Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013868

Physical Location & Seq

Genomic Coordinates Reverse (-)

15082855 .. 15084559

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGTCCGGAGGAATAATGGATGAAGAGATCGAGATTCCTCCGTTCTTCCTTTGTCCTATCTCTTTGGAGATCATGAAAGATCCAGTGATAGTCTCTACCGGAATAACCTACGACAGAGACAGCATCGAGAAATGGCTATTTGCAGGCAAGAAAAACTCGTGTCCGGTCACCAAACAAGACATAACCGACGCGGATCTCACCCCGAATCACACTCTACGCCGTCTCATCCAATCTTGGTGCACCCTAAACGCCTCCTACGGCGTCGAGAGGATCCCTACCCCAAGACCTCCGATTTGTAAATCTGAGATCGAAAAGCTCATTAGAGATTCAGCCTCTTCCCATGAAAACCAAGTCAAGTGTCTCAAACGACTTCGTCAGATTGTGTCGGAGAACGCGACCAACAAGCGGTGTTTAGAGGCAGCGGGAGTACCGGAGTTCTTGGCCAACATCGTAAGCAACGACTCAGAAAATGGGAGTTTGACCGACGAAGCCCTCAACTTACTTTACCACCTCGAGACCTCAGAGACAGTCCTCAAGAATCTTTTAAACAACAAGAAAGATAACAATATCGTAAAGTCGTTGACGAAGATCATGCAGCGTGGGATGTACGAGTCCAGAGTCTATGCCACTTTGCTTCTCAAGAACATTCTCGAAGTAGCGGATCCAATGCAGAGTATGACTCTCAAGCCAGAGGTTTTCACTGAGGTCGTCCAGATCTTGGACGACCGGATCTCGCAGAAGGCGACCAAAGCTGCCATGCATATATTGGTGAACATATGCCCATGGGGAAGGAACAGACACAAGGCCGTGGAAGCTGGAGTAATCTCTGTGATCATCGAGCTTCTCATGGACGAGAGCTTCACATCAGAGAGGAGAGGTCCAGAGATGGCGATGGTGGTTCTTGATCTGTTGTGTCAGTGTGCGGAGGGACGAGCCGAGTTCTTGAACCACGGAGCAGCCATAGCGGTGGTGTGCAAGAAGATACTTAGGGTTTCACAGACAGCAAGCGATAGAGCGGTTAGGGTTTTGTTGTCGGTGGGAAGGTTCTGCGCAACGCCTGCTTTGTTGCACGAGATGTTACAGTTGGGGGTTGTAGCGAAGCTTTGTCTTGTGCTTCAAGTAAGCTGTGGAGGTAAGACCAAAGAGAAGGCAAAGGAGTTGCTTAAGTTGCACGCTAGGGTCTGGAAGGACTCGCCTTGTCTCCCAAAAAACATGATTCTTGCATATCCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

411

Amino Acids

45.82

Weight (kDa)

8.28

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	12 - 81	3.3e-22	U-box domain
ARM_PUB	PF25598	102 - 410	3.3e-113	Plant U-box protein ARM repeat region
Rcd1	PF04078	115 - 260	6.2e-09	Cell differentiation family, Rcd1-like
ARM_ARMC5	PF24768	129 - 365	3.7e-06	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35930
fragaria_vesca	FvH4_6g20400
malus_domestica	MD12G1040900.v1.1 MD14G1040300.v1.1
prunus_persica	Prupe.7G094000_v2.0.a1
pyrus_communis	pycom12g03520 pycom14g03420
rosa_chinensis	RchiOBHm_Chr3g0476101
rosa_laevigata	RLG00000023790
rosa_multiflora	Rmu_sc0000114.1_g000029
rosa_roxburghii	Rroxscaffold_6G00405470
rosa_rugosa	Rorug03G0152800
rosa_samantha	Rh3AG203800 Rh3BG234100 Rh3CG229400 Rh3DG229300
rosa_wichuraiana	Rw3G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1051
AccB7I	CCANNNNNTGG	1 cut(s)	718
AccBSI	CCGCTC	1 cut(s)	1016
AccII	CGCG	2 cut(s)	191, 395
AccIII	TCCGGA	1 cut(s)	5
AciI	CCGC	7 cut(s)	191, 406, 422, 659, 923, 965, 1016
AclWI	GGATC	7 cut(s)	74, 201, 265, 278, 656, 669, 737
AcoI	YGGCCR	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	2 cut(s)	429, 608
AfiI	CCNNNNNNNGG	2 cut(s)	405, 718
AflII	CTTAAG	1 cut(s)	1163
AgsI	TTSAA	2 cut(s)	946, 1118
AluBI	AGCT	7 cut(s)	316, 752, 815, 841, 858, 1102, 1125
AluI	AGCT	7 cut(s)	316, 752, 815, 841, 858, 1102, 1125
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	7 cut(s)	97, 111, 227, 365, 509, 518, 1205
Alw44I	GTGCAC	1 cut(s)	238
AlwI	GGATC	7 cut(s)	74, 201, 265, 278, 656, 669, 737
Ama87I	CYCGRG	1 cut(s)	512
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	2 cut(s)	441, 804
ApaLI	GTGCAC	1 cut(s)	238
ApeKI	GCWGC	4 cut(s)	419, 595, 752, 956
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
AspLEI	GCGC	1 cut(s)	1052
AspS9I	GGNCC	1 cut(s)	878
AsuHPI	GGTGA	3 cut(s)	160, 190, 781
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	443
BamHI	GGATCC	2 cut(s)	270, 661
BauI	CACGAG	2 cut(s)	157, 1070
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	4 cut(s)	431, 607, 739, 968
BccI	CCATC	2 cut(s)	880, 886
BceAI	ACGGC	3 cut(s)	204, 274, 791
BcgI	CGANNNNNNTGC	2 cut(s)	574, 608
BclI	TGATCA	1 cut(s)	831
BcoDI	GTCTC	7 cut(s)	97, 111, 227, 365, 509, 518, 1205
BfaI	CTAG	1 cut(s)	1176
BfrI	CTTAAG	1 cut(s)	1163
BglII	AGATCT	1 cut(s)	714
BisI	GCNGC	4 cut(s)	420, 596, 753, 957
BlsI	GCNGC	4 cut(s)	421, 597, 754, 958
Bme18I	GGWCC	1 cut(s)	878
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	2 cut(s)	272, 663
BmsI	GCATC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
BpmI	CTGGAG	1 cut(s)	837
BpuEI	CTTGAG	3 cut(s)	518, 623, 668
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	782, 807, 949
BsaWI	WCCGGW	5 cut(s)	5, 98, 163, 430, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 718
Bse1I	ACTGG	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	5
BseDI	CCNNGG	3 cut(s)	782, 807, 949
BseGI	GGATG	3 cut(s)	25, 225, 609
BseLI	CCNNNNNNNGG	2 cut(s)	405, 718
BseMII	CTCAG	4 cut(s)	294, 477, 534, 693
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	886
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	4 cut(s)	431, 607, 739, 968
Bsh1236I	CGCG	2 cut(s)	191, 395
Bsh1285I	CGRYCG	1 cut(s)	727
BshFI	GGCC	2 cut(s)	443, 806
BsiEI	CGRYCG	1 cut(s)	727
BsiHKAI	GWGCWC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	5 cut(s)	6, 99, 164, 431, 727
BslFI	GGGAC	1 cut(s)	942
BslI	CCNNNNNNNGG	2 cut(s)	405, 718
BsmAI	GTCTC	7 cut(s)	97, 111, 227, 365, 509, 518, 1205
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	942
BsnI	GGCC	2 cut(s)	443, 806
Bso31I	GGTCTC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp13I	TCCGGA	1 cut(s)	5
Bsp19I	CCATGG	1 cut(s)	782
BspACI	CCGC	7 cut(s)	191, 406, 422, 659, 923, 965, 1016
BspANI	GGCC	2 cut(s)	443, 806
BspCNI	CTCAG	4 cut(s)	295, 476, 533, 694
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	191, 395
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	272, 663
BspPI	GGATC	7 cut(s)	74, 201, 265, 278, 656, 669, 737
BspTI	CTTAAG	1 cut(s)	1163
BspTNI	GGTCTC	1 cut(s)	509
BsrBI	CCGCTC	1 cut(s)	1016
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	782, 807, 949
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	2 cut(s)	157, 1070
BssT1I	CCWWGG	1 cut(s)	782
Bst2BI	CACGAG	2 cut(s)	157, 1070
Bst4CI	ACNGT	2 cut(s)	529, 1083
Bst6I	CTCTTC	2 cut(s)	18, 340
BstACI	GRCGYC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	1163
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstC8I	GCNNGC	4 cut(s)	145, 1006, 1059, 1173
BstDEI	CTNAG	5 cut(s)	303, 463, 520, 702, 986
BstDSI	CCRYGG	3 cut(s)	782, 807, 949
BstEII	GGTNACC	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	25, 225, 609
BstFNI	CGCG	2 cut(s)	191, 395
BstHHI	GCGC	1 cut(s)	1052
BstMAI	GTCTC	7 cut(s)	97, 111, 227, 365, 509, 518, 1205
BstMCI	CGRYCG	1 cut(s)	727
BstMWI	GCNNNNNNNGC	5 cut(s)	749, 812, 962, 1058, 1168
BstPI	GGTNACC	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	242
BstUI	CGCG	2 cut(s)	191, 395
BstV1I	GCAGC	4 cut(s)	431, 607, 739, 968
BstX2I	RGATCY	6 cut(s)	79, 193, 270, 661, 714, 729
BstXI	CCANNNNNNTGG	1 cut(s)	967
BstYI	RGATCY	6 cut(s)	79, 193, 270, 661, 714, 729
BsuRI	GGCC	2 cut(s)	443, 806
BtgI	CCRYGG	3 cut(s)	782, 807, 949
BtgZI	GCGATG	1 cut(s)	905
BtsCI	GGATG	3 cut(s)	25, 225, 609
BtsIMutI	CAGTG	3 cut(s)	90, 699, 923
Cac8I	GCNNGC	4 cut(s)	145, 1006, 1059, 1173
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	1 cut(s)	1052
Cfr13I	GGNCC	1 cut(s)	878
CseI	GACGC	2 cut(s)	197, 250
Csp6I	GTAC	2 cut(s)	428, 607
CviAII	CATG	7 cut(s)	73, 341, 592, 757, 783, 847, 1213
CviQI	GTAC	2 cut(s)	428, 607
DdeI	CTNAG	5 cut(s)	303, 463, 520, 702, 986
DraI	TTTAAA	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	18, 340
EarI	CTCTTC	2 cut(s)	18, 340
Eco130I	CCWWGG	1 cut(s)	782
Eco31I	GGTCTC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	878
Eco88I	CYCGRG	1 cut(s)	512
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	782
EcoT22I	ATGCAT	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	782
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	7 cut(s)	76, 344, 595, 760, 786, 850, 1216
FaqI	GGGAC	1 cut(s)	942
FatI	CATG	7 cut(s)	72, 340, 591, 756, 782, 846, 1212
FauI	CCCGC	1 cut(s)	415
FauNDI	CATATG	1 cut(s)	776
FbaI	TGATCA	1 cut(s)	831
Fnu4HI	GCNGC	4 cut(s)	420, 596, 753, 957
FokI	GGATG	3 cut(s)	32, 212, 616
Fsp4HI	GCNGC	4 cut(s)	420, 596, 753, 957
FspBI	CTAG	1 cut(s)	1176
FspI	TGCGCA	1 cut(s)	1051
GlaI	GCGC	1 cut(s)	1051
GluI	GCNGC	4 cut(s)	420, 596, 753, 957
GsuI	CTGGAG	1 cut(s)	837
HaeIII	GGCC	2 cut(s)	443, 806
HapII	CCGG	5 cut(s)	6, 99, 164, 431, 727
HgaI	GACGC	2 cut(s)	197, 250
HhaI	GCGC	1 cut(s)	1052
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	7 cut(s)	76, 344, 595, 760, 786, 850, 1216
Hin6I	GCGC	1 cut(s)	1050
HinP1I	GCGC	1 cut(s)	1050
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	1 cut(s)	1100
HpaII	CCGG	5 cut(s)	6, 99, 164, 431, 727
HphI	GGTGA	3 cut(s)	160, 190, 781
Hpy166II	GTNNAC	3 cut(s)	240, 582, 772
Hpy188I	TCNGA	7 cut(s)	291, 304, 378, 388, 466, 523, 868
Hpy8I	GTNNAC	3 cut(s)	240, 582, 772
Hpy99I	CGWCG	3 cut(s)	191, 266, 488
HpyAV	CCTTC	5 cut(s)	733, 783, 1035, 1141, 1180
HpyCH4III	ACNGT	2 cut(s)	529, 1083
HpyCH4V	TGCA	9 cut(s)	143, 240, 595, 670, 760, 975, 1069, 1171, 1223
HpyF10VI	GCNNNNNNNGC	5 cut(s)	749, 812, 962, 1058, 1168
HpyF3I	CTNAG	5 cut(s)	303, 463, 520, 702, 986
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	7 cut(s)	76, 344, 595, 760, 786, 850, 1216
HspAI	GCGC	1 cut(s)	1050
Kpn2I	TCCGGA	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	831
LmnI	GCTCC	1 cut(s)	953
Lsp1109I	GCAGC	4 cut(s)	431, 607, 739, 968
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	1176
MaeIII	GTNAC	2 cut(s)	166, 1077
MbiI	CCGCTC	1 cut(s)	1016
MboII	GAAGA	5 cut(s)	35, 37, 327, 598, 991
MflI	RGATCY	6 cut(s)	79, 193, 270, 661, 714, 729
MhlI	GDGCHC	1 cut(s)	242
MlsI	TGGCCA	1 cut(s)	443
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	5 cut(s)	455, 620, 627, 673, 1184
MmeI	TCCRAC	1 cut(s)	366
Mox20I	TGGCCA	1 cut(s)	443
Mph1103I	ATGCAT	1 cut(s)	762
MroI	TCCGGA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	545, 1164
MslI	CAYNNNNRTG	1 cut(s)	965
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	422
MspCI	CTTAAG	1 cut(s)	1163
MspI	CCGG	5 cut(s)	6, 99, 164, 431, 727
MvnI	CGCG	2 cut(s)	191, 395
MwoI	GCNNNNNNNGC	5 cut(s)	749, 812, 962, 1058, 1168
NcoI	CCATGG	1 cut(s)	782
NdeI	CATATG	1 cut(s)	776
NlaIII	CATG	7 cut(s)	76, 344, 595, 760, 786, 850, 1216
NlaIV	GGNNCC	2 cut(s)	272, 663
NmeAIII	GCCGAG	1 cut(s)	961
NmuCI	GTSAC	1 cut(s)	166
NsbI	TGCGCA	1 cut(s)	1051
NsiI	ATGCAT	1 cut(s)	762
PaeR7I	CTCGAG	1 cut(s)	512
PagI	TCATGA	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	3 cut(s)	392, 456, 740
PfeI	GAWTC	5 cut(s)	34, 205, 326, 538, 1216
PflFI	GACNNNGTC	1 cut(s)	372
PflMI	CCANNNNNTGG	1 cut(s)	718
PkrI	GCNGC	4 cut(s)	421, 597, 754, 958
PleI	GAGTC	5 cut(s)	455, 619, 626, 673, 1184
PpsI	GAGTC	5 cut(s)	455, 619, 626, 673, 1184
PspEI	GGTNACC	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	272, 663
PspPI	GGNCC	1 cut(s)	878
PsuI	RGATCY	6 cut(s)	79, 193, 270, 661, 714, 729
PsyI	GACNNNGTC	1 cut(s)	372
RsaI	GTAC	2 cut(s)	429, 608
RsaNI	GTAC	2 cut(s)	428, 607
RseI	CAYNNNNRTG	1 cut(s)	965
SaqAI	TTAA	2 cut(s)	545, 1164
SatI	GCNGC	4 cut(s)	420, 596, 753, 957
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	5 cut(s)	455, 620, 627, 673, 1184
SduI	GDGCHC	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	132
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	1 cut(s)	878
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	965
SmlI	CTYRAG	5 cut(s)	512, 533, 638, 683, 1163
SmoI	CTYRAG	5 cut(s)	512, 533, 638, 683, 1163
SsiI	CCGC	7 cut(s)	191, 406, 422, 659, 923, 965, 1016
SspMI	CTAG	1 cut(s)	1176
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	2 cut(s)	529, 1083
TaqI	TCGA	7 cut(s)	30, 126, 264, 309, 513, 651, 837
TaqII	GACCGA	1 cut(s)	497
TfiI	GAWTC	5 cut(s)	34, 205, 326, 538, 1216
Tru1I	TTAA	2 cut(s)	545, 1164
Tru9I	TTAA	2 cut(s)	545, 1164
TscAI	CASTG	3 cut(s)	90, 706, 923
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	4 cut(s)	419, 595, 752, 956
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	36, 89, 357
TspGWI	ACGGA	2 cut(s)	30, 966
TspRI	CASTG	3 cut(s)	90, 706, 923
Tth111I	GACNNNGTC	1 cut(s)	372
Van91I	CCANNNNNTGG	1 cut(s)	718
Vha464I	CTTAAG	1 cut(s)	1163
VneI	GTGCAC	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	763
XhoI	CTCGAG	1 cut(s)	512
XspI	CTAG	1 cut(s)	1176
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.