MD04G1095800.v1.1

Indole-3-acetic acid-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015907
Physical Location & Seq
Forward (+)
17659037 .. 17659420
384 bp
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UTR
Exon/CDS
Intron
MD04G1095800.v1.1.491

Sequence Viewer

Length: 384 bp
ATGATGAAGGGAAAGTTTGTAAGGGTGTGTGCAAACAAGTGGAGGAAGATAGGGAGTGGAGGGAGCATACCTTCTTCCACGTGCTGTGAAAACTGCTGCCAATGGCCTCTCTGGCCTTCCATGCAAGAAGAAAACTCCATCCCAAAAGATGTCCCAAAGGGTCACTTAGTAATCTACGTAGGTGAAAATCACAAGAGGTTTGTGATCAAAATCACCTTGCTTAACCACCCTCTCTTCAAGGCAGTGCTCGATCAAGCTCAAGAAGAATACGATTACAATGCTGATTCGAAGCTCTACATCCCGTGTGATGAGAGCCTTTTCCTCGACATTGTTCGCTGTGCTAGCTCGCCGGATGATCATCGAAGGATTCCTCTGTGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

128

Amino Acids

14.53

Weight (kDa)

7.56

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 34 - 112 1.8e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37030 AT3G53250 AT3G53250
fragaria_vesca FvH4_6g16110
malus_domestica MD04G1095800.v1.1 MD12G1115800.v1.1
prunus_persica Prupe.6G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469951
rosa_laevigata RLG00000024310
rosa_multiflora Rmu_sc0008347.1_g000002
rosa_rugosa Rorug03G0105600
rosa_samantha Rh3AG154600 Rh3BG178700 Rh3CG169300
rosa_wichuraiana Rw3G014570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 3 cut(s) 257, 292, 345
AluI AGCT 3 cut(s) 257, 292, 345
Alw21I GWGCWC 1 cut(s) 249
AoxI GGCC 2 cut(s) 104, 113
ApeKI GCWGC 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 194, 205
AsuII TTCGAA 1 cut(s) 287
AsuNHI GCTAGC 1 cut(s) 341
BbrPI CACGTG 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BclI TGATCA 2 cut(s) 204, 355
BfaI CTAG 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmtI GCTAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 243
BsaAI YACGTR 2 cut(s) 81, 178
BsaBI GATNNNNATC 2 cut(s) 209, 357
Bse8I GATNNNNATC 2 cut(s) 209, 357
BseGI GGATG 3 cut(s) 138, 297, 358
BseJI GATNNNNATC 2 cut(s) 209, 357
BseXI GCAGC 1 cut(s) 83
BshFI GGCC 2 cut(s) 106, 115
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 2 cut(s) 106, 115
Bsp119I TTCGAA 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 204, 250, 355
BspANI GGCC 2 cut(s) 106, 115
BspOI GCTAGC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 287
BssMI GATC 3 cut(s) 204, 250, 355
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 2 cut(s) 81, 178
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 343, 347
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 3 cut(s) 138, 297, 358
BstKTI GATC 3 cut(s) 207, 253, 358
BstMBI GATC 3 cut(s) 204, 250, 355
BstMWI GCNNNNNNNGC 3 cut(s) 112, 121, 342
BstSNI TACGTA 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 83
BsuRI GGCC 2 cut(s) 106, 115
BtsCI GGATG 3 cut(s) 138, 297, 358
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 343, 347
CviAII CATG 1 cut(s) 121
CviJI RGCY 6 cut(s) 106, 115, 257, 292, 315, 345
CviKI_1 RGCY 6 cut(s) 106, 115, 257, 292, 315, 345
DdeI CTNAG 1 cut(s) 166
DpnI GATC 3 cut(s) 206, 252, 357
DpnII GATC 3 cut(s) 204, 250, 355
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco105I TACGTA 1 cut(s) 178
Eco72I CACGTG 1 cut(s) 81
FaeI CATG 1 cut(s) 124
FaiI YATR 2 cut(s) 68, 122
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 120
FbaI TGATCA 2 cut(s) 204, 355
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 3 cut(s) 125, 284, 365
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 97
HaeIII GGCC 2 cut(s) 106, 115
HapII CCGG 1 cut(s) 350
Hin1II CATG 1 cut(s) 124
HinfI GANTC 2 cut(s) 284, 367
HpaII CCGG 1 cut(s) 350
HphI GGTGA 2 cut(s) 194, 205
Hpy188I TCNGA 1 cut(s) 383
Hpy188III TCNNGA 1 cut(s) 260
HpyAV CCTTC 3 cut(s) 81, 126, 357
HpyCH4IV ACGT 2 cut(s) 80, 177
HpyCH4V TGCA 2 cut(s) 32, 124
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 121, 342
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 2 cut(s) 80, 177
Hsp92II CATG 1 cut(s) 124
Ksp22I TGATCA 2 cut(s) 204, 355
Kzo9I GATC 3 cut(s) 204, 250, 355
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 2 cut(s) 97, 363
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 1 cut(s) 342
MaeII ACGT 2 cut(s) 80, 177
MaeIII GTNAC 1 cut(s) 161
MalI GATC 3 cut(s) 206, 252, 357
MboI GATC 3 cut(s) 204, 250, 355
MboII GAAGA 5 cut(s) 58, 66, 140, 226, 275
MhlI GDGCHC 1 cut(s) 249
MnlI CCTC 7 cut(s) 36, 53, 117, 189, 240, 332, 381
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 112, 121, 342
NdeII GATC 3 cut(s) 204, 250, 355
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 161
NspV TTCGAA 1 cut(s) 287
PfeI GAWTC 2 cut(s) 284, 367
PkrI GCNGC 1 cut(s) 98
PmaCI CACGTG 1 cut(s) 81
PmlI CACGTG 1 cut(s) 81
Ppu21I YACGTR 2 cut(s) 81, 178
PspCI CACGTG 1 cut(s) 81
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 3 cut(s) 204, 250, 355
SduI GDGCHC 1 cut(s) 249
SetI ASST 9 cut(s) 73, 83, 180, 184, 200, 218, 259, 294, 347
SfiI GGCCNNNNNGGCC 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
SnaBI TACGTA 1 cut(s) 178
SspMI CTAG 1 cut(s) 342
TaiI ACGT 2 cut(s) 83, 180
TaqI TCGA 4 cut(s) 249, 287, 324, 361
TfiI GAWTC 2 cut(s) 284, 367
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 249
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.