MD12G1115800.v1.1

Indole-3-acetic acid-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015907
Physical Location & Seq
Forward (+)
18457034 .. 18457417
384 bp
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UTR
Exon/CDS
Intron
MD12G1115800.v1.1.491

Sequence Viewer

Length: 384 bp
ATGTTGAAGGGGAAGTTTGTAAGGGTGTGTGCTAACAAGTGGAGGAAGATAGGGAGTAGAGAAAACACACCTTCTTCCTCATGCTGTGAAAACTGCTGCCAATGGGCTCTCTGGCCTTCCATGCAAGAAGAAAACTCAATCCCCAAAGATGTCCCAAAGGGTCACTTAGTAATCTATGTTGGTCAAAACCACAAGAGGTTTGTGATCAAAATCACCGTGCTTAACCACCCTCTCTTCAAGGCATTGCTCGATCAAGCTCGAGAAGAATACGATTACAATGCTGATTCAAAGCTCTACATCCCGTGCGACGAGAGCCTCTTCCTCGACGTTGTTCGCTGTGCTAGCTCGCCGGATGACCATCGAAGGATTCCTCTGTGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

128

Amino Acids

14.67

Weight (kDa)

8.43

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 12 - 112 1.3e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37030 AT3G53250 AT3G53250
fragaria_vesca FvH4_6g16110
malus_domestica MD04G1095800.v1.1 MD12G1115800.v1.1
prunus_persica Prupe.6G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469951
rosa_laevigata RLG00000024310
rosa_multiflora Rmu_sc0008347.1_g000002
rosa_rugosa Rorug03G0105600
rosa_samantha Rh3AG154600 Rh3BG178700 Rh3CG169300
rosa_wichuraiana Rw3G014570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 7, 238, 288
AluBI AGCT 3 cut(s) 257, 292, 345
AluI AGCT 3 cut(s) 257, 292, 345
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 205
AsuNHI GCTAGC 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 258
BanII GRGCYC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 366
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BclI TGATCA 1 cut(s) 204
BfaI CTAG 1 cut(s) 342
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 258
BmtI GCTAGC 1 cut(s) 345
BsaBI GATNNNNATC 2 cut(s) 209, 357
Bse3DI GCAATG 1 cut(s) 242
Bse8I GATNNNNATC 2 cut(s) 209, 357
BseGI GGATG 2 cut(s) 297, 358
BseJI GATNNNNATC 2 cut(s) 209, 357
BseMI GCAATG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 83
BshFI GGCC 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 204, 250
BspANI GGCC 1 cut(s) 115
BspOI GCTAGC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 242
BssMI GATC 2 cut(s) 204, 250
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 239, 323
BstC8I GCNNGC 2 cut(s) 343, 347
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 297, 358
BstKTI GATC 2 cut(s) 207, 253
BstMBI GATC 2 cut(s) 204, 250
BstMWI GCNNNNNNNGC 3 cut(s) 121, 312, 342
BstV1I GCAGC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 2 cut(s) 297, 358
Cac8I GCNNGC 2 cut(s) 343, 347
CviAII CATG 2 cut(s) 81, 121
CviJI RGCY 6 cut(s) 107, 115, 257, 292, 315, 345
CviKI_1 RGCY 6 cut(s) 107, 115, 257, 292, 315, 345
DdeI CTNAG 1 cut(s) 166
DpnI GATC 2 cut(s) 206, 252
DpnII GATC 2 cut(s) 204, 250
Eam1104I CTCTTC 2 cut(s) 239, 323
EarI CTCTTC 2 cut(s) 239, 323
Eco24I GRGCYC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 109
FaeI CATG 2 cut(s) 84, 124
FaiI YATR 3 cut(s) 82, 122, 177
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 80, 120
FbaI TGATCA 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 2 cut(s) 284, 365
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 97
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 350
Hin1II CATG 2 cut(s) 84, 124
HinfI GANTC 2 cut(s) 284, 367
HpaII CCGG 1 cut(s) 350
HphI GGTGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 260
Hpy99I CGWCG 2 cut(s) 311, 329
HpyAV CCTTC 3 cut(s) 81, 126, 357
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 312, 342
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 2 cut(s) 84, 124
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 2 cut(s) 204, 250
LpnPI CCDG 2 cut(s) 97, 363
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 206, 252
MboI GATC 2 cut(s) 204, 250
MboII GAAGA 6 cut(s) 58, 66, 140, 226, 275, 310
MhlI GDGCHC 1 cut(s) 109
MnlI CCTC 7 cut(s) 36, 88, 189, 240, 326, 332, 381
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 121, 312, 342
NdeII GATC 2 cut(s) 204, 250
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 2 cut(s) 84, 124
NmuCI GTSAC 1 cut(s) 161
PaeR7I CTCGAG 1 cut(s) 258
PfeI GAWTC 2 cut(s) 284, 367
PkrI GCNGC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 2 cut(s) 204, 250
SduI GDGCHC 1 cut(s) 109
SetI ASST 6 cut(s) 73, 200, 259, 294, 330, 347
Sfr274I CTCGAG 1 cut(s) 258
SlaI CTCGAG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
SspMI CTAG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 330
TaqI TCGA 4 cut(s) 249, 259, 324, 361
TfiI GAWTC 2 cut(s) 284, 367
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 161
XhoI CTCGAG 1 cut(s) 258
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.