pycom06g02770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0015484
Physical Location & Seq
Reverse (-)
3357729 .. 3358572
844 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02770.1

Sequence Viewer

Length: 444 bp
ATGTCAATGAGGAACGCGCCAACAGCCAGCAGGCGCGGAAAACTCATTTGTTCAGTTTCAATGGCTTGCTTGGTCTTGCCAATCTCAATGCTGAAAAAGAGGTGCATGGGGTCACGGCTACACGGCTACCGGCCCTTAACCAAAGATGGGTTCGGCAACTCAGAGAATCCAGTGATCGTGGTCGTGGGGAAGGAGAAGAAGGAGTTCTTGGTAGACCCATTAGTACTAGAAGAGAACCCTTTTCGGGTTTTGATGGAGACGATGAACAAGGACAAGAAGGTGGAGAATTTTGATGATCGGACTGGTAAGGGAAGTAGGATGGTTTTTGTGGATGTTGATTCTATTCTGTTCGAGCACATGTTGTGGTTGATGTATAATGATTGGTCTTCTTTGTTTGAGCTCAATCTTAAGGAAATTATTGACTTCTATGCTCAAGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

148

Amino Acids

17.01

Weight (kDa)

7.69

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35290
fragaria_vesca FvH4_5g21990
malus_domestica MD06G1033600.v1.1 MD16G1275100.v1.1
prunus_persica Prupe.5G037100_v2.0.a1
pyrus_communis pycom06g02770 pycom16g24500
rosa_chinensis RchiOBHm_Chr7g0209491
rosa_laevigata RLG00000003124
rosa_multiflora Rmu_sc0000243.1_g000003
rosa_roxburghii Rroxscaffold_3G00249320
rosa_rugosa Rorug07G0113900
rosa_samantha Rh7AG247900 Rh7CG263400 Rh7DG253800
rosa_wichuraiana Rw7G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AccII CGCG 2 cut(s) 17, 36
AciI CCGC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 147, 244
AflII CTTAAG 1 cut(s) 407
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 1 cut(s) 60
AjuI GAANNNNNNNTTGG 4 cut(s) 134, 166, 191, 223
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
Alw21I GWGCWC 2 cut(s) 357, 402
Alw26I GTCTC 1 cut(s) 251
AoxI GGCC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 19, 36
AspS9I GGNCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 2 cut(s) 357, 402
BccI CCATC 3 cut(s) 140, 247, 313
BceAI ACGGC 2 cut(s) 131, 139
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 227
BfrI CTTAAG 1 cut(s) 407
BmcAI AGTACT 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 244
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 170, 307
BseGI GGATG 2 cut(s) 324, 337
BseLI CCNNNNNNNGG 2 cut(s) 147, 244
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 170, 307
Bsh1236I CGCG 2 cut(s) 17, 36
BshFI GGCC 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 357, 402
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 147, 244
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 357, 402
Bsp143I GATC 2 cut(s) 174, 295
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 173
BspFNI CGCG 2 cut(s) 17, 36
BspTI CTTAAG 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 2 cut(s) 170, 307
BssAI RCCGGY 1 cut(s) 129
BssMI GATC 2 cut(s) 174, 295
Bst6I CTCTTC 1 cut(s) 225
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 28, 32, 67
BstDEI CTNAG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 324, 337
BstFNI CGCG 2 cut(s) 17, 36
BstHHI GCGC 2 cut(s) 19, 36
BstKTI GATC 2 cut(s) 177, 298
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 174, 295
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 361
BstUI CGCG 2 cut(s) 17, 36
BstV2I GAAGAC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 324, 337
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 28, 32, 67
CfoI GCGC 2 cut(s) 19, 36
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 106, 358
CviJI RGCY 6 cut(s) 26, 65, 118, 126, 133, 400
CviKI_1 RGCY 6 cut(s) 26, 65, 118, 126, 133, 400
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 160
DpnI GATC 2 cut(s) 176, 297
DpnII GATC 2 cut(s) 174, 295
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 2 cut(s) 109, 361
FaiI YATR 4 cut(s) 107, 359, 375, 429
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 2 cut(s) 105, 357
FblI GTMKAC 1 cut(s) 213
FokI GGATG 2 cut(s) 331, 344
FriOI GRGCYC 1 cut(s) 402
FspBI CTAG 1 cut(s) 227
GlaI GCGC 2 cut(s) 18, 35
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 130
HhaI GCGC 2 cut(s) 19, 36
Hin1II CATG 2 cut(s) 109, 361
Hin6I GCGC 2 cut(s) 17, 34
HinP1I GCGC 2 cut(s) 17, 34
HinfI GANTC 2 cut(s) 166, 338
HpaII CCGG 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 163, 300
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 184, 193, 271
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 160
Hsp92II CATG 2 cut(s) 109, 361
HspAI GCGC 2 cut(s) 17, 34
Kzo9I GATC 2 cut(s) 174, 295
LpnPI CCDG 5 cut(s) 16, 40, 143, 183, 288
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 111
MalI GATC 2 cut(s) 176, 297
MboI GATC 2 cut(s) 174, 295
MboII GAAGA 3 cut(s) 208, 242, 378
MhlI GDGCHC 2 cut(s) 357, 402
MluCI AATT 2 cut(s) 286, 414
MnlI CCTC 2 cut(s) 3, 93
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 2 cut(s) 137, 408
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 1 cut(s) 130
MvnI CGCG 2 cut(s) 17, 36
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 2 cut(s) 174, 295
NlaIII CATG 2 cut(s) 109, 361
NmuCI GTSAC 1 cut(s) 111
NspI RCATGY 1 cut(s) 361
PciI ACATGT 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 166, 338
PscI ACATGT 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 132
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 137, 408
Sau3AI GATC 2 cut(s) 174, 295
Sau96I GGNCC 1 cut(s) 132
ScaI AGTACT 1 cut(s) 225
SduI GDGCHC 2 cut(s) 357, 402
SetI ASST 3 cut(s) 104, 282, 402
SmlI CTYRAG 2 cut(s) 407, 432
SmoI CTYRAG 2 cut(s) 407, 432
Sse9I AATT 2 cut(s) 286, 414
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 227
SstI GAGCTC 1 cut(s) 402
TaqI TCGA 1 cut(s) 351
TasI AATT 2 cut(s) 286, 414
TatI WGTACW 1 cut(s) 223
TfiI GAWTC 2 cut(s) 166, 338
Tru1I TTAA 2 cut(s) 137, 408
Tru9I TTAA 2 cut(s) 137, 408
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 278
TspRI CASTG 1 cut(s) 177
Vha464I CTTAAG 1 cut(s) 407
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.