RLG00000024310

Indole-3-acetic acid-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015907
Physical Location & Seq
Forward (+)
34358173 .. 34358535
363 bp
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UTR
Exon/CDS
Intron
RLM00000024310

Sequence Viewer

Length: 363 bp
ATGAAGGGGAAGTTTGCAAGGGTGTGCGCCAATAAGTTGAGGAAGATAGGTAATAAAGGAAGCATACCTTCTTCTTCTTCCTCGTGCTGCGAGCAATGCTGTCAATGGGCTCTGTGGCCAAACTCCATGCATGAAGAAAACTCGATCCCAAAAGATGTCCCAAAGGGTCACTTGGTAGTTTATGTAGGTGACAACCACAAGAGGTTTGTAATCAAACTCACCTTGCTCAATCACCCACTCTTCAGGGCACTTCTGGATCAAGCTCGAGAAGAATACGATTTCAATGCTCACTCAAAACTCTACATACCCTGCGATGAGAACCTCTTCCTCGAAGTTGTTCGATGTGCTAAGCTCTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

121

Amino Acids

13.73

Weight (kDa)

9.03

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 32 - 114 3.7e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0015907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37030 AT3G53250 AT3G53250
fragaria_vesca FvH4_6g16110
malus_domestica MD04G1095800.v1.1 MD12G1115800.v1.1
prunus_persica Prupe.6G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469951
rosa_laevigata RLG00000024310
rosa_multiflora Rmu_sc0008347.1_g000002
rosa_rugosa Rorug03G0105600
rosa_samantha Rh3AG154600 Rh3BG178700 Rh3CG169300
rosa_wichuraiana Rw3G014570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 139, 264
AcoI YGGCCR 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 226
AgsI TTSAA 1 cut(s) 283
AluBI AGCT 2 cut(s) 263, 352
AluI AGCT 2 cut(s) 263, 352
AlwI GGATC 2 cut(s) 139, 264
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 87
Asp700I GAANNNNTTC 2 cut(s) 323, 336
AspLEI GCGC 1 cut(s) 29
AsuHPI GGTGA 3 cut(s) 200, 211, 224
AvaI CYCGRG 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 118
BanII GRGCYC 1 cut(s) 112
BauI CACGAG 1 cut(s) 82
BbvI GCAGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BisI GCNGC 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 340
Bpu1102I GCTNAGC 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 112, 250
Bsp143I GATC 2 cut(s) 144, 256
Bsp1720I GCTNAGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 118
BspPI GGATC 2 cut(s) 139, 264
BsrDI GCAATG 1 cut(s) 101
BssMI GATC 2 cut(s) 144, 256
BssSI CACGAG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 245, 329
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 147, 259
BstMBI GATC 2 cut(s) 144, 256
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 29
CviAII CATG 2 cut(s) 127, 131
CviJI RGCY 4 cut(s) 110, 118, 263, 352
CviKI_1 RGCY 4 cut(s) 110, 118, 263, 352
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 146, 258
DpnII GATC 2 cut(s) 144, 256
EaeI YGGCCR 1 cut(s) 116
Eam1104I CTCTTC 2 cut(s) 245, 329
EarI CTCTTC 2 cut(s) 245, 329
Eco24I GRGCYC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 2 cut(s) 130, 134
FaiI YATR 5 cut(s) 65, 128, 132, 183, 305
FalI AAGNNNNNCTT 4 cut(s) 52, 84, 155, 187
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 126, 130
Fnu4HI GCNGC 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 88
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 1 cut(s) 118
HhaI GCGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 130, 134
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HphI GGTGA 3 cut(s) 200, 211, 224
Hpy188III TCNNGA 3 cut(s) 254, 266, 357
HpyAV CCTTC 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 17, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 2 cut(s) 130, 134
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 144, 256
LpnPI CCDG 3 cut(s) 229, 239, 322
Lsp1109I GCAGC 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 167, 188
MalI GATC 2 cut(s) 146, 258
MboI GATC 2 cut(s) 144, 256
MboII GAAGA 8 cut(s) 55, 63, 66, 69, 146, 232, 281, 316
MhlI GDGCHC 2 cut(s) 112, 250
MlsI TGGCCA 1 cut(s) 118
MluNI TGGCCA 1 cut(s) 118
MnlI CCTC 5 cut(s) 33, 91, 195, 332, 338
Mox20I TGGCCA 1 cut(s) 118
Mph1103I ATGCAT 1 cut(s) 132
MroXI GAANNNNTTC 2 cut(s) 323, 336
MscI TGGCCA 1 cut(s) 118
Msp20I TGGCCA 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 2 cut(s) 144, 256
NlaIII CATG 2 cut(s) 130, 134
NmuCI GTSAC 2 cut(s) 167, 188
NsiI ATGCAT 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 264
PdmI GAANNNNTTC 2 cut(s) 323, 336
PkrI GCNGC 1 cut(s) 89
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 144, 256
SduI GDGCHC 2 cut(s) 112, 250
SetI ASST 8 cut(s) 52, 70, 190, 206, 224, 265, 324, 354
Sfr274I CTCGAG 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
TaqI TCGA 4 cut(s) 143, 265, 330, 340
TseFI GTSAC 2 cut(s) 167, 188
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 2 cut(s) 167, 188
TspDTI ATGAA 2 cut(s) 17, 147
XhoI CTCGAG 1 cut(s) 264
XmnI GAANNNNTTC 2 cut(s) 323, 336
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.