FvH4_5g21990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015484
Physical Location & Seq
Reverse (-)
13368135 .. 13368527
393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21990.t1

Sequence Viewer

Length: 393 bp
ATGGCCTGCTGCTTGGCCCTGCCGATTTCCATGTTCAGAAAGAGGTGCACGGGGTCACGGCTAGGCTACAGGCCATTAACAGAAGAAGGGTTTGGCGAGACAGAGAGTCCGGTGACGGTGGTGGTCGGGAAGGAGAAGAGGGAGTTCCTGGTTGACCCTTTTGTGCTGGAAGAGAGCCCTTTTCGGGTTTTGATCGAGACGATGAACAAGAGCAAGGAGAAGGTGAACTTACGTGATCGTCGACCTGTTGTCTATGGCAAGGAGAGGGTGGTTTTTGTGGATGTCGATGCTATTTTGTTTGAGCACATGTTGTGGCTGTTGTATAATGATTGCTCTTCTTTGTTTAAGCTCAATCTCAAAGAGATTATTGACTTCTATGCTCAAGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

131

Amino Acids

15.18

Weight (kDa)

5.91

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35290
fragaria_vesca FvH4_5g21990
malus_domestica MD06G1033600.v1.1 MD16G1275100.v1.1
prunus_persica Prupe.5G037100_v2.0.a1
pyrus_communis pycom06g02770 pycom16g24500
rosa_chinensis RchiOBHm_Chr7g0209491
rosa_laevigata RLG00000003124
rosa_multiflora Rmu_sc0000243.1_g000003
rosa_roxburghii Rroxscaffold_3G00249320
rosa_rugosa Rorug07G0113900
rosa_samantha Rh7AG247900 Rh7CG263400 Rh7DG253800
rosa_wichuraiana Rw7G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 306
AhdI GACNNNNNGTC 2 cut(s) 105, 248
AjnI CCWGG 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw21I GWGCWC 2 cut(s) 50, 306
Alw26I GTCTC 2 cut(s) 92, 191
Alw44I GTGCAC 1 cut(s) 46
AoxI GGCC 3 cut(s) 3, 15, 71
ApaLI GTGCAC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 124, 235
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 50, 306
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 92, 191
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 149
BmeRI GACNNNNNGTC 2 cut(s) 105, 248
BmgT120I GGNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 50
BshFI GGCC 3 cut(s) 5, 17, 73
BsiHKAI GWGCWC 2 cut(s) 50, 306
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 92, 191
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 3 cut(s) 5, 17, 73
Bsp1286I GDGCHC 3 cut(s) 50, 179, 306
Bsp143I GATC 2 cut(s) 192, 235
BspANI GGCC 3 cut(s) 5, 17, 73
BspQI GCTCTTC 1 cut(s) 340
BssMI GATC 2 cut(s) 192, 235
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 3 cut(s) 131, 165, 340
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 195, 238
BstMAI GTCTC 2 cut(s) 92, 191
BstMBI GATC 2 cut(s) 192, 235
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 67
BstSLI GKGCMC 1 cut(s) 50
BsuRI GGCC 3 cut(s) 5, 17, 73
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 16
CviAII CATG 2 cut(s) 31, 307
CviJI RGCY 8 cut(s) 5, 17, 61, 66, 73, 177, 316, 349
CviKI_1 RGCY 8 cut(s) 5, 17, 61, 66, 73, 177, 316, 349
DpnI GATC 2 cut(s) 194, 237
DpnII GATC 2 cut(s) 192, 235
DriI GACNNNNNGTC 2 cut(s) 105, 248
Eam1104I CTCTTC 3 cut(s) 131, 165, 340
Eam1105I GACNNNNNGTC 2 cut(s) 105, 248
EarI CTCTTC 3 cut(s) 131, 165, 340
Eco24I GRGCYC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 2 cut(s) 34, 310
FaiI YATR 5 cut(s) 32, 255, 308, 324, 378
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 2 cut(s) 30, 306
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 1 cut(s) 62
GluI GCNGC 1 cut(s) 10
HaeIII GGCC 3 cut(s) 5, 17, 73
HapII CCGG 1 cut(s) 110
Hin1II CATG 2 cut(s) 34, 310
HincII GTYRAC 2 cut(s) 154, 242
HindII GTYRAC 2 cut(s) 154, 242
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 124, 235
Hpy166II GTNNAC 4 cut(s) 48, 154, 226, 242
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 127, 196, 383
Hpy8I GTNNAC 4 cut(s) 48, 154, 226, 242
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 3 cut(s) 80, 124, 214
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 2 cut(s) 34, 310
Kzo9I GATC 2 cut(s) 192, 235
LguI GCTCTTC 1 cut(s) 340
LpnPI CCDG 8 cut(s) 19, 32, 55, 123, 134, 152, 161, 258
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 54, 112
MalI GATC 2 cut(s) 194, 237
MboI GATC 2 cut(s) 192, 235
MboII GAAGA 4 cut(s) 95, 148, 182, 327
MhlI GDGCHC 3 cut(s) 50, 179, 306
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 3 cut(s) 36, 132, 258
MseI TTAA 2 cut(s) 77, 345
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
NdeII GATC 2 cut(s) 192, 235
NlaIII CATG 2 cut(s) 34, 310
NmuCI GTSAC 2 cut(s) 54, 112
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Ppu21I YACGTR 1 cut(s) 233
PscI ACATGT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 1 cut(s) 16
SalI GTCGAC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 340
SaqAI TTAA 2 cut(s) 77, 345
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 192, 235
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 3 cut(s) 50, 179, 306
SetI ASST 5 cut(s) 47, 225, 235, 247, 351
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 235
TaqI TCGA 3 cut(s) 195, 241, 285
Tru1I TTAA 2 cut(s) 77, 345
Tru9I TTAA 2 cut(s) 77, 345
TseFI GTSAC 2 cut(s) 54, 112
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 2 cut(s) 54, 112
TspDTI ATGAA 1 cut(s) 218
VneI GTGCAC 1 cut(s) 46
XceI RCATGY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 241
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.