FvH4_6g16110

Indole-3-acetic acid-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015907
Physical Location & Seq
Reverse (-)
10143549 .. 10144193
645 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16110.t1

Sequence Viewer

Length: 363 bp
ATGATGAAGGGGAAGTTTGCAAGGGTGTGTGCCAATAAGTTGAGGAAGATAGGGAGTAAAGGGAGCGTACCTTCTTCTTCTTCGTGCTGCGAGCAATGCTGTCAATGGGCTCTGTGGCCAAACTCCATGCATGAAGAAAACTCGATCCCAAAAGACGTCCCCAGGGGTCACTTGGTAGTTTATGTAGGTGAAAACCACAAGAGGTTTGTAATCAAACTCACCTTGCTCAATCACCCACTCTTCAAGGCACTCCTGGATCAAGCTCGAGAAGAATACGACTTCAATGCTCACTCGAAACTCTACATACCCTGCGATGAGAACCTCTTCCTTGAAGTTGTTCGATGCGCTAAGCTCTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

9.03

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 35 - 114 3.6e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37030 AT3G53250 AT3G53250
fragaria_vesca FvH4_6g16110
malus_domestica MD04G1095800.v1.1 MD12G1115800.v1.1
prunus_persica Prupe.6G234900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0469951
rosa_laevigata RLG00000024310
rosa_multiflora Rmu_sc0008347.1_g000002
rosa_rugosa Rorug03G0105600
rosa_samantha Rh3AG154600 Rh3BG178700 Rh3CG169300
rosa_wichuraiana Rw3G014570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AclWI GGATC 2 cut(s) 139, 264
AcoI YGGCCR 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 69
AgsI TTSAA 3 cut(s) 244, 283, 332
AjnI CCWGG 2 cut(s) 161, 252
AluBI AGCT 2 cut(s) 263, 352
AluI AGCT 2 cut(s) 263, 352
AlwI GGATC 2 cut(s) 139, 264
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 87
Asp700I GAANNNNTTC 2 cut(s) 323, 336
AspLEI GCGC 1 cut(s) 347
AsuHPI GGTGA 3 cut(s) 200, 211, 224
AvaI CYCGRG 1 cut(s) 264
BalI TGGCCA 1 cut(s) 118
BanII GRGCYC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 2 cut(s) 163, 254
BisI GCNGC 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 163, 254
BmeT110I CYCGRG 1 cut(s) 264
BmrFI CCNGG 2 cut(s) 163, 254
BmsI GCATC 1 cut(s) 332
BpmI CTGGAG 1 cut(s) 340
Bpu1102I GCTNAGC 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 161, 162
Bse3DI GCAATG 1 cut(s) 101
BseBI CCWGG 2 cut(s) 163, 254
BseDI CCNNGG 2 cut(s) 161, 162
BseMI GCAATG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 2 cut(s) 144, 256
Bsp1720I GCTNAGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 118
BspPI GGATC 2 cut(s) 139, 264
BsrDI GCAATG 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 161, 162
BssMI GATC 2 cut(s) 144, 256
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 163, 254
Bst6I CTCTTC 2 cut(s) 245, 329
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 2 cut(s) 147, 259
BstMBI GATC 2 cut(s) 144, 256
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 2 cut(s) 163, 254
BstSCI CCNGG 2 cut(s) 161, 252
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 68
CviAII CATG 2 cut(s) 127, 131
CviJI RGCY 4 cut(s) 110, 118, 263, 352
CviKI_1 RGCY 4 cut(s) 110, 118, 263, 352
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 146, 258
DpnII GATC 2 cut(s) 144, 256
EaeI YGGCCR 1 cut(s) 116
Eam1104I CTCTTC 2 cut(s) 245, 329
EarI CTCTTC 2 cut(s) 245, 329
Eco24I GRGCYC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 161, 252
EcoT22I ATGCAT 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 2 cut(s) 130, 134
FaiI YATR 4 cut(s) 128, 132, 183, 305
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 126, 130
Fnu4HI GCNGC 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 88
GlaI GCGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 1 cut(s) 118
HhaI GCGC 1 cut(s) 347
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 130, 134
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HphI GGTGA 3 cut(s) 200, 211, 224
Hpy188III TCNNGA 2 cut(s) 266, 357
HpyAV CCTTC 1 cut(s) 81
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 20, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 130, 134
HspAI GCGC 1 cut(s) 345
Kzo9I GATC 2 cut(s) 144, 256
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 5 cut(s) 148, 175, 239, 266, 322
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 332
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 146, 258
MboI GATC 2 cut(s) 144, 256
MboII GAAGA 8 cut(s) 58, 66, 69, 72, 146, 232, 281, 316
MhlI GDGCHC 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 118
MluNI TGGCCA 1 cut(s) 118
MnlI CCTC 3 cut(s) 36, 195, 332
Mox20I TGGCCA 1 cut(s) 118
Mph1103I ATGCAT 1 cut(s) 132
MroXI GAANNNNTTC 2 cut(s) 323, 336
MscI TGGCCA 1 cut(s) 118
Msp20I TGGCCA 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 163, 254
MvaI CCWGG 2 cut(s) 163, 254
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 2 cut(s) 144, 256
NlaIII CATG 2 cut(s) 130, 134
NmuCI GTSAC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 264
PasI CCCWGGG 1 cut(s) 162
PdmI GAANNNNTTC 2 cut(s) 323, 336
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 161, 252
PspGI CCWGG 2 cut(s) 161, 252
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 144, 256
ScrFI CCNGG 2 cut(s) 163, 254
SduI GDGCHC 1 cut(s) 112
SetI ASST 8 cut(s) 73, 159, 190, 206, 224, 265, 324, 354
SfaNI GCATC 1 cut(s) 332
Sfr274I CTCGAG 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 161, 252
TaiI ACGT 1 cut(s) 159
TaqI TCGA 4 cut(s) 143, 265, 293, 340
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 20, 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XhoI CTCGAG 1 cut(s) 264
XmnI GAANNNNTTC 2 cut(s) 323, 336
ZraI GACGTC 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.