Prupe.7G094000_v2.0.a1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
12663842 .. 12665137
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G094000.1

Sequence Viewer

Length: 1218 bp
ATGGATCAAGAAATTGATGTTCCTTCATTTTTCATCTGCCCTATTTCTCTGGAAATCATGAAAGACCCCGTCACAATTACAACCGGGATAACCTACGACCGGGAGAGCATCGAGAAATGGCTATTCTTGAGCAAGAACAACACCTGCCCCGTCACCAAACAAGTGGTTTCGGACTCTGACATCACCCCAAACCACACTCTCCGCCGGCTGCTCCAAGCTTGGTGCACCCTGAACGCTTCTCACGGCATCGAGCGGATCCCTACTCCGAAGCCGCCTGTCAACAAAACCCAGATCGCCAAGCTCTTCAGAGAAGCCAAAAAGTCTCCACAGTGCCTGTCGAGATGCCTTGGAGAGATCCGGTCCATGGCGTCCCACAGTGAAGCCAACAAGAGAAGCATCAAAGCCGCCGGCGCAAGCGAGTTCTTGTCTTCCATGATCATCAACAACGTCAGAAACAACAACAATTTTGAAAGCGAAGAAGCTTTGAGCATCCTCTACAACCTCAATCTCAGCGAAGACGCACTCAAAACACTTGTAGGCAAAGAAGGGGAGTTTATCGACGCCTTGATCAAGCTCATGCAACGTGGAAGCTACGAGTCTCGAGCTTATGCAGTGATGTTATTCAGATCAATGTTCGAGGTGGCTGACGACCCAATGAAGATGACAAACTTAAGACCTGAATTCTTCATCGAAGTCGTTCAGGTCTTGAATGATCAGATCTCACAGCAGGCCTCAAAAGCCACATTGCAGCTGCTCATCAAGCTCTGCCCTTGGGGACGAAACCGAATCAAGGCCGTCGAAGCCGGGGCAGTTAATGTCTTGATCGAGCTTCTCCTTGATACATCTGCAGACAGGAGGACCTTGGAAATGACACTGATGGTTCTTGACATGATATGCGCGTGCGCAGAAGGCCGCGCAGACCTGCTGAACCACGGGGCAGGACTCGCGGTGATTTCGAAGAAGATAATGAGAGTTTCGAAGGTGGGGAGCGAGAGGGCTGTGAGGATTTTGTTCTCCATTTGCAAGTTCTCGGCGACCCCGAGTGTTTTGCAGGAGATGATGCAACTGGGTGTTGTAGCAAAGCTGTGCTTGGTGCTTCAAGTGGACAGTGGGAGCAAGACCAAGGAGAAGGCCAGAGAGATCTTGAAATTGCATGCAAGGACATGGAAGAACTCTACTTGTATACCAAGCAGTTTGGTTTCTTCTTATCCTTCATAG

Protein Analysis

406

Amino Acids

45.16

Weight (kDa)

8.87

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35930
fragaria_vesca FvH4_6g20400
malus_domestica MD12G1040900.v1.1 MD14G1040300.v1.1
prunus_persica Prupe.7G094000_v2.0.a1
pyrus_communis pycom12g03520 pycom14g03420
rosa_chinensis RchiOBHm_Chr3g0476101
rosa_laevigata RLG00000023790
rosa_multiflora Rmu_sc0000114.1_g000029
rosa_roxburghii Rroxscaffold_6G00405470
rosa_rugosa Rorug03G0152800
rosa_samantha Rh3AG203800 Rh3BG234100 Rh3CG229400 Rh3DG229300
rosa_wichuraiana Rw3G018520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc16I TGCGCA 1 cut(s) 904
Acc36I ACCTGC 2 cut(s) 152, 930
AccBSI CCGCTC 1 cut(s) 253
AccI GTMKAC 1 cut(s) 1183
AccII CGCG 3 cut(s) 899, 915, 947
AciI CCGC 6 cut(s) 202, 253, 272, 405, 913, 947
AclWI GGATC 4 cut(s) 12, 250, 263, 349
AcsI RAATTY 1 cut(s) 680
AcuI CTGAAG 1 cut(s) 289
AcyI GRCGYC 2 cut(s) 368, 561
AfiI CCNNNNNNNGG 3 cut(s) 99, 364, 790
AflII CTTAAG 1 cut(s) 670
AgsI TTSAA 4 cut(s) 470, 709, 1100, 1147
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 2 cut(s) 327, 603
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 4 cut(s) 12, 250, 263, 349
AlwNI CAGNNNCTG 1 cut(s) 334
Ama87I CYCGRG 2 cut(s) 600, 1039
AoxI GGCC 4 cut(s) 729, 792, 910, 1131
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 208, 748, 751
ApoI RAATTY 1 cut(s) 680
Asp700I GAANNNNTTC 1 cut(s) 696
AspLEI GCGC 4 cut(s) 413, 899, 905, 917
AspS9I GGNCC 2 cut(s) 360, 858
AsuC2I CCSGG 3 cut(s) 85, 101, 805
AsuHPI GGTGA 3 cut(s) 145, 175, 961
AsuII TTCGAA 2 cut(s) 956, 977
AvaI CYCGRG 2 cut(s) 600, 1039
AvaII GGWCC 2 cut(s) 360, 858
BaeGI GKGCMC 1 cut(s) 227
BamHI GGATCC 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 420, 522
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 3 cut(s) 195, 738, 760
BccI CCATC 1 cut(s) 871
BceAI ACGGC 2 cut(s) 259, 779
BcgI CGANNNNNNTGC 2 cut(s) 1030, 1064
BclI TGATCA 3 cut(s) 435, 567, 712
BcnI CCSGG 3 cut(s) 85, 101, 805
BcoDI GTCTC 2 cut(s) 327, 603
BfmI CTRYAG 1 cut(s) 846
BfrI CTTAAG 1 cut(s) 670
BfuAI ACCTGC 2 cut(s) 152, 930
BglII AGATCT 2 cut(s) 717, 1140
BisI GCNGC 6 cut(s) 209, 272, 405, 749, 752, 913
BlsI GCNGC 6 cut(s) 210, 273, 406, 750, 753, 914
Bme1390I CCNGG 3 cut(s) 85, 101, 805
Bme18I GGWCC 2 cut(s) 360, 858
BmeT110I CYCGRG 2 cut(s) 600, 1039
BmgT120I GGNCC 2 cut(s) 360, 858
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 3 cut(s) 85, 101, 805
BmrI ACTGGG 1 cut(s) 1076
BmsI GCATC 6 cut(s) 117, 255, 332, 405, 498, 1050
BmuI ACTGGG 1 cut(s) 1076
BpiI GAAGAC 2 cut(s) 420, 522
Bpu14I TTCGAA 2 cut(s) 956, 977
BpuEI CTTGAG 1 cut(s) 148
BpuMI CCSGG 3 cut(s) 85, 101, 805
BsaHI GRCGYC 2 cut(s) 368, 561
BsaJI CCNNGG 7 cut(s) 346, 363, 770, 804, 861, 931, 1122
BsaWI WCCGGW 1 cut(s) 357
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 364, 790
Bse118I RCCGGY 2 cut(s) 204, 407
Bse1I ACTGG 1 cut(s) 1071
Bse3DI GCAATG 1 cut(s) 743
BseDI CCNNGG 7 cut(s) 346, 363, 770, 804, 861, 931, 1122
BseGI GGATG 1 cut(s) 489
BseLI CCNNNNNNNGG 3 cut(s) 99, 364, 790
BseMI GCAATG 1 cut(s) 743
BseMII CTCAG 1 cut(s) 523
BseNI ACTGG 1 cut(s) 1071
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 3 cut(s) 195, 738, 760
Bsh1236I CGCG 3 cut(s) 899, 915, 947
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 4 cut(s) 731, 794, 912, 1133
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 2 cut(s) 600, 1039
BsiSI CCGG 6 cut(s) 84, 100, 205, 358, 408, 804
BslFI GGGAC 2 cut(s) 355, 789
BslI CCNNNNNNNGG 3 cut(s) 99, 364, 790
BsmAI GTCTC 2 cut(s) 327, 603
BsmFI GGGAC 2 cut(s) 355, 789
BsnI GGCC 4 cut(s) 731, 794, 912, 1133
BsoBI CYCGRG 2 cut(s) 600, 1039
Bsp119I TTCGAA 2 cut(s) 956, 977
Bsp1286I GDGCHC 1 cut(s) 227
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 6 cut(s) 202, 253, 272, 405, 913, 947
BspANI GGCC 4 cut(s) 731, 794, 912, 1133
BspCNI CTCAG 1 cut(s) 522
BspFNI CGCG 3 cut(s) 899, 915, 947
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 257
BspMAI CTGCAG 1 cut(s) 850
BspMI ACCTGC 2 cut(s) 152, 930
BspPI GGATC 4 cut(s) 12, 250, 263, 349
BspQI GCTCTTC 1 cut(s) 308
BspT104I TTCGAA 2 cut(s) 956, 977
BspTI CTTAAG 1 cut(s) 670
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 743
BsrFI RCCGGY 2 cut(s) 204, 407
BsrI ACTGG 1 cut(s) 1071
BssAI RCCGGY 2 cut(s) 204, 407
BssECI CCNNGG 7 cut(s) 346, 363, 770, 804, 861, 931, 1122
BssNAI GTATAC 1 cut(s) 1184
BssNI GRCGYC 2 cut(s) 368, 561
BssT1I CCWWGG 5 cut(s) 346, 363, 770, 861, 1122
Bst1107I GTATAC 1 cut(s) 1184
Bst4CI ACNGT 3 cut(s) 330, 377, 1109
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 2 cut(s) 368, 561
BstAFI CTTAAG 1 cut(s) 670
BstBI TTCGAA 2 cut(s) 956, 977
BstC8I GCNNGC 6 cut(s) 206, 409, 415, 729, 901, 1155
BstDEI CTNAG 1 cut(s) 509
BstDSI CCRYGG 2 cut(s) 363, 931
BstF5I GGATG 1 cut(s) 489
BstFNI CGCG 3 cut(s) 899, 915, 947
BstHHI GCGC 4 cut(s) 413, 899, 905, 917
BstMAI GTCTC 2 cut(s) 327, 603
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 6 cut(s) 410, 737, 760, 800, 909, 944
BstNSI RCATGY 1 cut(s) 1157
BstSCI CCNGG 3 cut(s) 83, 99, 803
BstSFI CTRYAG 1 cut(s) 846
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 3 cut(s) 899, 915, 947
BstV1I GCAGC 3 cut(s) 195, 738, 760
BstV2I GAAGAC 2 cut(s) 420, 522
BstX2I RGATCY 4 cut(s) 255, 354, 717, 1140
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 4 cut(s) 255, 354, 717, 1140
BstZ17I GTATAC 1 cut(s) 1184
BsuRI GGCC 4 cut(s) 731, 794, 912, 1133
BtgI CCRYGG 2 cut(s) 363, 931
BtsCI GGATG 1 cut(s) 489
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 5 cut(s) 335, 382, 618, 872, 1114
BveI ACCTGC 2 cut(s) 152, 930
Cac8I GCNNGC 6 cut(s) 206, 409, 415, 729, 901, 1155
CaiI CAGNNNCTG 1 cut(s) 334
CciI TCATGA 1 cut(s) 57
CfoI GCGC 4 cut(s) 413, 899, 905, 917
Cfr10I RCCGGY 2 cut(s) 204, 407
Cfr13I GGNCC 2 cut(s) 360, 858
CseI GACGC 3 cut(s) 357, 527, 569
CviAII CATG 7 cut(s) 58, 364, 433, 577, 889, 1154, 1164
DdeI CTNAG 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
EciI GGCGGA 1 cut(s) 191
Eco130I CCWWGG 5 cut(s) 346, 363, 770, 861, 1122
Eco147I AGGCCT 1 cut(s) 731
Eco47I GGWCC 2 cut(s) 360, 858
Eco57I CTGAAG 1 cut(s) 289
Eco88I CYCGRG 2 cut(s) 600, 1039
EcoO109I RGGNCCY 1 cut(s) 858
EcoRI GAATTC 1 cut(s) 680
EcoT14I CCWWGG 5 cut(s) 346, 363, 770, 861, 1122
ErhI CCWWGG 5 cut(s) 346, 363, 770, 861, 1122
FaeI CATG 7 cut(s) 61, 367, 436, 580, 892, 1157, 1167
FalI AAGNNNNNCTT 2 cut(s) 1073, 1105
FaqI GGGAC 2 cut(s) 355, 789
FatI CATG 7 cut(s) 57, 363, 432, 576, 888, 1153, 1163
FbaI TGATCA 3 cut(s) 435, 567, 712
FblI GTMKAC 1 cut(s) 1183
Fnu4HI GCNGC 6 cut(s) 209, 272, 405, 749, 752, 913
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 6 cut(s) 209, 272, 405, 749, 752, 913
FspI TGCGCA 1 cut(s) 904
GlaI GCGC 4 cut(s) 412, 898, 904, 916
GluI GCNGC 6 cut(s) 209, 272, 405, 749, 752, 913
HaeIII GGCC 4 cut(s) 731, 794, 912, 1133
HapII CCGG 6 cut(s) 84, 100, 205, 358, 408, 804
HgaI GACGC 3 cut(s) 357, 527, 569
HhaI GCGC 4 cut(s) 413, 899, 905, 917
Hin1I GRCGYC 2 cut(s) 368, 561
Hin1II CATG 7 cut(s) 61, 367, 436, 580, 892, 1157, 1167
Hin6I GCGC 4 cut(s) 411, 897, 903, 915
HinP1I GCGC 4 cut(s) 411, 897, 903, 915
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 2 cut(s) 216, 480
HinfI GANTC 4 cut(s) 173, 596, 786, 942
HpaII CCGG 6 cut(s) 84, 100, 205, 358, 408, 804
HphI GGTGA 3 cut(s) 145, 175, 961
Hpy166II GTNNAC 4 cut(s) 225, 280, 1105, 1184
Hpy188I TCNGA 7 cut(s) 172, 178, 267, 308, 452, 626, 717
Hpy8I GTNNAC 4 cut(s) 225, 280, 1105, 1184
Hpy99I CGWCG 2 cut(s) 563, 800
HpyAV CCTTC 5 cut(s) 33, 539, 902, 973, 1123
HpyCH4III ACNGT 3 cut(s) 330, 377, 1109
HpyCH4IV ACGT 2 cut(s) 447, 583
HpyF10VI GCNNNNNNNGC 6 cut(s) 410, 737, 760, 800, 909, 944
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 2 cut(s) 447, 583
Hsp92I GRCGYC 2 cut(s) 368, 561
Hsp92II CATG 7 cut(s) 61, 367, 436, 580, 892, 1157, 1167
HspAI GCGC 4 cut(s) 411, 897, 903, 915
KroI GCCGGC 2 cut(s) 204, 407
KroNI GCCGGC 2 cut(s) 206, 409
Ksp22I TGATCA 3 cut(s) 435, 567, 712
LguI GCTCTTC 1 cut(s) 308
LmnI GCTCC 3 cut(s) 216, 987, 1113
Lsp1109I GCAGC 3 cut(s) 195, 738, 760
LweI GCATC 6 cut(s) 117, 255, 332, 405, 498, 1050
MaeII ACGT 2 cut(s) 447, 583
MaeIII GTNAC 2 cut(s) 70, 151
MbiI CCGCTC 1 cut(s) 253
MflI RGATCY 4 cut(s) 255, 354, 717, 1140
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 5 cut(s) 12, 75, 463, 680, 1148
MlyI GAGTC 3 cut(s) 167, 605, 936
MnlI CCTC 7 cut(s) 503, 512, 631, 742, 849, 987, 996
MreI CGCCGGCG 1 cut(s) 407
MroNI GCCGGC 2 cut(s) 204, 407
MroXI GAANNNNTTC 1 cut(s) 696
MseI TTAA 2 cut(s) 671, 813
MspA1I CMGCKG 1 cut(s) 751
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 6 cut(s) 84, 100, 205, 358, 408, 804
MspR9I CCNGG 3 cut(s) 85, 101, 805
MvnI CGCG 3 cut(s) 899, 915, 947
MwoI GCNNNNNNNGC 6 cut(s) 410, 737, 760, 800, 909, 944
NaeI GCCGGC 2 cut(s) 206, 409
NciI CCSGG 3 cut(s) 85, 101, 805
NcoI CCATGG 1 cut(s) 363
NgoMIV GCCGGC 2 cut(s) 204, 407
NlaIII CATG 7 cut(s) 61, 367, 436, 580, 892, 1157, 1167
NlaIV GGNNCC 1 cut(s) 257
NmeAIII GCCGAG 1 cut(s) 1010
NmuCI GTSAC 2 cut(s) 70, 151
NsbI TGCGCA 1 cut(s) 904
NspI RCATGY 1 cut(s) 1157
NspV TTCGAA 2 cut(s) 956, 977
PaeI GCATGC 1 cut(s) 1157
PaeR7I CTCGAG 1 cut(s) 600
PagI TCATGA 1 cut(s) 57
PaqCI CACCTGC 1 cut(s) 152
PceI AGGCCT 1 cut(s) 731
PciSI GCTCTTC 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 1037
PdiI GCCGGC 2 cut(s) 206, 409
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 1 cut(s) 786
PflFI GACNNNGTC 1 cut(s) 68
PkrI GCNGC 6 cut(s) 210, 273, 406, 750, 753, 914
PleI GAGTC 3 cut(s) 167, 604, 936
PpsI GAGTC 3 cut(s) 167, 604, 936
PpuMI RGGWCCY 1 cut(s) 858
Psp5II RGGWCCY 1 cut(s) 858
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 360, 858
PspPPI RGGWCCY 1 cut(s) 858
PstI CTGCAG 1 cut(s) 850
PstNI CAGNNNCTG 1 cut(s) 334
PsuI RGATCY 4 cut(s) 255, 354, 717, 1140
PsyI GACNNNGTC 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 751
SapI GCTCTTC 1 cut(s) 308
SaqAI TTAA 2 cut(s) 671, 813
SatI GCNGC 6 cut(s) 209, 272, 405, 749, 752, 913
Sau96I GGNCC 2 cut(s) 360, 858
SchI GAGTC 3 cut(s) 167, 605, 936
ScrFI CCNGG 3 cut(s) 85, 101, 805
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 6 cut(s) 117, 255, 332, 405, 498, 1050
SfcI CTRYAG 1 cut(s) 846
Sfr274I CTCGAG 1 cut(s) 600
SfuI TTCGAA 2 cut(s) 956, 977
SgrAI CRCCGGYG 1 cut(s) 407
SinI GGWCC 2 cut(s) 360, 858
SlaI CTCGAG 1 cut(s) 600
SmlI CTYRAG 3 cut(s) 127, 600, 670
SmoI CTYRAG 3 cut(s) 127, 600, 670
SphI GCATGC 1 cut(s) 1157
Sse9I AATT 5 cut(s) 12, 75, 463, 680, 1148
SseBI AGGCCT 1 cut(s) 731
SsiI CCGC 6 cut(s) 202, 253, 272, 405, 913, 947
StuI AGGCCT 1 cut(s) 731
StyD4I CCNGG 3 cut(s) 83, 99, 803
StyI CCWWGG 5 cut(s) 346, 363, 770, 861, 1122
TaaI ACNGT 3 cut(s) 330, 377, 1109
TaiI ACGT 2 cut(s) 450, 586
TasI AATT 5 cut(s) 12, 75, 463, 680, 1148
TauI GCSGC 3 cut(s) 274, 407, 915
TfiI GAWTC 1 cut(s) 786
Tru1I TTAA 2 cut(s) 671, 813
Tru9I TTAA 2 cut(s) 671, 813
TscAI CASTG 5 cut(s) 335, 382, 618, 879, 1114
TseFI GTSAC 2 cut(s) 70, 151
TseI GCWGC 3 cut(s) 208, 748, 751
Tsp45I GTSAC 2 cut(s) 70, 151
TspDTI ATGAA 6 cut(s) 15, 22, 74, 671, 676, 1203
TspRI CASTG 5 cut(s) 335, 382, 618, 879, 1114
Tth111I GACNNNGTC 1 cut(s) 68
Vha464I CTTAAG 1 cut(s) 670
VneI GTGCAC 1 cut(s) 223
VpaK11BI GGWCC 2 cut(s) 360, 858
XapI RAATTY 1 cut(s) 680
XceI RCATGY 1 cut(s) 1157
XhoI CTCGAG 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 1183
XmnI GAANNNNTTC 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.