse1I ACTGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 57, 216
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 58
BshTI ACCGGT 2 cut(s) 216, 230
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 4 cut(s) 73, 217, 226, 231
BslI CCNNNNNNNGG 2 cut(s) 57, 216
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 5 cut(s) 97, 202, 250, 264, 336
BspACI CCGC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 58
BspPI GGATC 2 cut(s) 92, 210
BsrFI RCCGGY 2 cut(s) 216, 230
BsrI ACTGG 1 cut(s) 101
BssAI RCCGGY 2 cut(s) 216, 230
BssMI GATC 5 cut(s) 97, 202, 250, 264, 336
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 46, 198
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 1 cut(s) 58
BstKTI GATC 5 cut(s) 100, 205, 253, 267, 339
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 5 cut(s) 97, 202, 250, 264, 336
BstUI CGCG 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BtsCI GGATG 1 cut(s) 331
Cfr10I RCCGGY 2 cut(s) 216, 230
Cfr13I GGNCC 1 cut(s) 228
CpoI CGGWCCG 1 cut(s) 228
Csp6I GTAC 2 cut(s) 158, 169
CspAI ACCGGT 2 cut(s) 216, 230
CspI CGGWCCG 1 cut(s) 228
CviAII CATG 2 cut(s) 142, 254
CviJI RGCY 4 cut(s) 50, 197, 247, 289
CviKI_1 RGCY 4 cut(s) 50, 197, 247, 289
CviQI GTAC 2 cut(s) 158, 169
DdeI CTNAG 2 cut(s) 46, 198
DpnI GATC 5 cut(s) 99, 204, 252, 266, 338
DpnII GATC 5 cut(s) 97, 202, 250, 264, 336
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 2 cut(s) 145, 257
FaiI YATR 7 cut(s) 70, 92, 107, 143, 156, 255, 351
FatI CATG 2 cut(s) 141, 253
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HapII CCGG 4 cut(s) 73, 217, 226, 231
Hin1II CATG 2 cut(s) 145, 257
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 53, 76, 180, 260
HpaII CCGG 4 cut(s) 73, 217, 226, 231
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 12, 179, 297, 319
Hpy188III TCNNGA 4 cut(s) 184, 332, 334, 356
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 118, 127
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 46, 198
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 2 cut(s) 145, 257
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 5 cut(s) 97, 202, 250, 264, 336
LpnPI CCDG 6 cut(s) 33, 86, 114, 230, 239, 244
LweI GCATC 1 cut(s) 292
MaeII ACGT 1 cut(s) 311
MalI GATC 5 cut(s) 99, 204, 252, 266, 338
MboI GATC 5 cut(s) 97, 202, 250, 264, 336
MboII GAAGA 4 cut(s) 107, 142, 176, 284
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 1 cut(s) 344
MlyI GAGTC 3 cut(s) 47, 189, 254
MnlI CCTC 2 cut(s) 55, 316
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 4 cut(s) 73, 217, 226, 231
MvnI CGCG 1 cut(s) 58
NdeII GATC 5 cut(s) 97, 202, 250, 264, 336
NlaIII CATG 2 cut(s) 145, 257
NmeAIII GCCGAG 1 cut(s) 109
PaeR7I CTCGAG 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 76
PinAI ACCGGT 2 cut(s) 216, 230
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 3 cut(s) 47, 188, 254
PpsI GAGTC 3 cut(s) 47, 188, 254
PspPI GGNCC 1 cut(s) 228
PsrI GAACNNNNNNTAC 2 cut(s) 141, 173
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 2 cut(s) 159, 170
RsaNI GTAC 2 cut(s) 158, 169
RseI CAYNNNNRTG 1 cut(s) 110
Rsr2I CGGWCCG 1 cut(s) 228
RsrII CGGWCCG 1 cut(s) 228
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 5 cut(s) 97, 202, 250, 264, 336
Sau96I GGNCC 1 cut(s) 228
SchI GAGTC 3 cut(s) 47, 189, 254
SduI GDGCHC 1 cut(s) 279
SetI ASST 3 cut(s) 193, 199, 314
SfaNI GCATC 1 cut(s) 292
Sfr274I CTCGAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 332, 354
SmoI CTYRAG 2 cut(s) 332, 354
Sse9I AATT 1 cut(s) 344
SsiI CCGC 1 cut(s) 58
TaaI ACNGT 1 cut(s) 153
TaiI ACGT 1 cut(s) 314
TaqI TCGA 5 cut(s) 147, 162, 258, 263, 333
TasI AATT 1 cut(s) 344
TatI WGTACW 1 cut(s) 157
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 41, 130
TspGWI ACGGA 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 1 cut(s) 344
XhoI CTCGAG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.