AT2G37030

Auxin-responsive family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015907
Physical Location & Seq
Forward (+)
15553651 .. 15554332
682 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37030.1

Sequence Viewer

Length: 375 bp
ATGAAGAGCAAGTTCATTAAGTCCTGTGAAAAGAAACTGAAAAAGATGACGAGCAAAGTCATAATACCTTGTGCGTCTTGCGAGTCATGCTACGAGAGAATTTGCTGGGCATTCAAGAAGGAAGCTGAGGTGATTCCAAGAGATGTCCCTAAGGGACATTTGGTTGTCTATGTGGGTGAAGAGTACAAGAGGTTTGTGATAAATATCAACCTGCTTAAACACCCACTCTTCCAAGCATTGCTGGATCAAGCACAGGATGCTTACGGTTTCAGTGCTGACTCCAGACTATGGATTCCATGCAATGAGAGTACTTTCCTCGATGTTGTCCGTTGCGCTGGTGCACCCCAGCATCAGAATAACTGCATATGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

124

Amino Acids

14.19

Weight (kDa)

8.73

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 12 - 110 2.5e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37030 AT3G53250 AT3G53250
fragaria_vesca FvH4_6g16110
malus_domestica MD04G1095800.v1.1 MD12G1115800.v1.1
prunus_persica Prupe.6G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469951
rosa_laevigata RLG00000024310
rosa_multiflora Rmu_sc0008347.1_g000002
rosa_rugosa Rorug03G0105600
rosa_samantha Rh3AG154600 Rh3BG178700 Rh3CG169300
rosa_wichuraiana Rw3G014570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccB7I CCANNNNNTGG 1 cut(s) 288
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 99
AfaI GTAC 2 cut(s) 185, 310
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 343
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 1 cut(s) 252
ApaLI GTGCAC 1 cut(s) 339
ApoI RAATTY 1 cut(s) 99
AspLEI GCGC 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 142, 188
AxyI CCTNAGG 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 343
BbvCI CCTCAGC 1 cut(s) 126
BfaI CTAG 1 cut(s) 373
BfuAI ACCTGC 1 cut(s) 219
BmcAI AGTACT 1 cut(s) 310
BmsI GCATC 2 cut(s) 247, 358
BpmI CTGGAG 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse21I CCTNAGG 1 cut(s) 150
Bse3DI GCAATG 2 cut(s) 236, 307
Bse8I GATNNNNATC 1 cut(s) 203
BseGI GGATG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 2 cut(s) 236, 307
BseMII CTCAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 343
BseYI CCCAGC 2 cut(s) 105, 345
BsiHKAI GWGCWC 1 cut(s) 343
BslFI GGGAC 2 cut(s) 131, 168
BslI CCNNNNNNNGG 1 cut(s) 288
BsmFI GGGAC 2 cut(s) 131, 168
BsmI GAATGC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 219
BspPI GGATC 1 cut(s) 252
BsrDI GCAATG 2 cut(s) 236, 307
BssMI GATC 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 2 cut(s) 174, 233
BstAPI GCANNNNNTGC 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 126, 150
BstF5I GGATG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 87, 257
BstSLI GKGCMC 1 cut(s) 343
Bsu36I CCTNAGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 277
BveI ACCTGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 335
CseI GACGC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 184, 309
CviAII CATG 2 cut(s) 87, 297
CviJI RGCY 1 cut(s) 125
CviKI_1 RGCY 1 cut(s) 125
CviQI GTAC 2 cut(s) 184, 309
DdeI CTNAG 2 cut(s) 126, 150
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 174, 233
EarI CTCTTC 2 cut(s) 174, 233
Eco81I CCTNAGG 1 cut(s) 150
FaeI CATG 2 cut(s) 90, 300
FaiI YATR 7 cut(s) 62, 88, 171, 289, 298, 365, 367
FaqI GGGAC 2 cut(s) 131, 168
FatI CATG 2 cut(s) 86, 296
FauNDI CATATG 1 cut(s) 365
FokI GGATG 1 cut(s) 269
FspBI CTAG 1 cut(s) 373
GlaI GCGC 1 cut(s) 334
GsaI CCCAGC 2 cut(s) 109, 349
GsuI CTGGAG 1 cut(s) 265
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 335
Hin1II CATG 2 cut(s) 90, 300
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HinfI GANTC 4 cut(s) 83, 133, 278, 292
HphI GGTGA 2 cut(s) 142, 188
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 2 cut(s) 115, 282
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 300, 341, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 257
HpyF3I CTNAG 2 cut(s) 126, 150
Hsp92II CATG 2 cut(s) 90, 300
HspAI GCGC 1 cut(s) 333
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 8 cut(s) 37, 91, 224, 227, 239, 295, 321, 359
LweI GCATC 2 cut(s) 247, 358
MaeI CTAG 1 cut(s) 373
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 3 cut(s) 16, 191, 220
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 1 cut(s) 99
MlyI GAGTC 2 cut(s) 92, 272
MnlI CCTC 3 cut(s) 121, 183, 326
MseI TTAA 2 cut(s) 18, 216
Mva1269I GAATGC 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 87, 257
NdeI CATATG 1 cut(s) 365
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 90, 300
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 133, 292
PflMI CCANNNNNTGG 1 cut(s) 288
PleI GAGTC 2 cut(s) 91, 272
PpsI GAGTC 2 cut(s) 91, 272
PspFI CCCAGC 2 cut(s) 105, 345
RsaI GTAC 2 cut(s) 185, 310
RsaNI GTAC 2 cut(s) 184, 309
SaqAI TTAA 2 cut(s) 18, 216
Sau3AI GATC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 2 cut(s) 92, 272
SduI GDGCHC 1 cut(s) 343
SetI ASST 5 cut(s) 70, 127, 132, 194, 213
SfaNI GCATC 2 cut(s) 247, 358
Sse9I AATT 1 cut(s) 99
SspMI CTAG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 318
TasI AATT 1 cut(s) 99
TatI WGTACW 2 cut(s) 183, 308
TfiI GAWTC 2 cut(s) 133, 292
Tru1I TTAA 2 cut(s) 18, 216
Tru9I TTAA 2 cut(s) 18, 216
TscAI CASTG 1 cut(s) 277
TspDTI ATGAA 2 cut(s) 4, 17
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 288
VneI GTGCAC 1 cut(s) 339
XapI RAATTY 1 cut(s) 99
XspI CTAG 1 cut(s) 373
ZrmI AGTACT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.