Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014232

Physical Location & Seq

Genomic Coordinates Reverse (-)

10794463 .. 10795099

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGAGGCAAGTGCCCGCATAGAAGCGTCAAGAAACGAAGATACTCTCACAAGACTCACAGCCACGCCAAATTCGAAATCAAAGATATCCTTTTTTTTCTTCACCCACGTAACGACATGGTGTATGATGGTCTGAAGAAGTCAGAGGAGGAGGCGAAGCCATTGCCTCAGGACCAGGACCTTCCTGGGATGGGCCAATACTACTGCCTACACTCAACTCGGTTTTGGAATTGCAGCCAATACTTTAACAATGCGCTGGTGAGGGACGATCATTTCAAGACAAGGCGTCACAAGAAGCGTGTGAAGATAATGATGGGGGATGCACCTCACACTCAGCTGGACGCTGATTTAGCTGCTGGGATGGGTATGCCAGATAATGGTCCCAAGCTTATGTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0003674 GO:0005488 GO:0005575 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0022613 GO:0030684 GO:0030687 GO:0031503 GO:0032991 GO:0033036 GO:0033750 GO:0034613 GO:0042254 GO:0042886 GO:0043021 GO:0043023 GO:0044085 GO:0044877 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_jaz

Protein Analysis

134

Amino Acids

15.51

Weight (kDa)

9.51

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36930
fragaria_vesca	FvH4_6g16440
malus_domestica	MD00G1155400.v1.1 MD12G1112600.v1.1
prunus_persica	Prupe.7G129700_v2.0.a1 Prupe.7G129700_v2.0.a1
pyrus_communis	pycom04g08760
rosa_chinensis	RchiOBHm_Chr3g0470301
rosa_laevigata	RLG00000024280
rosa_multiflora	Rmu_sc0002659.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410970
rosa_rugosa	Rorug03G0108000
rosa_samantha	Rh3AG157700 Rh3BG182000 Rh3CG172700 Rh3DG192900
rosa_wichuraiana	Rw3G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	191, 377
AgsI	TTSAA	1 cut(s)	277
AhdI	GACNNNNNGTC	1 cut(s)	285
AjnI	CCWGG	2 cut(s)	174, 184
AluBI	AGCT	3 cut(s)	337, 353, 388
AluI	AGCT	3 cut(s)	337, 353, 388
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	234, 353
ApoI	RAATTY	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	4 cut(s)	172, 178, 193, 380
AsuHPI	GGTGA	2 cut(s)	95, 271
AsuII	TTCGAA	1 cut(s)	75
AvaII	GGWCC	3 cut(s)	172, 178, 380
AxyI	CCTNAGG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	246, 340
BccI	CCATC	4 cut(s)	122, 184, 307, 355
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	2 cut(s)	176, 186
BisI	GCNGC	2 cut(s)	235, 354
BlsI	GCNGC	2 cut(s)	236, 355
Bme1390I	CCNGG	2 cut(s)	176, 186
Bme18I	GGWCC	3 cut(s)	172, 178, 380
BmeRI	GACNNNNNGTC	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	172, 178, 193, 380
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	2 cut(s)	176, 186
BmsI	GCATC	1 cut(s)	310
Bpu14I	TTCGAA	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 377
Bse21I	CCTNAGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	176, 186
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	3 cut(s)	195, 325, 366
BseLI	CCNNNNNNNGG	2 cut(s)	191, 377
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	2 cut(s)	182, 347
BseRI	GAGGAG	2 cut(s)	161, 164
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	246, 340
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	278, 366
BslI	CCNNNNNNNGG	2 cut(s)	191, 377
BsmFI	GGGAC	2 cut(s)	278, 366
BsnI	GGCC	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	181, 346
BspLI	GGNNCC	1 cut(s)	382
BspT104I	TTCGAA	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	268
BssNI	GRCGYC	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	176, 186
BstACI	GRCGYC	1 cut(s)	286
BstBAI	YACGTR	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	168, 333
BstF5I	GGATG	3 cut(s)	195, 325, 366
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	2 cut(s)	176, 186
BstSCI	CCNGG	2 cut(s)	174, 184
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	246, 340
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	195, 325, 366
Cac8I	GCNNGC	1 cut(s)	17
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	4 cut(s)	172, 178, 193, 380
CseI	GACGC	3 cut(s)	16, 275, 350
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	7 cut(s)	63, 160, 195, 237, 337, 353, 388
CviKI_1	RGCY	7 cut(s)	63, 160, 195, 237, 337, 353, 388
DdeI	CTNAG	2 cut(s)	168, 333
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DriI	GACNNNNNGTC	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	3 cut(s)	172, 178, 380
Eco57I	CTGAAG	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	174, 184
EcoRV	GATATC	1 cut(s)	88
FaeI	CATG	1 cut(s)	121
FaiI	YATR	5 cut(s)	21, 119, 126, 368, 392
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	278, 366
FatI	CATG	1 cut(s)	117
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	235, 354
FokI	GGATG	3 cut(s)	202, 332, 373
Fsp4HI	GCNGC	2 cut(s)	235, 354
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	235, 354
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	195
HgaI	GACGC	3 cut(s)	16, 275, 350
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	2 cut(s)	95, 271
Hpy188I	TCNGA	2 cut(s)	135, 145
Hpy188III	TCNNGA	3 cut(s)	31, 170, 277
HpyAV	CCTTC	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	234, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	168, 333
HpySE526I	ACGT	1 cut(s)	109
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	155, 161, 171, 188, 198, 242, 323, 342, 384
Lsp1109I	GCAGC	2 cut(s)	246, 340
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	2 cut(s)	110, 287
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	4 cut(s)	51, 92, 148, 316
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	71, 229
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	6 cut(s)	139, 142, 145, 177, 255, 336
MseI	TTAA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	176, 186
MvaI	CCWGG	2 cut(s)	176, 186
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	236, 355
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	174, 184
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	174, 184
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	4 cut(s)	172, 178, 193, 380
PspPPI	RGGWCCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	235, 354
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	4 cut(s)	172, 178, 193, 380
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	176, 186
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	6 cut(s)	112, 183, 328, 339, 355, 390
SfaNI	GCATC	1 cut(s)	310
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	3 cut(s)	172, 178, 380
Sse9I	AATT	2 cut(s)	71, 229
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	174, 184
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	71, 229
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	234, 353
Tsp45I	GTSAC	1 cut(s)	287
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	3 cut(s)	172, 178, 380
XapI	RAATTY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.