FvH4_6g20400

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
14020707 .. 14022304
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20400.t1

Sequence Viewer

Length: 1200 bp
ATGGAAGAAATCGACGTTCCATCGTTCTTCATCTGCCCAATCTCTCTGCAAATCATGAAAGACCCGGTGACTATCTCGACGGGGATAACCTACGACAGGGAGAGCATCGAGAAGTGGCTTTTCTCCAGCAAGAACAACACCTGCCCCGTAACCAAACAAGTAGTTTCCGACCCCGACTTGACCCCCAACCACACTCTCCGGCGGTTGCTCCAAGCTTGGTGCACACTCAACGCTTCTCACGGCGTCGAGAGGATCCCAACTCCAAAGCCTCCCGTCAGCAAAGCTCAAATCTCCAAGCTGTTAAACGACGCAGCCAGGTCGCCACAGTCCGTCACAAAATGCCTCCGCAGGCTTAGATCCATCGCCTCCGAGAGCGAGGCCAACAAAAGATCCATGGAATCCGTCGGCGCGGTTGAGTTTTTGGCTTCGGTACTCCTTAAAGGAGATACTGAACAGCAGGTAGAAGCACTGAGCGTCCTCTACAATCTTCAAGTCTCGGAATCCGCACTCCAGAGTCTTCTAGGCAAAGAAAGCGAGCTCATCGAGTCGTTGGTAAAGCTCATCCAAAGAGGCACTTACGAGTCGAGAGCTTACGCCGTGATGATGCTGAGATCGATGTTTGAAGTCGCCGATACAATGAAGATGATCAACTTGAGACCTGAGTTCTTCTGCGAAGTAGTTCAGGTCTTGAAAGATCAGATTTCCACGCAGGCCTCAAAAGCCACATTGCAACTGTTGATCAAAGTCTGTCCTTGGGGAAGAAACCGAATCAAGGCCGTGGAAGCCGGAGCCGTTAATGTCTTGATCGAGCTCCTTCTGGATGCTTCACCAGACAGAAGGACTCACGAGATGGCAATGATGGTGCTCGACATGGCTTGTAGCTCGGCCGAGGGGCGGGCCGAGCTCCTCAAGCATGGTGCTGGTCTTGCAGTGGTTTCGAAGAAGATAATGAGGATCTCGAAGGTAGCGAGCGAGAGGGCGGTGAGGATTCTGTTCTCGATTTGCAAGTTCTCGGCGACGAGTAGCGTCTTGCAAGAAATGTTGCAGCTGGGTGTAGTGGCAAAGCTTTGCTTGGTGCTTCAAGTGGACAGTGGGAGCAAGACCAAGGAAAAGGCTCTAGAGATCTTGAAAATGCATGCAAGGACATGGAAGAGCTCCACCTGTATACCAAACAATTTGATTTCTTCTTATCCTTCTTGA

Protein Analysis

400

Amino Acids

44.19

Weight (kDa)

9.0

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 6 - 75 3.1e-19 U-box domain
ARM_PUB PF25598 97 - 397 2.7e-83 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35930
fragaria_vesca FvH4_6g20400
malus_domestica MD12G1040900.v1.1 MD14G1040300.v1.1
prunus_persica Prupe.7G094000_v2.0.a1
pyrus_communis pycom12g03520 pycom14g03420
rosa_chinensis RchiOBHm_Chr3g0476101
rosa_laevigata RLG00000023790
rosa_multiflora Rmu_sc0000114.1_g000029
rosa_roxburghii Rroxscaffold_6G00405470
rosa_rugosa Rorug03G0152800
rosa_samantha Rh3AG203800 Rh3BG234100 Rh3CG229400 Rh3DG229300
rosa_wichuraiana Rw3G018520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc36I ACCTGC 2 cut(s) 149, 448
AccI GTMKAC 1 cut(s) 1165
AccII CGCG 1 cut(s) 410
AciI CCGC 6 cut(s) 202, 346, 410, 504, 895, 980
AclWI GGATC 5 cut(s) 247, 260, 351, 384, 962
AcoI YGGCCR 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 3 cut(s) 96, 772, 894
AgsI TTSAA 5 cut(s) 491, 623, 691, 1082, 1129
AjnI CCWGG 1 cut(s) 314
Alw21I GWGCWC 6 cut(s) 224, 540, 813, 867, 906, 1157
Alw26I GTCTC 2 cut(s) 499, 649
Alw44I GTGCAC 1 cut(s) 220
AlwI GGATC 5 cut(s) 247, 260, 351, 384, 962
AoxI GGCC 5 cut(s) 378, 711, 774, 885, 897
ApaLI GTGCAC 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 311, 1045
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 897
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 3 cut(s) 79, 819, 994
AsuII TTCGAA 1 cut(s) 938
BaeGI GKGCMC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 252
BanII GRGCYC 4 cut(s) 540, 813, 906, 1157
BauI CACGAG 1 cut(s) 845
BbsI GAAGAC 1 cut(s) 509
Bbv12I GWGCWC 6 cut(s) 224, 540, 813, 867, 906, 1157
BbvI GCAGC 2 cut(s) 323, 1057
BccI CCATC 4 cut(s) 28, 368, 844, 853
BceAI ACGGC 4 cut(s) 256, 581, 761, 776
BcgI CGANNNNNNTGC 4 cut(s) 300, 334, 918, 952
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 2 cut(s) 645, 738
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 499, 649
BfaI CTAG 2 cut(s) 521, 1118
BfuAI ACCTGC 2 cut(s) 149, 448
BglII AGATCT 1 cut(s) 1122
BisI GCNGC 2 cut(s) 312, 1046
BlsI GCNGC 2 cut(s) 313, 1047
Bme1390I CCNGG 2 cut(s) 65, 316
BmgT120I GGNCC 1 cut(s) 897
BmiI GGNNCC 2 cut(s) 254, 790
BmrFI CCNGG 2 cut(s) 65, 316
BmsI GCATC 3 cut(s) 114, 594, 811
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 2 cut(s) 109, 494
Bpu14I TTCGAA 1 cut(s) 938
BpuEI CTTGAG 2 cut(s) 673, 893
BpuMI CCSGG 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 614
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 649
BsaJI CCNNGG 5 cut(s) 393, 752, 777, 888, 1104
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 772, 894
Bse3DI GCAATG 2 cut(s) 725, 861
BseBI CCWGG 1 cut(s) 316
BseCI ATCGAT 1 cut(s) 614
BseDI CCNNGG 5 cut(s) 393, 752, 777, 888, 1104
BseGI GGATG 2 cut(s) 561, 826
BseLI CCNNNNNNNGG 3 cut(s) 96, 772, 894
BseMI GCAATG 2 cut(s) 725, 861
BseMII CTCAG 3 cut(s) 461, 599, 651
BseRI GAGGAG 1 cut(s) 896
BseSI GKGCMC 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 885
BseXI GCAGC 2 cut(s) 323, 1057
BseYI CCCAGC 1 cut(s) 1048
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 888
BshFI GGCC 5 cut(s) 380, 713, 776, 887, 899
BshVI ATCGAT 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 888
BsiHKAI GWGCWC 6 cut(s) 224, 540, 813, 867, 906, 1157
BsiSI CCGG 3 cut(s) 65, 199, 786
BslI CCNNNNNNNGG 3 cut(s) 96, 772, 894
BsmAI GTCTC 2 cut(s) 499, 649
BsnI GGCC 5 cut(s) 380, 713, 776, 887, 899
Bso31I GGTCTC 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 938
Bsp1286I GDGCHC 6 cut(s) 224, 540, 813, 867, 906, 1157
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 6 cut(s) 202, 346, 410, 504, 895, 980
BspANI GGCC 5 cut(s) 380, 713, 776, 887, 899
BspCNI CTCAG 3 cut(s) 462, 600, 652
BspDI ATCGAT 1 cut(s) 614
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 254, 790
BspMI ACCTGC 2 cut(s) 149, 448
BspPI GGATC 5 cut(s) 247, 260, 351, 384, 962
BspQI GCTCTTC 1 cut(s) 1145
BspT104I TTCGAA 1 cut(s) 938
BspTNI GGTCTC 1 cut(s) 649
BsrDI GCAATG 2 cut(s) 725, 861
BssECI CCNNGG 5 cut(s) 393, 752, 777, 888, 1104
BssNAI GTATAC 1 cut(s) 1166
BssNI GRCGYC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 845
BssT1I CCWWGG 3 cut(s) 393, 752, 1104
Bst1107I GTATAC 1 cut(s) 1166
Bst2BI CACGAG 1 cut(s) 845
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 327, 735, 1091
Bst6I CTCTTC 1 cut(s) 1145
BstACI GRCGYC 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 938
BstC8I GCNNGC 6 cut(s) 350, 536, 711, 897, 970, 1137
BstDEI CTNAG 4 cut(s) 353, 470, 608, 660
BstDSI CCRYGG 2 cut(s) 393, 777
BstENI CCTNNNNNAGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 561, 826
BstFNI CGCG 1 cut(s) 410
BstHHI GCGC 1 cut(s) 410
BstMAI GTCTC 2 cut(s) 499, 649
BstMCI CGRYCG 1 cut(s) 888
BstMWI GCNNNNNNNGC 6 cut(s) 531, 719, 782, 901, 910, 926
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 1139
BstSCI CCNGG 2 cut(s) 63, 314
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 2 cut(s) 323, 1057
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 5 cut(s) 252, 356, 389, 954, 1122
BstYI RGATCY 5 cut(s) 252, 356, 389, 954, 1122
BstZ17I GTATAC 1 cut(s) 1166
BstZI CGGCCG 1 cut(s) 885
Bsu15I ATCGAT 1 cut(s) 614
BsuRI GGCC 5 cut(s) 380, 713, 776, 887, 899
BsuTUI ATCGAT 1 cut(s) 614
BtgI CCRYGG 2 cut(s) 393, 777
BtgZI GCGATG 1 cut(s) 346
BtsCI GGATG 2 cut(s) 561, 826
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 3 cut(s) 467, 936, 1096
BveI ACCTGC 2 cut(s) 149, 448
Cac8I GCNNGC 6 cut(s) 350, 536, 711, 897, 970, 1137
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 897
ClaI ATCGAT 1 cut(s) 614
CseI GACGC 4 cut(s) 232, 317, 463, 1015
Csp6I GTAC 1 cut(s) 431
CviAII CATG 6 cut(s) 55, 394, 871, 914, 1136, 1146
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 4 cut(s) 353, 470, 608, 660
EaeI YGGCCR 1 cut(s) 885
EagI CGGCCG 1 cut(s) 885
Eam1104I CTCTTC 1 cut(s) 1145
EarI CTCTTC 1 cut(s) 1145
Ecl136II GAGCTC 4 cut(s) 538, 811, 904, 1155
EclXI CGGCCG 1 cut(s) 885
Eco130I CCWWGG 3 cut(s) 393, 752, 1104
Eco147I AGGCCT 1 cut(s) 713
Eco24I GRGCYC 4 cut(s) 540, 813, 906, 1157
Eco31I GGTCTC 1 cut(s) 649
Eco52I CGGCCG 1 cut(s) 885
Eco53kI GAGCTC 4 cut(s) 538, 811, 904, 1155
EcoICRI GAGCTC 4 cut(s) 538, 811, 904, 1155
EcoNI CCTNNNNNAGG 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 314
EcoT14I CCWWGG 3 cut(s) 393, 752, 1104
EcoT22I ATGCAT 1 cut(s) 1137
EcoT38I GRGCYC 4 cut(s) 540, 813, 906, 1157
ErhI CCWWGG 3 cut(s) 393, 752, 1104
FaeI CATG 6 cut(s) 58, 397, 874, 917, 1139, 1149
FaiI YATR 7 cut(s) 56, 395, 872, 915, 1137, 1147, 1166
FalI AAGNNNNNCTT 4 cut(s) 559, 591, 1055, 1087
FatI CATG 6 cut(s) 54, 393, 870, 913, 1135, 1145
FauI CCCGC 1 cut(s) 888
FbaI TGATCA 2 cut(s) 645, 738
FblI GTMKAC 1 cut(s) 1165
Fnu4HI GCNGC 2 cut(s) 312, 1046
FokI GGATG 2 cut(s) 548, 833
FriOI GRGCYC 4 cut(s) 540, 813, 906, 1157
Fsp4HI GCNGC 2 cut(s) 312, 1046
FspBI CTAG 2 cut(s) 521, 1118
GlaI GCGC 1 cut(s) 409
GluI GCNGC 2 cut(s) 312, 1046
GsaI CCCAGC 1 cut(s) 1052
GsuI CTGGAG 2 cut(s) 109, 494
HaeIII GGCC 5 cut(s) 380, 713, 776, 887, 899
HapII CCGG 3 cut(s) 65, 199, 786
HgaI GACGC 4 cut(s) 232, 317, 463, 1015
HhaI GCGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 6 cut(s) 58, 397, 874, 917, 1139, 1149
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HindIII AAGCTT 2 cut(s) 213, 1064
HinfI GANTC 8 cut(s) 398, 500, 514, 545, 581, 768, 841, 988
HpaII CCGG 3 cut(s) 65, 199, 786
HphI GGTGA 3 cut(s) 79, 819, 994
Hpy166II GTNNAC 3 cut(s) 222, 1087, 1166
Hpy188I TCNGA 4 cut(s) 169, 370, 499, 699
Hpy8I GTNNAC 3 cut(s) 222, 1087, 1166
Hpy99I CGWCG 6 cut(s) 17, 82, 248, 311, 407, 1021
HpyAV CCTTC 3 cut(s) 824, 831, 955
HpyCH4III ACNGT 3 cut(s) 327, 735, 1091
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 9 cut(s) 49, 222, 730, 929, 1005, 1033, 1045, 1135, 1139
HpyF10VI GCNNNNNNNGC 6 cut(s) 531, 719, 782, 901, 910, 926
HpyF3I CTNAG 4 cut(s) 353, 470, 608, 660
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 6 cut(s) 58, 397, 874, 917, 1139, 1149
HspAI GCGC 1 cut(s) 408
Ksp22I TGATCA 2 cut(s) 645, 738
LguI GCTCTTC 1 cut(s) 1145
LmnI GCTCC 6 cut(s) 213, 788, 816, 909, 1095, 1160
Lsp1109I GCAGC 2 cut(s) 323, 1057
LweI GCATC 3 cut(s) 114, 594, 811
MaeI CTAG 2 cut(s) 521, 1118
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 3 cut(s) 67, 148, 331
MflI RGATCY 5 cut(s) 252, 356, 389, 954, 1122
MhlI GDGCHC 6 cut(s) 224, 540, 813, 867, 906, 1157
MluCI AATT 1 cut(s) 1174
MlyI GAGTC 4 cut(s) 523, 554, 590, 835
MmeI TCCRAC 1 cut(s) 192
Mph1103I ATGCAT 1 cut(s) 1137
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 3 cut(s) 302, 438, 795
MspA1I CMGCKG 1 cut(s) 1048
MspI CCGG 3 cut(s) 65, 199, 786
MspR9I CCNGG 2 cut(s) 65, 316
MvaI CCWGG 1 cut(s) 316
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 6 cut(s) 531, 719, 782, 901, 910, 926
NciI CCSGG 1 cut(s) 65
NcoI CCATGG 1 cut(s) 393
NlaIII CATG 6 cut(s) 58, 397, 874, 917, 1139, 1149
NlaIV GGNNCC 2 cut(s) 254, 790
NmeAIII GCCGAG 4 cut(s) 863, 913, 925, 992
NmuCI GTSAC 2 cut(s) 67, 331
NsiI ATGCAT 1 cut(s) 1137
NspI RCATGY 1 cut(s) 1139
NspV TTCGAA 1 cut(s) 938
PaeI GCATGC 1 cut(s) 1139
PagI TCATGA 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 149
PceI AGGCCT 1 cut(s) 713
PciSI GCTCTTC 1 cut(s) 1145
PcsI WCGNNNNNNNCGW 1 cut(s) 965
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 4 cut(s) 398, 500, 768, 988
PkrI GCNGC 2 cut(s) 313, 1047
PleI GAGTC 4 cut(s) 522, 553, 589, 835
PpsI GAGTC 4 cut(s) 522, 553, 589, 835
Psp124BI GAGCTC 4 cut(s) 540, 813, 906, 1157
Psp6I CCWGG 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 1048
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 254, 790
PspPI GGNCC 1 cut(s) 897
PsuI RGATCY 5 cut(s) 252, 356, 389, 954, 1122
PvuII CAGCTG 1 cut(s) 1048
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SacI GAGCTC 4 cut(s) 540, 813, 906, 1157
SapI GCTCTTC 1 cut(s) 1145
SaqAI TTAA 3 cut(s) 302, 438, 795
SatI GCNGC 2 cut(s) 312, 1046
Sau96I GGNCC 1 cut(s) 897
SchI GAGTC 4 cut(s) 523, 554, 590, 835
ScrFI CCNGG 2 cut(s) 65, 316
SduI GDGCHC 6 cut(s) 224, 540, 813, 867, 906, 1157
SfaNI GCATC 3 cut(s) 114, 594, 811
SfuI TTCGAA 1 cut(s) 938
SmlI CTYRAG 2 cut(s) 652, 908
SmoI CTYRAG 2 cut(s) 652, 908
SphI GCATGC 1 cut(s) 1139
Sse9I AATT 1 cut(s) 1174
SseBI AGGCCT 1 cut(s) 713
SsiI CCGC 6 cut(s) 202, 346, 410, 504, 895, 980
SspMI CTAG 2 cut(s) 521, 1118
SstI GAGCTC 4 cut(s) 540, 813, 906, 1157
StuI AGGCCT 1 cut(s) 713
StyD4I CCNGG 2 cut(s) 63, 314
StyI CCWWGG 3 cut(s) 393, 752, 1104
TaaI ACNGT 3 cut(s) 327, 735, 1091
TaiI ACGT 1 cut(s) 18
TasI AATT 1 cut(s) 1174
TfiI GAWTC 4 cut(s) 398, 500, 768, 988
Tru1I TTAA 3 cut(s) 302, 438, 795
Tru9I TTAA 3 cut(s) 302, 438, 795
TscAI CASTG 3 cut(s) 474, 936, 1096
TseFI GTSAC 2 cut(s) 67, 331
TseI GCWGC 2 cut(s) 311, 1045
Tsp45I GTSAC 2 cut(s) 67, 331
TspDTI ATGAA 3 cut(s) 19, 71, 653
TspGWI ACGGA 2 cut(s) 319, 391
TspRI CASTG 3 cut(s) 474, 936, 1096
VneI GTGCAC 1 cut(s) 220
XagI CCTNNNNNAGG 1 cut(s) 94
XbaI TCTAGA 1 cut(s) 1117
XceI RCATGY 1 cut(s) 1139
XmiI GTMKAC 1 cut(s) 1165
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 2 cut(s) 521, 1118
Zsp2I ATGCAT 1 cut(s) 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.