AT3G53250

Auxin-responsive family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015907
Physical Location & Seq
Forward (+)
19742687 .. 19743583
897 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53250.2

Sequence Viewer

Length: 375 bp
ATGAAGAACAAGTTCATAAAATCATGCGAAAACAAATTCAGAATCATGAAGAGCAAATCCATAGTTCTACCTTGTTGTACATCTTCATGCGAGAGTTGCTGCGACAAGGTTTCTTGGGGATTCAAGAAGGAAAATGAAGCAATACCTAAAGATGTTCCGAGAGGACATTTGGTAGTGTATGTTGGTGATGATTACAAGAGGTTTGTGATAAAGATGAGTTTGCTTACTCATCCAATCTTTAAAGCATTGCTTGATCAAGCGCAAGATGCTTATAATTCATCAAGACTATGGATTCCATGTGATGAGAACACTTTTCTCGATGTTGTTCGTTGCAGTGGCGCTCCTCAGCATCAGAGAAACTGCATTGGCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

124

Amino Acids

14.18

Weight (kDa)

8.88

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 73 - 141 2.4e-18 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37030 AT3G53250 AT3G53250
fragaria_vesca FvH4_6g16110
malus_domestica MD04G1095800.v1.1 MD12G1115800.v1.1
prunus_persica Prupe.6G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469951
rosa_laevigata RLG00000024310
rosa_multiflora Rmu_sc0008347.1_g000002
rosa_rugosa Rorug03G0105600
rosa_samantha Rh3AG154600 Rh3BG178700 Rh3CG169300
rosa_wichuraiana Rw3G014570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 79
AgsI TTSAA 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 2 cut(s) 262, 341
AsuHPI GGTGA 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 86
BclI TGATCA 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
BmsI GCATC 2 cut(s) 256, 358
Bpu10I CCTNAGC 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 245
BseGI GGATG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 333
BseXI GCAGC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 77
Bsp143I GATC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 77
BssMI GATC 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 2 cut(s) 262, 341
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 96, 266
BstNSI RCATGY 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 340
CciI TCATGA 1 cut(s) 45
CfoI GCGC 2 cut(s) 262, 341
Csp6I GTAC 1 cut(s) 78
CviAII CATG 5 cut(s) 24, 46, 87, 297, 370
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
DraI TTTAAA 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
FaeI CATG 5 cut(s) 27, 49, 90, 300, 373
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 5 cut(s) 23, 45, 86, 296, 369
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 100
GlaI GCGC 2 cut(s) 261, 340
GluI GCNGC 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 342
HhaI GCGC 2 cut(s) 262, 341
Hin1II CATG 5 cut(s) 27, 49, 90, 300, 373
Hin6I GCGC 2 cut(s) 260, 339
HinP1I GCGC 2 cut(s) 260, 339
HinfI GANTC 3 cut(s) 42, 120, 292
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 3 cut(s) 41, 159, 354
Hpy188III TCNNGA 4 cut(s) 46, 124, 282, 317
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 333, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 266
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 5 cut(s) 27, 49, 90, 300, 373
HspAI GCGC 2 cut(s) 260, 339
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 1 cut(s) 253
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 256, 358
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 3 cut(s) 16, 61, 75
MluCI AATT 2 cut(s) 35, 274
MnlI CCTC 3 cut(s) 155, 192, 354
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 2 cut(s) 85, 368
MwoI GCNNNNNNNGC 2 cut(s) 96, 266
NdeII GATC 1 cut(s) 253
NlaIII CATG 5 cut(s) 27, 49, 90, 300, 373
NspI RCATGY 1 cut(s) 373
PagI TCATGA 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 42, 120, 292
PkrI GCNGC 1 cut(s) 101
PsiI TTATAA 1 cut(s) 273
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 2 cut(s) 85, 368
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 1 cut(s) 253
SetI ASST 4 cut(s) 73, 111, 148, 203
SfaNI GCATC 2 cut(s) 256, 358
SmiMI CAYNNNNRTG 2 cut(s) 85, 368
Sse9I AATT 2 cut(s) 35, 274
TaqI TCGA 1 cut(s) 318
TasI AATT 2 cut(s) 35, 274
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 3 cut(s) 42, 120, 292
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 340
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 6 cut(s) 4, 17, 62, 75, 150, 267
TspRI CASTG 1 cut(s) 340
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.