Rw7G020920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015484
Physical Location & Seq
Reverse (-)
24076441 .. 24077161
721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020920.1

Sequence Viewer

Length: 390 bp
ATGGCCTGCTTGGCCCTGCCGATTTCCATGTTCAGAAAGAGGTGCATGGGGTCACGGCTAGGCTACCGGCCATTAACCGAAGATGGGTTTGGCGAGATGGAGAGTCCGGTGACGGTGGTGGTCGGGAAGGAGAAGAGGGAGTTCCTGGTCGACCCTTTTGTGCTGGAAGAGAGCCCTTTTCGGGTTTTGATCGAGACGATGCACAAGAACAAGGAGAGGGTGAACTTTCGTGATCGTCGATCTGTGGTCTATGGCAAGGAGAGGGTGGTTTTTGTGGATGTCGATGCTATTCTGTTTGAGCATATGTTATGGTTGTTGTATAATGATTGCTCTTCTTTGTTTAAGCTCAATCTCAAAGAGATTATTGACTTCTATGCTCAAGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

129

Amino Acids

15.22

Weight (kDa)

6.14

Isoelectric Point (pI)

64.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35290
fragaria_vesca FvH4_5g21990
malus_domestica MD06G1033600.v1.1 MD16G1275100.v1.1
prunus_persica Prupe.5G037100_v2.0.a1
pyrus_communis pycom06g02770 pycom16g24500
rosa_chinensis RchiOBHm_Chr7g0209491
rosa_laevigata RLG00000003124
rosa_multiflora Rmu_sc0000243.1_g000003
rosa_roxburghii Rroxscaffold_3G00249320
rosa_rugosa Rorug07G0113900
rosa_samantha Rh7AG247900 Rh7CG263400 Rh7DG253800
rosa_wichuraiana Rw7G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 84, 181
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 3 cut(s) 3, 12, 68
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 121, 232
BanII GRGCYC 1 cut(s) 176
BccI CCATC 2 cut(s) 77, 91
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 59
BglI GCCNNNNNGGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 189, 274
BpuEI CTTGAG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 181
Bse118I RCCGGY 1 cut(s) 66
BseBI CCWGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 84, 181
BshFI GGCC 3 cut(s) 5, 14, 70
BsiSI CCGG 2 cut(s) 67, 107
BslI CCNNNNNNNGG 2 cut(s) 84, 181
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsnI GGCC 3 cut(s) 5, 14, 70
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 189, 232, 239
BspANI GGCC 3 cut(s) 5, 14, 70
BspQI GCTCTTC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 66
BssMI GATC 3 cut(s) 189, 232, 239
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 3 cut(s) 128, 162, 337
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 3 cut(s) 192, 235, 242
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 189, 232, 239
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BsuRI GGCC 3 cut(s) 5, 14, 70
BtsCI GGATG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 2 cut(s) 28, 46
CviJI RGCY 7 cut(s) 5, 14, 58, 63, 70, 174, 346
CviKI_1 RGCY 7 cut(s) 5, 14, 58, 63, 70, 174, 346
DpnI GATC 3 cut(s) 191, 234, 241
DpnII GATC 3 cut(s) 189, 232, 239
EaeI YGGCCR 1 cut(s) 68
Eam1104I CTCTTC 3 cut(s) 128, 162, 337
EarI CTCTTC 3 cut(s) 128, 162, 337
Eco24I GRGCYC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 2 cut(s) 31, 49
FaiI YATR 8 cut(s) 29, 47, 252, 303, 305, 310, 321, 375
FatI CATG 2 cut(s) 27, 45
FauNDI CATATG 1 cut(s) 303
FblI GTMKAC 1 cut(s) 150
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 176
FspBI CTAG 1 cut(s) 59
HaeIII GGCC 3 cut(s) 5, 14, 70
HapII CCGG 2 cut(s) 67, 107
Hin1II CATG 2 cut(s) 31, 49
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 103
HpaII CCGG 2 cut(s) 67, 107
HphI GGTGA 2 cut(s) 121, 232
Hpy166II GTNNAC 2 cut(s) 151, 223
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 4 cut(s) 124, 193, 230, 380
Hpy8I GTNNAC 2 cut(s) 151, 223
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 45, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 31, 49
Kzo9I GATC 3 cut(s) 189, 232, 239
LguI GCTCTTC 1 cut(s) 337
LpnPI CCDG 7 cut(s) 19, 29, 80, 120, 131, 149, 158
LweI GCATC 2 cut(s) 189, 274
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 51, 109
MalI GATC 3 cut(s) 191, 234, 241
MboI GATC 3 cut(s) 189, 232, 239
MboII GAAGA 4 cut(s) 92, 145, 179, 324
MhlI GDGCHC 1 cut(s) 176
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 4 cut(s) 33, 129, 210, 255
MseI TTAA 2 cut(s) 74, 342
MspI CCGG 2 cut(s) 67, 107
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 303
NdeII GATC 3 cut(s) 189, 232, 239
NlaIII CATG 2 cut(s) 31, 49
NmuCI GTSAC 2 cut(s) 51, 109
PciSI GCTCTTC 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspPI GGNCC 1 cut(s) 13
SalI GTCGAC 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 74, 342
Sau3AI GATC 3 cut(s) 189, 232, 239
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 176
SetI ASST 2 cut(s) 44, 348
SfaNI GCATC 2 cut(s) 189, 274
SfiI GGCCNNNNNGGCC 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 4 cut(s) 150, 192, 238, 282
Tru1I TTAA 2 cut(s) 74, 342
Tru9I TTAA 2 cut(s) 74, 342
TseFI GTSAC 2 cut(s) 51, 109
Tsp45I GTSAC 2 cut(s) 51, 109
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.