Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014232

Physical Location & Seq

Genomic Coordinates Reverse (-)

15509898 .. 15511607

Gene Structure 1710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTAGATGTCCGACTAGAAAAGTGAAGAAGAGGAGATTATCTCACAAAACAGCTCGCCGTGACAAATTCGAAGTCAAAGGCGATGACTTGGTTTACACAGAGTTGCGTAAACCGGAGACGGAGATTAAGCCGTTACAGCTTGACGAGGATTTGCCTGGAATGGGTCAATTCTACTGCTTACACTGCGATCGATACTTCTCCAACGTATCAGTGAGGGATGATCATTTCAAGACTAAGAAACACAAGAAGCGTGTGAATATGATGATGGGACAAGCGCCACACTCGCAACTCGATGCAGATTTAGCCGGGGGAATGGGGATGCCGGACAATGGCCCAAAGCTGATGTCTAATTTGGTATTCACAGAGTTGCGTAAACCAGAGACGGAGGATTTACCTGGAATGGGTCAATTCAACTGCTTACTCTGCCATCGGAACTTCTCCAATGCATCAGTGATGGATTATCATTTCAAGACTAAGAAACACAAAAAGCGTGTGAAGAAGATAGAGCGACCAGCGCCACACTCGCAACTCGATGCAGATTTAGCTGGTGGAATGGGAATGCCAGACAATGGTCCAAAGCTGATGTCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0003674 GO:0005488 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030687 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042886 GO:0043021 GO:0043023 GO:0044085 GO:0044877 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_jaz

Protein Analysis

198

Amino Acids

22.63

Weight (kDa)

9.55

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_jaz	PF12171	57 - 83	9.7e-10	Zinc-finger double-stranded RNA-binding
zf-C2H2_jaz	PF12171	137 - 163	5.4e-08	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36930
fragaria_vesca	FvH4_6g16440
malus_domestica	MD00G1155400.v1.1 MD12G1112600.v1.1
prunus_persica	Prupe.7G129700_v2.0.a1 Prupe.7G129700_v2.0.a1
pyrus_communis	pycom04g08760
rosa_chinensis	RchiOBHm_Chr3g0470301
rosa_laevigata	RLG00000024280
rosa_multiflora	Rmu_sc0002659.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410970
rosa_rugosa	Rorug03G0108000
rosa_samantha	Rh3AG157700 Rh3BG182000 Rh3CG172700 Rh3DG192900
rosa_wichuraiana	Rw3G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	68
AfiI	CCNNNNNNNGG	4 cut(s)	164, 332, 404, 572
AgsI	TTSAA	3 cut(s)	232, 415, 472
AjnI	CCWGG	2 cut(s)	157, 397
AluBI	AGCT	5 cut(s)	56, 142, 343, 548, 583
AluI	AGCT	5 cut(s)	56, 142, 343, 548, 583
Alw26I	GTCTC	2 cut(s)	113, 377
AoxI	GGCC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	68
ArsI	GACNNNNNNTTYG	5 cut(s)	60, 92, 332, 364, 572
AspLEI	GCGC	2 cut(s)	280, 520
AspS9I	GGNCC	2 cut(s)	335, 575
AsuC2I	CCSGG	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	575
BccI	CCATC	3 cut(s)	262, 438, 451
BceAI	ACGGC	2 cut(s)	45, 118
BciT130I	CCWGG	2 cut(s)	159, 399
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	113, 377
BfaI	CTAG	1 cut(s)	18
BfoI	RGCGCY	2 cut(s)	281, 521
Bme1390I	CCNGG	3 cut(s)	159, 310, 399
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	335, 575
BmrFI	CCNGG	3 cut(s)	159, 310, 399
BmsI	GCATC	4 cut(s)	286, 312, 458, 526
BoxI	GACNNNNGTC	1 cut(s)	573
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
Bpu14I	TTCGAA	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	310
Bsa29I	ATCGAT	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 332, 404, 572
BseBI	CCWGG	2 cut(s)	159, 399
BseCI	ATCGAT	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	226, 327
BseLI	CCNNNNNNNGG	4 cut(s)	164, 332, 404, 572
BseRI	GAGGAG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	336
BshVI	ATCGAT	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	116, 309, 326
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	4 cut(s)	164, 332, 404, 572
BsmAI	GTCTC	2 cut(s)	113, 377
BsmBI	CGTCTC	2 cut(s)	113, 377
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	190, 223
BspANI	GGCC	1 cut(s)	336
BspDI	ATCGAT	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	190, 223
Bst2UI	CCWGG	2 cut(s)	159, 399
Bst6I	CTCTTC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	237, 477
BstF5I	GGATG	2 cut(s)	226, 327
BstH2I	RGCGCY	2 cut(s)	281, 521
BstHHI	GCGC	2 cut(s)	280, 520
BstKTI	GATC	2 cut(s)	193, 226
BstMAI	GTCTC	2 cut(s)	113, 377
BstMBI	GATC	2 cut(s)	190, 223
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	8 cut(s)	139, 186, 286, 305, 426, 517, 526, 545
BstNI	CCWGG	2 cut(s)	159, 399
BstPAI	GACNNNNGTC	1 cut(s)	573
BstSCI	CCNGG	3 cut(s)	157, 308, 397
Bsu15I	ATCGAT	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	336
BsuTUI	ATCGAT	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	226, 327
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	3 cut(s)	184, 219, 459
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	2 cut(s)	280, 520
Cfr13I	GGNCC	2 cut(s)	335, 575
ClaI	ATCGAT	1 cut(s)	193
CviJI	RGCY	8 cut(s)	56, 133, 142, 308, 336, 343, 548, 583
CviKI_1	RGCY	8 cut(s)	56, 133, 142, 308, 336, 343, 548, 583
DdeI	CTNAG	2 cut(s)	237, 477
DpnI	GATC	2 cut(s)	192, 225
DpnII	GATC	2 cut(s)	190, 223
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	157, 397
EcoT22I	ATGCAT	1 cut(s)	451
Esp3I	CGTCTC	2 cut(s)	113, 377
FaiI	YATR	1 cut(s)	263
FaqI	GGGAC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	2 cut(s)	233, 334
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	2 cut(s)	279, 519
HaeII	RGCGCY	2 cut(s)	281, 521
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	3 cut(s)	116, 309, 326
HhaI	GCGC	2 cut(s)	280, 520
Hin6I	GCGC	2 cut(s)	278, 518
HinP1I	GCGC	2 cut(s)	278, 518
HpaII	CCGG	3 cut(s)	116, 309, 326
Hpy166II	GTNNAC	3 cut(s)	97, 113, 377
Hpy188I	TCNGA	2 cut(s)	15, 435
Hpy188III	TCNNGA	2 cut(s)	232, 472
Hpy8I	GTNNAC	3 cut(s)	97, 113, 377
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	299, 449, 539
HpyF10VI	GCNNNNNNNGC	8 cut(s)	139, 186, 286, 305, 426, 517, 526, 545
HpyF3I	CTNAG	2 cut(s)	237, 477
HpySE526I	ACGT	1 cut(s)	207
HspAI	GCGC	2 cut(s)	278, 518
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	190, 223
LweI	GCATC	4 cut(s)	286, 312, 458, 526
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	62, 135
MalI	GATC	2 cut(s)	192, 225
MboI	GATC	2 cut(s)	190, 223
MboII	GAAGA	4 cut(s)	40, 43, 511, 514
MluCI	AATT	4 cut(s)	68, 170, 352, 410
MmeI	TCCRAC	2 cut(s)	38, 228
MnlI	CCTC	4 cut(s)	27, 142, 210, 382
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	1 cut(s)	129
MspI	CCGG	3 cut(s)	116, 309, 326
MspR9I	CCNGG	3 cut(s)	159, 310, 399
Mva1269I	GAATGC	1 cut(s)	567
MvaI	CCWGG	2 cut(s)	159, 399
MwoI	GCNNNNNNNGC	8 cut(s)	139, 186, 286, 305, 426, 517, 526, 545
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	2 cut(s)	190, 223
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	72
PctI	GAATGC	1 cut(s)	567
PflMI	CCANNNNNTGG	1 cut(s)	572
Ple19I	CGATCG	1 cut(s)	193
PshAI	GACNNNNGTC	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	157, 397
PspGI	CCWGG	2 cut(s)	157, 397
PspPI	GGNCC	2 cut(s)	335, 575
PvuI	CGATCG	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	190, 223
Sau96I	GGNCC	2 cut(s)	335, 575
ScrFI	CCNGG	3 cut(s)	159, 310, 399
SetI	ASST	7 cut(s)	58, 144, 210, 345, 400, 550, 585
SfaNI	GCATC	4 cut(s)	286, 312, 458, 526
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	575
Sse9I	AATT	4 cut(s)	68, 170, 352, 410
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	3 cut(s)	157, 308, 397
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	72, 193, 294, 534
TasI	AATT	4 cut(s)	68, 170, 352, 410
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	3 cut(s)	191, 219, 459
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspGWI	ACGGA	2 cut(s)	137, 401
TspRI	CASTG	3 cut(s)	191, 219, 459
Van91I	CCANNNNNTGG	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	68
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.