RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G35930 |
| fragaria_vesca | FvH4_6g20400 |
| malus_domestica | MD12G1040900.v1.1 MD14G1040300.v1.1 |
| prunus_persica | Prupe.7G094000_v2.0.a1 |
| pyrus_communis | pycom12g03520 pycom14g03420 |
| rosa_chinensis | RchiOBHm_Chr3g0476101 |
| rosa_laevigata | RLG00000023790 |
| rosa_multiflora | Rmu_sc0000114.1_g000029 |
| rosa_roxburghii | Rroxscaffold_6G00405470 |
| rosa_rugosa | Rorug03G0152800 |
| rosa_samantha | Rh3AG203800 Rh3BG234100 Rh3CG229400 Rh3DG229300 |
| rosa_wichuraiana | Rw3G018520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 149 |
| Acc36I | ACCTGC | 2 cut(s) | 149, 448 |
| AccI | GTMKAC | 1 cut(s) | 1165 |
| AccII | CGCG | 1 cut(s) | 410 |
| AciI | CCGC | 6 cut(s) | 202, 346, 410, 504, 895, 980 |
| AclWI | GGATC | 5 cut(s) | 247, 260, 351, 384, 962 |
| AcoI | YGGCCR | 1 cut(s) | 885 |
| AcyI | GRCGYC | 1 cut(s) | 243 |
| AfaI | GTAC | 1 cut(s) | 432 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 96, 772, 894 |
| AgsI | TTSAA | 5 cut(s) | 491, 623, 691, 1082, 1129 |
| AjnI | CCWGG | 1 cut(s) | 314 |
| Alw21I | GWGCWC | 6 cut(s) | 224, 540, 813, 867, 906, 1157 |
| Alw26I | GTCTC | 2 cut(s) | 499, 649 |
| Alw44I | GTGCAC | 1 cut(s) | 220 |
| AlwI | GGATC | 5 cut(s) | 247, 260, 351, 384, 962 |
| AoxI | GGCC | 5 cut(s) | 378, 711, 774, 885, 897 |
| ApaLI | GTGCAC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 2 cut(s) | 311, 1045 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 678 |
| AspLEI | GCGC | 1 cut(s) | 410 |
| AspS9I | GGNCC | 1 cut(s) | 897 |
| AsuC2I | CCSGG | 1 cut(s) | 65 |
| AsuHPI | GGTGA | 3 cut(s) | 79, 819, 994 |
| AsuII | TTCGAA | 1 cut(s) | 938 |
| BaeGI | GKGCMC | 1 cut(s) | 224 |
| BamHI | GGATCC | 1 cut(s) | 252 |
| BanII | GRGCYC | 4 cut(s) | 540, 813, 906, 1157 |
| BauI | CACGAG | 1 cut(s) | 845 |
| BbsI | GAAGAC | 1 cut(s) | 509 |
| Bbv12I | GWGCWC | 6 cut(s) | 224, 540, 813, 867, 906, 1157 |
| BbvI | GCAGC | 2 cut(s) | 323, 1057 |
| BccI | CCATC | 4 cut(s) | 28, 368, 844, 853 |
| BceAI | ACGGC | 4 cut(s) | 256, 581, 761, 776 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 300, 334, 918, 952 |
| BciT130I | CCWGG | 1 cut(s) | 316 |
| BclI | TGATCA | 2 cut(s) | 645, 738 |
| BcnI | CCSGG | 1 cut(s) | 65 |
| BcoDI | GTCTC | 2 cut(s) | 499, 649 |
| BfaI | CTAG | 2 cut(s) | 521, 1118 |
| BfuAI | ACCTGC | 2 cut(s) | 149, 448 |
| BglII | AGATCT | 1 cut(s) | 1122 |
| BisI | GCNGC | 2 cut(s) | 312, 1046 |
| BlsI | GCNGC | 2 cut(s) | 313, 1047 |
| Bme1390I | CCNGG | 2 cut(s) | 65, 316 |
| BmgT120I | GGNCC | 1 cut(s) | 897 |
| BmiI | GGNNCC | 2 cut(s) | 254, 790 |
| BmrFI | CCNGG | 2 cut(s) | 65, 316 |
| BmsI | GCATC | 3 cut(s) | 114, 594, 811 |
| BpiI | GAAGAC | 1 cut(s) | 509 |
| BpmI | CTGGAG | 2 cut(s) | 109, 494 |
| Bpu14I | TTCGAA | 1 cut(s) | 938 |
| BpuEI | CTTGAG | 2 cut(s) | 673, 893 |
| BpuMI | CCSGG | 1 cut(s) | 65 |
| Bsa29I | ATCGAT | 1 cut(s) | 614 |
| BsaHI | GRCGYC | 1 cut(s) | 243 |
| BsaI | GGTCTC | 1 cut(s) | 649 |
| BsaJI | CCNNGG | 5 cut(s) | 393, 752, 777, 888, 1104 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 96, 772, 894 |
| Bse3DI | GCAATG | 2 cut(s) | 725, 861 |
| BseBI | CCWGG | 1 cut(s) | 316 |
| BseCI | ATCGAT | 1 cut(s) | 614 |
| BseDI | CCNNGG | 5 cut(s) | 393, 752, 777, 888, 1104 |
| BseGI | GGATG | 2 cut(s) | 561, 826 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 96, 772, 894 |
| BseMI | GCAATG | 2 cut(s) | 725, 861 |
| BseMII | CTCAG | 3 cut(s) | 461, 599, 651 |
| BseRI | GAGGAG | 1 cut(s) | 896 |
| BseSI | GKGCMC | 1 cut(s) | 224 |
| BseX3I | CGGCCG | 1 cut(s) | 885 |
| BseXI | GCAGC | 2 cut(s) | 323, 1057 |
| BseYI | CCCAGC | 1 cut(s) | 1048 |
| Bsh1236I | CGCG | 1 cut(s) | 410 |
| Bsh1285I | CGRYCG | 1 cut(s) | 888 |
| BshFI | GGCC | 5 cut(s) | 380, 713, 776, 887, 899 |
| BshVI | ATCGAT | 1 cut(s) | 614 |
| BsiEI | CGRYCG | 1 cut(s) | 888 |
| BsiHKAI | GWGCWC | 6 cut(s) | 224, 540, 813, 867, 906, 1157 |
| BsiSI | CCGG | 3 cut(s) | 65, 199, 786 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 96, 772, 894 |
| BsmAI | GTCTC | 2 cut(s) | 499, 649 |
| BsnI | GGCC | 5 cut(s) | 380, 713, 776, 887, 899 |
| Bso31I | GGTCTC | 1 cut(s) | 649 |
| Bsp119I | TTCGAA | 1 cut(s) | 938 |
| Bsp1286I | GDGCHC | 6 cut(s) | 224, 540, 813, 867, 906, 1157 |
| Bsp19I | CCATGG | 1 cut(s) | 393 |
| BspACI | CCGC | 6 cut(s) | 202, 346, 410, 504, 895, 980 |
| BspANI | GGCC | 5 cut(s) | 380, 713, 776, 887, 899 |
| BspCNI | CTCAG | 3 cut(s) | 462, 600, 652 |
| BspDI | ATCGAT | 1 cut(s) | 614 |
| BspFNI | CGCG | 1 cut(s) | 410 |
| BspHI | TCATGA | 1 cut(s) | 54 |
| BspLI | GGNNCC | 2 cut(s) | 254, 790 |
| BspMI | ACCTGC | 2 cut(s) | 149, 448 |
| BspPI | GGATC | 5 cut(s) | 247, 260, 351, 384, 962 |
| BspQI | GCTCTTC | 1 cut(s) | 1145 |
| BspT104I | TTCGAA | 1 cut(s) | 938 |
| BspTNI | GGTCTC | 1 cut(s) | 649 |
| BsrDI | GCAATG | 2 cut(s) | 725, 861 |
| BssECI | CCNNGG | 5 cut(s) | 393, 752, 777, 888, 1104 |
| BssNAI | GTATAC | 1 cut(s) | 1166 |
| BssNI | GRCGYC | 1 cut(s) | 243 |
| BssSI | CACGAG | 1 cut(s) | 845 |
| BssT1I | CCWWGG | 3 cut(s) | 393, 752, 1104 |
| Bst1107I | GTATAC | 1 cut(s) | 1166 |
| Bst2BI | CACGAG | 1 cut(s) | 845 |
| Bst2UI | CCWGG | 1 cut(s) | 316 |
| Bst4CI | ACNGT | 3 cut(s) | 327, 735, 1091 |
| Bst6I | CTCTTC | 1 cut(s) | 1145 |
| BstACI | GRCGYC | 1 cut(s) | 243 |
| BstBI | TTCGAA | 1 cut(s) | 938 |
| BstC8I | GCNNGC | 6 cut(s) | 350, 536, 711, 897, 970, 1137 |
| BstDEI | CTNAG | 4 cut(s) | 353, 470, 608, 660 |
| BstDSI | CCRYGG | 2 cut(s) | 393, 777 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 94 |
| BstF5I | GGATG | 2 cut(s) | 561, 826 |
| BstFNI | CGCG | 1 cut(s) | 410 |
| BstHHI | GCGC | 1 cut(s) | 410 |
| BstMAI | GTCTC | 2 cut(s) | 499, 649 |
| BstMCI | CGRYCG | 1 cut(s) | 888 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 531, 719, 782, 901, 910, 926 |
| BstNI | CCWGG | 1 cut(s) | 316 |
| BstNSI | RCATGY | 1 cut(s) | 1139 |
| BstSCI | CCNGG | 2 cut(s) | 63, 314 |
| BstSLI | GKGCMC | 1 cut(s) | 224 |
| BstUI | CGCG | 1 cut(s) | 410 |
| BstV1I | GCAGC | 2 cut(s) | 323, 1057 |
| BstV2I | GAAGAC | 1 cut(s) | 509 |
| BstX2I | RGATCY | 5 cut(s) | 252, 356, 389, 954, 1122 |
| BstYI | RGATCY | 5 cut(s) | 252, 356, 389, 954, 1122 |
| BstZ17I | GTATAC | 1 cut(s) | 1166 |
| BstZI | CGGCCG | 1 cut(s) | 885 |
| Bsu15I | ATCGAT | 1 cut(s) | 614 |
| BsuRI | GGCC | 5 cut(s) | 380, 713, 776, 887, 899 |
| BsuTUI | ATCGAT | 1 cut(s) | 614 |
| BtgI | CCRYGG | 2 cut(s) | 393, 777 |
| BtgZI | GCGATG | 1 cut(s) | 346 |
| BtsCI | GGATG | 2 cut(s) | 561, 826 |
| BtsI | GCAGTG | 1 cut(s) | 936 |
| BtsIMutI | CAGTG | 3 cut(s) | 467, 936, 1096 |
| BveI | ACCTGC | 2 cut(s) | 149, 448 |
| Cac8I | GCNNGC | 6 cut(s) | 350, 536, 711, 897, 970, 1137 |
| CciI | TCATGA | 1 cut(s) | 54 |
| CfoI | GCGC | 1 cut(s) | 410 |
| Cfr13I | GGNCC | 1 cut(s) | 897 |
| ClaI | ATCGAT | 1 cut(s) | 614 |
| CseI | GACGC | 4 cut(s) | 232, 317, 463, 1015 |
| Csp6I | GTAC | 1 cut(s) | 431 |
| CviAII | CATG | 6 cut(s) | 55, 394, 871, 914, 1136, 1146 |
| CviQI | GTAC | 1 cut(s) | 431 |
| DdeI | CTNAG | 4 cut(s) | 353, 470, 608, 660 |
| EaeI | YGGCCR | 1 cut(s) | 885 |
| EagI | CGGCCG | 1 cut(s) | 885 |
| Eam1104I | CTCTTC | 1 cut(s) | 1145 |
| EarI | CTCTTC | 1 cut(s) | 1145 |
| Ecl136II | GAGCTC | 4 cut(s) | 538, 811, 904, 1155 |
| EclXI | CGGCCG | 1 cut(s) | 885 |
| Eco130I | CCWWGG | 3 cut(s) | 393, 752, 1104 |
| Eco147I | AGGCCT | 1 cut(s) | 713 |
| Eco24I | GRGCYC | 4 cut(s) | 540, 813, 906, 1157 |
| Eco31I | GGTCTC | 1 cut(s) | 649 |
| Eco52I | CGGCCG | 1 cut(s) | 885 |
| Eco53kI | GAGCTC | 4 cut(s) | 538, 811, 904, 1155 |
| EcoICRI | GAGCTC | 4 cut(s) | 538, 811, 904, 1155 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 94 |
| EcoRII | CCWGG | 1 cut(s) | 314 |
| EcoT14I | CCWWGG | 3 cut(s) | 393, 752, 1104 |
| EcoT22I | ATGCAT | 1 cut(s) | 1137 |
| EcoT38I | GRGCYC | 4 cut(s) | 540, 813, 906, 1157 |
| ErhI | CCWWGG | 3 cut(s) | 393, 752, 1104 |
| FaeI | CATG | 6 cut(s) | 58, 397, 874, 917, 1139, 1149 |
| FaiI | YATR | 7 cut(s) | 56, 395, 872, 915, 1137, 1147, 1166 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 559, 591, 1055, 1087 |
| FatI | CATG | 6 cut(s) | 54, 393, 870, 913, 1135, 1145 |
| FauI | CCCGC | 1 cut(s) | 888 |
| FbaI | TGATCA | 2 cut(s) | 645, 738 |
| FblI | GTMKAC | 1 cut(s) | 1165 |
| Fnu4HI | GCNGC | 2 cut(s) | 312, 1046 |
| FokI | GGATG | 2 cut(s) | 548, 833 |
| FriOI | GRGCYC | 4 cut(s) | 540, 813, 906, 1157 |
| Fsp4HI | GCNGC | 2 cut(s) | 312, 1046 |
| FspBI | CTAG | 2 cut(s) | 521, 1118 |
| GlaI | GCGC | 1 cut(s) | 409 |
| GluI | GCNGC | 2 cut(s) | 312, 1046 |
| GsaI | CCCAGC | 1 cut(s) | 1052 |
| GsuI | CTGGAG | 2 cut(s) | 109, 494 |
| HaeIII | GGCC | 5 cut(s) | 380, 713, 776, 887, 899 |
| HapII | CCGG | 3 cut(s) | 65, 199, 786 |
| HgaI | GACGC | 4 cut(s) | 232, 317, 463, 1015 |
| HhaI | GCGC | 1 cut(s) | 410 |
| Hin1I | GRCGYC | 1 cut(s) | 243 |
| Hin1II | CATG | 6 cut(s) | 58, 397, 874, 917, 1139, 1149 |
| Hin6I | GCGC | 1 cut(s) | 408 |
| HinP1I | GCGC | 1 cut(s) | 408 |
| HindIII | AAGCTT | 2 cut(s) | 213, 1064 |
| HinfI | GANTC | 8 cut(s) | 398, 500, 514, 545, 581, 768, 841, 988 |
| HpaII | CCGG | 3 cut(s) | 65, 199, 786 |
| HphI | GGTGA | 3 cut(s) | 79, 819, 994 |
| Hpy166II | GTNNAC | 3 cut(s) | 222, 1087, 1166 |
| Hpy188I | TCNGA | 4 cut(s) | 169, 370, 499, 699 |
| Hpy8I | GTNNAC | 3 cut(s) | 222, 1087, 1166 |
| Hpy99I | CGWCG | 6 cut(s) | 17, 82, 248, 311, 407, 1021 |
| HpyAV | CCTTC | 3 cut(s) | 824, 831, 955 |
| HpyCH4III | ACNGT | 3 cut(s) | 327, 735, 1091 |
| HpyCH4IV | ACGT | 1 cut(s) | 15 |
| HpyCH4V | TGCA | 9 cut(s) | 49, 222, 730, 929, 1005, 1033, 1045, 1135, 1139 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 531, 719, 782, 901, 910, 926 |
| HpyF3I | CTNAG | 4 cut(s) | 353, 470, 608, 660 |
| HpySE526I | ACGT | 1 cut(s) | 15 |
| Hsp92I | GRCGYC | 1 cut(s) | 243 |
| Hsp92II | CATG | 6 cut(s) | 58, 397, 874, 917, 1139, 1149 |
| HspAI | GCGC | 1 cut(s) | 408 |
| Ksp22I | TGATCA | 2 cut(s) | 645, 738 |
| LguI | GCTCTTC | 1 cut(s) | 1145 |
| LmnI | GCTCC | 6 cut(s) | 213, 788, 816, 909, 1095, 1160 |
| Lsp1109I | GCAGC | 2 cut(s) | 323, 1057 |
| LweI | GCATC | 3 cut(s) | 114, 594, 811 |
| MaeI | CTAG | 2 cut(s) | 521, 1118 |
| MaeII | ACGT | 1 cut(s) | 15 |
| MaeIII | GTNAC | 3 cut(s) | 67, 148, 331 |
| MflI | RGATCY | 5 cut(s) | 252, 356, 389, 954, 1122 |
| MhlI | GDGCHC | 6 cut(s) | 224, 540, 813, 867, 906, 1157 |
| MluCI | AATT | 1 cut(s) | 1174 |
| MlyI | GAGTC | 4 cut(s) | 523, 554, 590, 835 |
| MmeI | TCCRAC | 1 cut(s) | 192 |
| Mph1103I | ATGCAT | 1 cut(s) | 1137 |
| MroXI | GAANNNNTTC | 1 cut(s) | 678 |
| MseI | TTAA | 3 cut(s) | 302, 438, 795 |
| MspA1I | CMGCKG | 1 cut(s) | 1048 |
| MspI | CCGG | 3 cut(s) | 65, 199, 786 |
| MspR9I | CCNGG | 2 cut(s) | 65, 316 |
| MvaI | CCWGG | 1 cut(s) | 316 |
| MvnI | CGCG | 1 cut(s) | 410 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 531, 719, 782, 901, 910, 926 |
| NciI | CCSGG | 1 cut(s) | 65 |
| NcoI | CCATGG | 1 cut(s) | 393 |
| NlaIII | CATG | 6 cut(s) | 58, 397, 874, 917, 1139, 1149 |
| NlaIV | GGNNCC | 2 cut(s) | 254, 790 |
| NmeAIII | GCCGAG | 4 cut(s) | 863, 913, 925, 992 |
| NmuCI | GTSAC | 2 cut(s) | 67, 331 |
| NsiI | ATGCAT | 1 cut(s) | 1137 |
| NspI | RCATGY | 1 cut(s) | 1139 |
| NspV | TTCGAA | 1 cut(s) | 938 |
| PaeI | GCATGC | 1 cut(s) | 1139 |
| PagI | TCATGA | 1 cut(s) | 54 |
| PaqCI | CACCTGC | 1 cut(s) | 149 |
| PceI | AGGCCT | 1 cut(s) | 713 |
| PciSI | GCTCTTC | 1 cut(s) | 1145 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 965 |
| PdmI | GAANNNNTTC | 1 cut(s) | 678 |
| PfeI | GAWTC | 4 cut(s) | 398, 500, 768, 988 |
| PkrI | GCNGC | 2 cut(s) | 313, 1047 |
| PleI | GAGTC | 4 cut(s) | 522, 553, 589, 835 |
| PpsI | GAGTC | 4 cut(s) | 522, 553, 589, 835 |
| Psp124BI | GAGCTC | 4 cut(s) | 540, 813, 906, 1157 |
| Psp6I | CCWGG | 1 cut(s) | 314 |
| PspFI | CCCAGC | 1 cut(s) | 1048 |
| PspGI | CCWGG | 1 cut(s) | 314 |
| PspN4I | GGNNCC | 2 cut(s) | 254, 790 |
| PspPI | GGNCC | 1 cut(s) | 897 |
| PsuI | RGATCY | 5 cut(s) | 252, 356, 389, 954, 1122 |
| PvuII | CAGCTG | 1 cut(s) | 1048 |
| RsaI | GTAC | 1 cut(s) | 432 |
| RsaNI | GTAC | 1 cut(s) | 431 |
| SacI | GAGCTC | 4 cut(s) | 540, 813, 906, 1157 |
| SapI | GCTCTTC | 1 cut(s) | 1145 |
| SaqAI | TTAA | 3 cut(s) | 302, 438, 795 |
| SatI | GCNGC | 2 cut(s) | 312, 1046 |
| Sau96I | GGNCC | 1 cut(s) | 897 |
| SchI | GAGTC | 4 cut(s) | 523, 554, 590, 835 |
| ScrFI | CCNGG | 2 cut(s) | 65, 316 |
| SduI | GDGCHC | 6 cut(s) | 224, 540, 813, 867, 906, 1157 |
| SfaNI | GCATC | 3 cut(s) | 114, 594, 811 |
| SfuI | TTCGAA | 1 cut(s) | 938 |
| SmlI | CTYRAG | 2 cut(s) | 652, 908 |
| SmoI | CTYRAG | 2 cut(s) | 652, 908 |
| SphI | GCATGC | 1 cut(s) | 1139 |
| Sse9I | AATT | 1 cut(s) | 1174 |
| SseBI | AGGCCT | 1 cut(s) | 713 |
| SsiI | CCGC | 6 cut(s) | 202, 346, 410, 504, 895, 980 |
| SspMI | CTAG | 2 cut(s) | 521, 1118 |
| SstI | GAGCTC | 4 cut(s) | 540, 813, 906, 1157 |
| StuI | AGGCCT | 1 cut(s) | 713 |
| StyD4I | CCNGG | 2 cut(s) | 63, 314 |
| StyI | CCWWGG | 3 cut(s) | 393, 752, 1104 |
| TaaI | ACNGT | 3 cut(s) | 327, 735, 1091 |
| TaiI | ACGT | 1 cut(s) | 18 |
| TasI | AATT | 1 cut(s) | 1174 |
| TfiI | GAWTC | 4 cut(s) | 398, 500, 768, 988 |
| Tru1I | TTAA | 3 cut(s) | 302, 438, 795 |
| Tru9I | TTAA | 3 cut(s) | 302, 438, 795 |
| TscAI | CASTG | 3 cut(s) | 474, 936, 1096 |
| TseFI | GTSAC | 2 cut(s) | 67, 331 |
| TseI | GCWGC | 2 cut(s) | 311, 1045 |
| Tsp45I | GTSAC | 2 cut(s) | 67, 331 |
| TspDTI | ATGAA | 3 cut(s) | 19, 71, 653 |
| TspGWI | ACGGA | 2 cut(s) | 319, 391 |
| TspRI | CASTG | 3 cut(s) | 474, 936, 1096 |
| VneI | GTGCAC | 1 cut(s) | 220 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 94 |
| XbaI | TCTAGA | 1 cut(s) | 1117 |
| XceI | RCATGY | 1 cut(s) | 1139 |
| XmiI | GTMKAC | 1 cut(s) | 1165 |
| XmnI | GAANNNNTTC | 1 cut(s) | 678 |
| XspI | CTAG | 2 cut(s) | 521, 1118 |
| Zsp2I | ATGCAT | 1 cut(s) | 1137 |