Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013868

Physical Location & Seq

Genomic Coordinates Forward (+)

3424459 .. 3425448

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCGAAGCCGCCCGTTAACAAATCTCAGATCGACAAGCTCCTCCGAGACGCCAAAAAGTCCCCAAACGGTCTGGCAAAATGCCTCAGTGAGCTTCGATCCATTTCATCCCAAAGCGAAGCCAACAAGAGAAGCATCGAAGCCGCTGGTGCAGGCGAGTTCCTTGCTTCAACGATAATCAACAACATCAAGAACGACAGAGAAAACGTCGAAAATGAAGAAGCTTTGAGCATCCTCTACAACCTAAATCTTAGTGAAGATGTTCTCAAAACCCTAATAGGCAAAGAGGGTGAGTTTGTCGAGGCCTTAATCAAACTCATGCAACGTGGGAGCGACGAGTCTCGGACGTACGCTGTGATGTTGTTGAGATCAATGTTCGAGGTTGCTGATTCGATGAGGATGACAAACGTAAAACCTGGATTCTTCGTCCAAGTTGTTCGGGTCTTAAATGATCAAATCTCACAACAGGCCTCAAAAGCCACATTGCAACTGTTGATCCAGCTCTGTCCATGGGGACGAAACAGAATCAAAGCCGTTGAATCCGGGGCGGTTATGGTCTTGATTGAGCTTCTTCTAGATACTTCTTCCGATAGGAGAACCTTGGAAATGACACTCTTGGTGCTTGACATGCTATGCGGCTGCGCGGAAGGCCGCGCAGAACTGCTGACCCACGGGGCAGGACTAGCCGTGGTGTCTAAGAAGATAATGAGGGTCTCGAAGGTGGCAAGCGAGAGGGCAGTGAAGATTTTGTTCTTCATTTGCAAGTTTTCCGCGACGTCGAATGTTTTGCAGGAGATGATGCAATTGGGTATTGTGGCGAAGCTATGCTTAGTTCTTCAGGTGGATAGTGGGAGCAAGACCAAGGAGAAGGCTAGAGAGATCTTAAAATTGCATGCAAGGACATGGAAGAATTCTACTTGTATACCAAGCAATTTGGTTTCTTCTTATCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

330

Amino Acids

36.31

Weight (kDa)

9.19

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	21 - 327	4.6e-85	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35930
fragaria_vesca	FvH4_6g20400
malus_domestica	MD12G1040900.v1.1 MD14G1040300.v1.1
prunus_persica	Prupe.7G094000_v2.0.a1
pyrus_communis	pycom12g03520 pycom14g03420
rosa_chinensis	RchiOBHm_Chr3g0476101
rosa_laevigata	RLG00000023790
rosa_multiflora	Rmu_sc0000114.1_g000029
rosa_roxburghii	Rroxscaffold_6G00405470
rosa_rugosa	Rorug03G0152800
rosa_samantha	Rh3AG203800 Rh3BG234100 Rh3CG229400 Rh3DG229300
rosa_wichuraiana	Rw3G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	812
AccI	GTMKAC	1 cut(s)	955
AccII	CGCG	3 cut(s)	677, 687, 806
AciI	CCGC	7 cut(s)	44, 177, 581, 669, 677, 685, 804
AclWI	GGATC	4 cut(s)	22, 35, 126, 523
AcsI	RAATTY	1 cut(s)	943
AcuI	CTGAAG	1 cut(s)	854
AcyI	GRCGYC	2 cut(s)	84, 809
AfaI	GTAC	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	204, 572
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	6 cut(s)	73, 127, 257, 535, 601, 856
AluI	AGCT	6 cut(s)	73, 127, 257, 535, 601, 856
Alw26I	GTCTC	3 cut(s)	75, 378, 751
AlwI	GGATC	4 cut(s)	22, 35, 126, 523
AoxI	GGCC	3 cut(s)	336, 501, 682
ApeKI	GCWGC	1 cut(s)	672
ApoI	RAATTY	1 cut(s)	943
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	677, 689
AsuC2I	CCSGG	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	659
BceAI	ACGGC	3 cut(s)	31, 551, 704
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 802, 836
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	577
BcoDI	GTCTC	3 cut(s)	75, 378, 751
BfaI	CTAG	3 cut(s)	608, 716, 906
BglII	AGATCT	1 cut(s)	912
BisI	GCNGC	5 cut(s)	44, 177, 670, 673, 685
BlsI	GCNGC	5 cut(s)	45, 178, 671, 674, 686
Bme1390I	CCNGG	2 cut(s)	450, 577
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	450, 577
BmsI	GCATC	4 cut(s)	27, 177, 273, 822
BpuMI	CCSGG	1 cut(s)	577
BsaHI	GRCGYC	2 cut(s)	84, 809
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	6 cut(s)	542, 576, 633, 703, 720, 894
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	6 cut(s)	542, 576, 633, 703, 720, 894
BseGI	GGATG	3 cut(s)	140, 264, 438
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	74, 133
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	659
BsgI	GTGCAG	1 cut(s)	204
Bsh1236I	CGCG	3 cut(s)	677, 687, 806
BshFI	GGCC	3 cut(s)	338, 503, 684
BsiSI	CCGG	1 cut(s)	576
BsiWI	CGTACG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	79, 561
BsmAI	GTCTC	3 cut(s)	75, 378, 751
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	79, 561
BsnI	GGCC	3 cut(s)	338, 503, 684
Bso31I	GGTCTC	1 cut(s)	751
Bsp143I	GATC	7 cut(s)	27, 63, 131, 401, 484, 528, 912
Bsp19I	CCATGG	1 cut(s)	542
BspACI	CCGC	7 cut(s)	44, 177, 581, 669, 677, 685, 804
BspANI	GGCC	3 cut(s)	338, 503, 684
BspCNI	CTCAG	2 cut(s)	73, 132
BspFNI	CGCG	3 cut(s)	677, 687, 806
BspLI	GGNNCC	1 cut(s)	29
BspPI	GGATC	4 cut(s)	22, 35, 126, 523
BspTNI	GGTCTC	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	515
BssECI	CCNNGG	6 cut(s)	542, 576, 633, 703, 720, 894
BssMI	GATC	7 cut(s)	27, 63, 131, 401, 484, 528, 912
BssNAI	GTATAC	1 cut(s)	956
BssNI	GRCGYC	2 cut(s)	84, 809
BssT1I	CCWWGG	3 cut(s)	542, 633, 894
Bst1107I	GTATAC	1 cut(s)	956
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	104, 525
BstACI	GRCGYC	2 cut(s)	84, 809
BstC8I	GCNNGC	3 cut(s)	187, 760, 927
BstDEI	CTNAG	5 cut(s)	60, 119, 284, 729, 862
BstDSI	CCRYGG	3 cut(s)	542, 703, 720
BstF5I	GGATG	3 cut(s)	140, 264, 438
BstFNI	CGCG	3 cut(s)	677, 687, 806
BstHHI	GCGC	2 cut(s)	677, 689
BstKTI	GATC	7 cut(s)	30, 66, 134, 404, 487, 531, 915
BstMAI	GTCTC	3 cut(s)	75, 378, 751
BstMBI	GATC	7 cut(s)	27, 63, 131, 401, 484, 528, 912
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 509, 661, 681, 716
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	2 cut(s)	664, 929
BstSCI	CCNGG	2 cut(s)	448, 575
BstUI	CGCG	3 cut(s)	677, 687, 806
BstV1I	GCAGC	1 cut(s)	659
BstX2I	RGATCY	2 cut(s)	27, 912
BstYI	RGATCY	2 cut(s)	27, 912
BstZ17I	GTATAC	1 cut(s)	956
BsuRI	GGCC	3 cut(s)	338, 503, 684
BtgI	CCRYGG	3 cut(s)	542, 703, 720
BtsCI	GGATG	3 cut(s)	140, 264, 438
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	2 cut(s)	127, 777
Cac8I	GCNNGC	3 cut(s)	187, 760, 927
CfoI	GCGC	2 cut(s)	677, 689
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	5 cut(s)	352, 543, 661, 926, 936
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	5 cut(s)	60, 119, 284, 729, 862
DpnI	GATC	7 cut(s)	29, 65, 133, 403, 486, 530, 914
DpnII	GATC	7 cut(s)	27, 63, 131, 401, 484, 528, 912
Eco130I	CCWWGG	3 cut(s)	542, 633, 894
Eco147I	AGGCCT	2 cut(s)	338, 503
Eco31I	GGTCTC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	854
EcoRI	GAATTC	1 cut(s)	943
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	3 cut(s)	542, 633, 894
ErhI	CCWWGG	3 cut(s)	542, 633, 894
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	5 cut(s)	355, 546, 664, 929, 939
FaiI	YATR	9 cut(s)	353, 544, 587, 662, 667, 859, 927, 937, 956
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FaqI	GGGAC	2 cut(s)	79, 561
FatI	CATG	5 cut(s)	351, 542, 660, 925, 935
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	955
Fnu4HI	GCNGC	5 cut(s)	44, 177, 670, 673, 685
FokI	GGATG	3 cut(s)	127, 251, 445
Fsp4HI	GCNGC	5 cut(s)	44, 177, 670, 673, 685
FspBI	CTAG	3 cut(s)	608, 716, 906
GlaI	GCGC	2 cut(s)	676, 688
GluI	GCNGC	5 cut(s)	44, 177, 670, 673, 685
HaeIII	GGCC	3 cut(s)	338, 503, 684
HapII	CCGG	1 cut(s)	576
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	2 cut(s)	677, 689
Hin1I	GRCGYC	2 cut(s)	84, 809
Hin1II	CATG	5 cut(s)	355, 546, 664, 929, 939
Hin6I	GCGC	2 cut(s)	675, 687
HinP1I	GCGC	2 cut(s)	675, 687
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	5 cut(s)	371, 422, 453, 558, 572
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	52, 956
Hpy188I	TCNGA	5 cut(s)	39, 63, 80, 378, 622
Hpy188III	TCNNGA	5 cut(s)	223, 592, 608, 748, 987
Hpy8I	GTNNAC	2 cut(s)	52, 956
Hpy99I	CGWCG	4 cut(s)	245, 371, 811, 814
HpyAV	CCTTC	3 cut(s)	674, 745, 895
HpyCH4III	ACNGT	2 cut(s)	104, 525
HpyCH4IV	ACGT	5 cut(s)	240, 358, 380, 441, 809
HpyCH4V	TGCA	8 cut(s)	185, 355, 520, 795, 823, 835, 925, 929
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 509, 661, 681, 716
HpyF3I	CTNAG	5 cut(s)	60, 119, 284, 729, 862
HpySE526I	ACGT	5 cut(s)	240, 358, 380, 441, 809
Hsp92I	GRCGYC	2 cut(s)	84, 809
Hsp92II	CATG	5 cut(s)	355, 546, 664, 929, 939
HspAI	GCGC	2 cut(s)	675, 687
Ksp22I	TGATCA	1 cut(s)	484
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	7 cut(s)	27, 63, 131, 401, 484, 528, 912
LmnI	GCTCC	3 cut(s)	78, 363, 885
Lsp1109I	GCAGC	1 cut(s)	659
LweI	GCATC	4 cut(s)	27, 177, 273, 822
MaeI	CTAG	3 cut(s)	608, 716, 906
MaeII	ACGT	5 cut(s)	240, 358, 380, 441, 809
MalI	GATC	7 cut(s)	29, 65, 133, 403, 486, 530, 914
MboI	GATC	7 cut(s)	27, 63, 131, 401, 484, 528, 912
MfeI	CAATTG	1 cut(s)	836
MflI	RGATCY	2 cut(s)	27, 912
MluCI	AATT	4 cut(s)	836, 920, 943, 964
MlyI	GAGTC	1 cut(s)	380
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	4 cut(s)	51, 341, 479, 917
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	2 cut(s)	450, 577
MunI	CAATTG	1 cut(s)	836
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	3 cut(s)	677, 687, 806
MwoI	GCNNNNNNNGC	5 cut(s)	182, 509, 661, 681, 716
NciI	CCSGG	1 cut(s)	577
NcoI	CCATGG	1 cut(s)	542
NdeII	GATC	7 cut(s)	27, 63, 131, 401, 484, 528, 912
NlaIII	CATG	5 cut(s)	355, 546, 664, 929, 939
NlaIV	GGNNCC	1 cut(s)	29
NspI	RCATGY	2 cut(s)	664, 929
PaeI	GCATGC	1 cut(s)	929
PceI	AGGCCT	2 cut(s)	338, 503
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	4 cut(s)	422, 453, 558, 572
Pfl23II	CGTACG	1 cut(s)	381
PkrI	GCNGC	5 cut(s)	45, 178, 671, 674, 686
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspLI	CGTACG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	27, 912
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	4 cut(s)	51, 341, 479, 917
SatI	GCNGC	5 cut(s)	44, 177, 670, 673, 685
Sau3AI	GATC	7 cut(s)	27, 63, 131, 401, 484, 528, 912
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	450, 577
SfaNI	GCATC	4 cut(s)	27, 177, 273, 822
SphI	GCATGC	1 cut(s)	929
Sse9I	AATT	4 cut(s)	836, 920, 943, 964
SseBI	AGGCCT	2 cut(s)	338, 503
SsiI	CCGC	7 cut(s)	44, 177, 581, 669, 677, 685, 804
SspMI	CTAG	3 cut(s)	608, 716, 906
StuI	AGGCCT	2 cut(s)	338, 503
StyD4I	CCNGG	2 cut(s)	448, 575
StyI	CCWWGG	3 cut(s)	542, 633, 894
TaaI	ACNGT	2 cut(s)	104, 525
TaiI	ACGT	5 cut(s)	243, 361, 383, 444, 812
TasI	AATT	4 cut(s)	836, 920, 943, 964
TauI	GCSGC	4 cut(s)	46, 179, 672, 687
TfiI	GAWTC	4 cut(s)	422, 453, 558, 572
Tru1I	TTAA	4 cut(s)	51, 341, 479, 917
Tru9I	TTAA	4 cut(s)	51, 341, 479, 917
TscAI	CASTG	2 cut(s)	127, 777
TseI	GCWGC	1 cut(s)	672
TspDTI	ATGAA	4 cut(s)	17, 129, 264, 778
TspRI	CASTG	2 cut(s)	127, 777
XapI	RAATTY	1 cut(s)	943
XbaI	TCTAGA	1 cut(s)	607
XceI	RCATGY	2 cut(s)	664, 929
XmiI	GTMKAC	1 cut(s)	955
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	3 cut(s)	608, 716, 906
ZraI	GACGTC	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.