FvH4_6g16440

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014232
Physical Location & Seq
Forward (+)
10354863 .. 10356872
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16440.t1

Sequence Viewer

Length: 387 bp
ATGGGAGGCAAGTGCCCACACAGGAGCGTTAAGAAGAGACGATACTCCCACAAGACTCATCGCCGCAGCAAGTTCCTCGTGAAAGGCGACGATTTGGTGTACGATGGCCTGAAGAAAGCAGAGGATCAGATGACCCCGCCGGTGTTGCCTGTCGATGAAGACCTTCCTGGAATGGGCCAATACTACTGCCTTCACTGCGACCGGTACTTTGCTAATGTGACTGTGAGGGATGAGCATTTCAAGACTAAGCGTCACAGGAAGAGAGTAAAGCAGCTGATGGAGGCACCGCACACCCAACTGGATGCGGATTTAGCTGCCGGGATGGGTATGCCAGATAACGGGCCTAAGCTTATGGCAATAGGAGGGGTGCTGGACTGTCTGTTTTAG

Protein Analysis

129

Amino Acids

14.61

Weight (kDa)

9.34

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_jaz PF12171 60 - 86 5.4e-09 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36930
fragaria_vesca FvH4_6g16440
malus_domestica MD00G1155400.v1.1 MD12G1112600.v1.1
prunus_persica Prupe.7G129700_v2.0.a1 Prupe.7G129700_v2.0.a1
pyrus_communis pycom04g08760
rosa_chinensis RchiOBHm_Chr3g0470301
rosa_laevigata RLG00000024280
rosa_multiflora Rmu_sc0002659.1_g000001
rosa_roxburghii Rroxscaffold_6G00410970
rosa_rugosa Rorug03G0108000
rosa_samantha Rh3AG157700 Rh3BG182000 Rh3CG172700 Rh3DG192900
rosa_wichuraiana Rw3G015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 283
AciI CCGC 4 cut(s) 64, 137, 287, 305
AclWI GGATC 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 2 cut(s) 101, 206
AfiI CCNNNNNNNGG 2 cut(s) 173, 338
AgeI ACCGGT 1 cut(s) 201
AgsI TTSAA 1 cut(s) 241
AhdI GACNNNNNGTC 1 cut(s) 249
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 274, 314, 349
AluI AGCT 3 cut(s) 274, 314, 349
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 132
AoxI GGCC 3 cut(s) 106, 175, 341
ApeKI GCWGC 3 cut(s) 66, 271, 314
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AsiGI ACCGGT 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 175, 341
AsuC2I CCSGG 1 cut(s) 319
BaeGI GKGCMC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 283
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 78, 283, 301
BccI CCATC 3 cut(s) 98, 271, 316
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 168
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 31
BisI GCNGC 4 cut(s) 64, 67, 272, 315
BlsI GCNGC 4 cut(s) 65, 68, 273, 316
Bme1390I CCNGG 2 cut(s) 168, 319
BmeRI GACNNNNNGTC 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 175, 341
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 168, 319
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 338
Bse118I RCCGGY 2 cut(s) 139, 201
Bse1I ACTGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 235, 307, 327
BseLI CCNNNNNNNGG 2 cut(s) 173, 338
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 3 cut(s) 78, 283, 301
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 3 cut(s) 108, 177, 343
BshNI GGYRCC 1 cut(s) 283
BshTI ACCGGT 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 3 cut(s) 140, 202, 318
BslI CCNNNNNNNGG 2 cut(s) 173, 338
BsmAI GTCTC 1 cut(s) 31
BsmBI CGTCTC 1 cut(s) 31
BsnI GGCC 3 cut(s) 108, 177, 343
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 4 cut(s) 64, 137, 287, 305
BspANI GGCC 3 cut(s) 108, 177, 343
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 283
BsrFI RCCGGY 2 cut(s) 139, 201
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 2 cut(s) 139, 201
BssMI GATC 1 cut(s) 124
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 223, 377
Bst6I CTCTTC 2 cut(s) 29, 254
BstDEI CTNAG 2 cut(s) 246, 345
BstF5I GGATG 3 cut(s) 235, 307, 327
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 1 cut(s) 124
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 145, 195, 311
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 166, 317
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 78, 283, 301
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 3 cut(s) 108, 177, 343
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 3 cut(s) 235, 307, 327
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
Cfr10I RCCGGY 2 cut(s) 139, 201
Cfr13I GGNCC 2 cut(s) 175, 341
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 100, 205
CspAI ACCGGT 1 cut(s) 201
CviJI RGCY 6 cut(s) 108, 177, 274, 314, 343, 349
CviKI_1 RGCY 6 cut(s) 108, 177, 274, 314, 343, 349
CviQI GTAC 2 cut(s) 100, 205
DdeI CTNAG 2 cut(s) 246, 345
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DriI GACNNNNNGTC 1 cut(s) 249
Eam1104I CTCTTC 2 cut(s) 29, 254
Eam1105I GACNNNNNGTC 1 cut(s) 249
EarI CTCTTC 2 cut(s) 29, 254
Eco57I CTGAAG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 31
FaiI YATR 2 cut(s) 329, 353
FauI CCCGC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 64, 67, 272, 315
FokI GGATG 3 cut(s) 242, 314, 334
Fsp4HI GCNGC 4 cut(s) 64, 67, 272, 315
GluI GCNGC 4 cut(s) 64, 67, 272, 315
HaeIII GGCC 3 cut(s) 108, 177, 343
HapII CCGG 3 cut(s) 140, 202, 318
HgaI GACGC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 1 cut(s) 55
HpaII CCGG 3 cut(s) 140, 202, 318
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 79, 241
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 173, 200
HpyCH4III ACNGT 2 cut(s) 223, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 195, 311
HpyF3I CTNAG 2 cut(s) 246, 345
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 24
Lsp1109I GCAGC 3 cut(s) 78, 283, 301
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 217, 251
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 4 cut(s) 46, 124, 170, 271
MhlI GDGCHC 1 cut(s) 17
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 5 cut(s) 86, 115, 219, 274, 356
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 3 cut(s) 140, 202, 318
MspR9I CCNGG 2 cut(s) 168, 319
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 145, 195, 311
NciI CCSGG 1 cut(s) 319
NdeII GATC 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 217, 251
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 166
PinAI ACCGGT 1 cut(s) 201
PkrI GCNGC 4 cut(s) 65, 68, 273, 316
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 175, 341
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 2 cut(s) 101, 206
RsaNI GTAC 2 cut(s) 100, 205
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 4 cut(s) 64, 67, 272, 315
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 175, 341
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 168, 319
SduI GDGCHC 1 cut(s) 17
SetI ASST 4 cut(s) 165, 276, 316, 351
SfaNI GCATC 1 cut(s) 292
SgrAI CRCCGGYG 1 cut(s) 139
SsiI CCGC 4 cut(s) 64, 137, 287, 305
StyD4I CCNGG 2 cut(s) 166, 317
TaaI ACNGT 2 cut(s) 223, 377
TaqI TCGA 1 cut(s) 153
TauI GCSGC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 2 cut(s) 217, 251
TseI GCWGC 3 cut(s) 66, 271, 314
Tsp45I GTSAC 2 cut(s) 217, 251
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.