Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014232

Physical Location & Seq

Genomic Coordinates Reverse (-)

17831833 .. 17832403

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1112600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTGTACGATGGTCTGAAGAAGGCAGAAGACGGGGCGAAGCCATTGCCTCAGGACCAGGACCTTCCTGGGATGGGTCAATACTACTGCCTACACTGCGACCGATACTTTAACAACGCATCGGTGAGGGACGATCATTTCAAGACGAAGCGTCACAAGAAGCGTGTTAAGATAATGATGGGGGATGCACCTCACACTCAGCTGGACGCTGATTTAGCTGCTGGGATGGGTATGCCTGATAATGGTCCCAAGCTTATGTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0003674 GO:0005488 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030687 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042886 GO:0043021 GO:0043023 GO:0044085 GO:0044877 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_jaz

Protein Analysis

89

Amino Acids

9.93

Weight (kDa)

7.8

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_jaz	PF12171	27 - 53	2e-10	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36930
fragaria_vesca	FvH4_6g16440
malus_domestica	MD00G1155400.v1.1 MD12G1112600.v1.1
prunus_persica	Prupe.7G129700_v2.0.a1 Prupe.7G129700_v2.0.a1
pyrus_communis	pycom04g08760
rosa_chinensis	RchiOBHm_Chr3g0470301
rosa_laevigata	RLG00000024280
rosa_multiflora	Rmu_sc0002659.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410970
rosa_rugosa	Rorug03G0108000
rosa_samantha	Rh3AG157700 Rh3BG182000 Rh3CG172700 Rh3DG192900
rosa_wichuraiana	Rw3G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	74, 242
AgsI	TTSAA	1 cut(s)	142
AhdI	GACNNNNNGTC	1 cut(s)	150
AjnI	CCWGG	2 cut(s)	57, 67
AluBI	AGCT	3 cut(s)	202, 218, 253
AluI	AGCT	3 cut(s)	202, 218, 253
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	55, 61, 245
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	3 cut(s)	55, 61, 245
AxyI	CCTNAGG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	4 cut(s)	5, 67, 172, 220
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	59, 69
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	59, 69
Bme18I	GGWCC	3 cut(s)	55, 61, 245
BmeRI	GACNNNNNGTC	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	55, 61, 245
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	59, 69
BmsI	GCATC	2 cut(s)	128, 175
BpiI	GAAGAC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 242
Bse21I	CCTNAGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	59, 69
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	3 cut(s)	78, 190, 231
BseLI	CCNNNNNNNGG	2 cut(s)	74, 242
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	2 cut(s)	65, 212
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	103
BslFI	GGGAC	2 cut(s)	143, 231
BslI	CCNNNNNNNGG	2 cut(s)	74, 242
BsmFI	GGGAC	2 cut(s)	143, 231
Bsp143I	GATC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	64, 211
BspLI	GGNNCC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	59, 69
BstDEI	CTNAG	2 cut(s)	51, 198
BstF5I	GGATG	3 cut(s)	78, 190, 231
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 215
BstNI	CCWGG	2 cut(s)	59, 69
BstSCI	CCNGG	2 cut(s)	57, 67
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	36
Bsu36I	CCTNAGG	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	78, 190, 231
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	55, 61, 245
CseI	GACGC	2 cut(s)	140, 215
Csp6I	GTAC	1 cut(s)	7
CviJI	RGCY	4 cut(s)	43, 202, 218, 253
CviKI_1	RGCY	4 cut(s)	43, 202, 218, 253
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	51, 198
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
DriI	GACNNNNNGTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	55, 61, 245
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	57, 67
FaiI	YATR	2 cut(s)	233, 257
FaqI	GGGAC	2 cut(s)	143, 231
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	3 cut(s)	85, 197, 238
Fsp4HI	GCNGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	225
HgaI	GACGC	2 cut(s)	140, 215
HindIII	AAGCTT	1 cut(s)	251
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	53, 142
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	2 cut(s)	16, 74
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 215
HpyF3I	CTNAG	2 cut(s)	51, 198
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	8 cut(s)	38, 44, 54, 71, 81, 188, 207, 249
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	2 cut(s)	128, 175
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	31, 41
MnlI	CCTC	3 cut(s)	60, 120, 201
MseI	TTAA	2 cut(s)	111, 168
MspA1I	CMGCKG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	59, 69
MvaI	CCWGG	2 cut(s)	59, 69
MwoI	GCNNNNNNNGC	2 cut(s)	96, 215
NdeII	GATC	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	57, 67
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	57, 67
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	3 cut(s)	55, 61, 245
PspPPI	RGGWCCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	111, 168
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	3 cut(s)	55, 61, 245
ScrFI	CCNGG	2 cut(s)	59, 69
SetI	ASST	5 cut(s)	66, 193, 204, 220, 255
SfaNI	GCATC	2 cut(s)	128, 175
SinI	GGWCC	3 cut(s)	55, 61, 245
StyD4I	CCNGG	2 cut(s)	57, 67
TaqII	GACCGA	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	111, 168
Tru9I	TTAA	2 cut(s)	111, 168
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	152
TspRI	CASTG	1 cut(s)	101
VpaK11BI	GGWCC	3 cut(s)	55, 61, 245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.