Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015484

Physical Location & Seq

Genomic Coordinates Reverse (-)

26461378 .. 26461767

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG253800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCTGCTTGGCCCTGCCGATTTCCATGTTCAGAAAGAGGTGCATGGGGTCACGGCTAGGCTACCGGCCATTAACCGAAGATGGGTTTGGCGAGATGGAGAGTCCGGTGACGGTGGTGGTCGGGAAGGAGAAGAGGGAGTTCCTGGTCGACCCTTTTGTGCTGGAAGAGAGCCCTTTTCGGGTTTTGATCGAGACGATGAACAAGAACAAGGAGAGGGTGAACTTTCGTGATCGTCGACCTGTGGTCTATGGCAAGGAGAGGGTGGTTTTTGTGGATGTCGATGCTATTCTGTTTGAGCATATGTTATGGTTGTTGTATAATGATTGCTCTTCTTTGTTTAAGCTCAATCTCAAAGAGATTATTGACTTCTATGCTCAAGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

129

Amino Acids

15.21

Weight (kDa)

5.9

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35290
fragaria_vesca	FvH4_5g21990
malus_domestica	MD06G1033600.v1.1 MD16G1275100.v1.1
prunus_persica	Prupe.5G037100_v2.0.a1
pyrus_communis	pycom06g02770 pycom16g24500
rosa_chinensis	RchiOBHm_Chr7g0209491
rosa_laevigata	RLG00000003124
rosa_multiflora	Rmu_sc0000243.1_g000003
rosa_roxburghii	Rroxscaffold_3G00249320
rosa_rugosa	Rorug07G0113900
rosa_samantha	Rh7AG247900 Rh7CG263400 Rh7DG253800
rosa_wichuraiana	Rw7G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	150, 238
AcoI	YGGCCR	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	84, 181
AhdI	GACNNNNNGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	3 cut(s)	3, 12, 68
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	121, 232
BanII	GRGCYC	1 cut(s)	176
BccI	CCATC	2 cut(s)	77, 91
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	59
BglI	GCCNNNNNGGC	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	146
BmeRI	GACNNNNNGTC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 181
Bse118I	RCCGGY	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	84, 181
BshFI	GGCC	3 cut(s)	5, 14, 70
BsiSI	CCGG	2 cut(s)	67, 107
BslI	CCNNNNNNNGG	2 cut(s)	84, 181
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	5, 14, 70
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	189, 232
BspANI	GGCC	3 cut(s)	5, 14, 70
BspQI	GCTCTTC	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	2 cut(s)	189, 232
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	3 cut(s)	128, 162, 337
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	192, 235
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	189, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	5, 14, 70
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	13
CviAII	CATG	2 cut(s)	28, 46
CviJI	RGCY	7 cut(s)	5, 14, 58, 63, 70, 174, 346
CviKI_1	RGCY	7 cut(s)	5, 14, 58, 63, 70, 174, 346
DpnI	GATC	2 cut(s)	191, 234
DpnII	GATC	2 cut(s)	189, 232
DriI	GACNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	68
Eam1104I	CTCTTC	3 cut(s)	128, 162, 337
Eam1105I	GACNNNNNGTC	1 cut(s)	245
EarI	CTCTTC	3 cut(s)	128, 162, 337
Eco24I	GRGCYC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	2 cut(s)	31, 49
FaiI	YATR	8 cut(s)	29, 47, 252, 303, 305, 310, 321, 375
FatI	CATG	2 cut(s)	27, 45
FauNDI	CATATG	1 cut(s)	303
FblI	GTMKAC	2 cut(s)	150, 238
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	5, 14, 70
HapII	CCGG	2 cut(s)	67, 107
Hin1II	CATG	2 cut(s)	31, 49
HincII	GTYRAC	2 cut(s)	151, 239
HindII	GTYRAC	2 cut(s)	151, 239
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	67, 107
HphI	GGTGA	2 cut(s)	121, 232
Hpy166II	GTNNAC	3 cut(s)	151, 223, 239
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	4 cut(s)	124, 193, 230, 380
Hpy8I	GTNNAC	3 cut(s)	151, 223, 239
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	31, 49
Kzo9I	GATC	2 cut(s)	189, 232
LguI	GCTCTTC	1 cut(s)	337
LpnPI	CCDG	8 cut(s)	19, 29, 80, 120, 131, 149, 158, 255
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	51, 109
MalI	GATC	2 cut(s)	191, 234
MboI	GATC	2 cut(s)	189, 232
MboII	GAAGA	4 cut(s)	92, 145, 179, 324
MhlI	GDGCHC	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	4 cut(s)	33, 129, 210, 255
MseI	TTAA	2 cut(s)	74, 342
MspI	CCGG	2 cut(s)	67, 107
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	2 cut(s)	189, 232
NlaIII	CATG	2 cut(s)	31, 49
NmuCI	GTSAC	2 cut(s)	51, 109
PciSI	GCTCTTC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	235
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	13
SalI	GTCGAC	2 cut(s)	149, 237
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	74, 342
Sau3AI	GATC	2 cut(s)	189, 232
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	3 cut(s)	44, 244, 348
SfaNI	GCATC	1 cut(s)	274
SfiI	GGCCNNNNNGGCC	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	4 cut(s)	150, 192, 238, 282
Tru1I	TTAA	2 cut(s)	74, 342
Tru9I	TTAA	2 cut(s)	74, 342
TseFI	GTSAC	2 cut(s)	51, 109
Tsp45I	GTSAC	2 cut(s)	51, 109
TspDTI	ATGAA	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	150, 238
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.