AT2G38400

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
16083645 .. 16086453
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38400.1

Sequence Viewer

Length: 1434 bp
ATGCAGAGATTCGCGGCGAAAAGATCGGTGCAAAACATTTCCGTCTCTCTATGGCGTCGATGTATCTCATCGACGTCTCAGGCAGCGACAGCTTCCGTTAAGGATTCCGACGAGTTTCAGGCGAGGCTTCCTCCTTTTGCTTACACTCCTCCGCCGTATACTGGTCCTTCCGCCGATGTTATCCTTAGCAAAAGGAAGGAGTTTCTCAGTCCTTCCATGTTCTGTCTCTATCGGAAACCGTTAAACATTGTGGATGGGAAAATGCAGTATCTATTTGATGAGAGTGGTCGGAGATATTTAGATGCATTTGCTGGGATTGCTGTTGTGAATTGTGGACATTGTCATCCAGATGTGGTTGAGCCAGTGATTAATCAAATCAAGAGGCTTCAGCATCCTACTGTTCTTTACCTTAACCATGCCATTGCTGATTTCTCTGAGGCTCTTGCTTCTAAACTTCCCGGTGATCTAAAGGTGGTGTTTTTCACTAACTCAGGGACAGAGGCTAATGAATTGGCGCTTATGATGGCTAAGTTGTATACTGGATGTCAAGATATTGTGGCGGTTCGAAACGGGTATCATGGTAATGCAGCTGCAACTATGGGGGCTACTGGTCAGAGTATGTGGAAGTTTAATGTGGTTCAGAATAGTGTTCATCATGCTTTGAACCCTGATCCTTATAGAGGTGTGTTTGGTTCTGATGGAGAGAAGTATGCAAAGGATTTGCAAGATCTTATTCAATATGGTACGACTGGTCACATTGCCGGTTTTATTTGTGAAGCTATTCAGGGAGTTGGAGGGATCGTGGAACTAGCACCGGGATATTTGTCAGCGGCTTACGATACTGTTAAGAAAGCTGGTGGATTGTTCATTGCGGATGAAGTTCAGTCTGGTTTCGCACGTACTGGTAACTTTTGGGGATTTGAGGCACACAATGTTGTCCCTGACATAGTAACCATGGCAAAGGGAATTGGGAATGGGTTTCCTTTGGGAGCTGTTGTGACAACTCCAGAGATAGCAGGAGTGTTGACTCGCCGTAGCTACTTCAATACATTTGGTGGAAATTCTGTGTCTACTACAGCTGGTCTCGCTGTTCTGAATGTGATTGAGAAAGAGAAGCTTCAGGAAAATGCTGCAATGGTTGGATCCTATCTGAAAGAAAAACTCACACAGCTGAAAGAAAAACACGAGATTATCGGGGATGTCCGGGGAAGAGGACTGATGCTTGGAGTGGAGCTGGTGAGTGATCGCAAGCTTAAGACTCCTGCAACCGCCGAGACTCTGCACATTATGGATCAAATGAAAGAATTGGGTGTGTTGATTGGAAAAGGAGGCTACTTTGGAAATGTCTTTAGAATCACACCACCTCTCTGCTTCACCAAGGACGATGCAGATTTTCTCGTGGAAGCGATGGACTACTCAATGTCGAAGATGTGA

Protein Analysis

477

Amino Acids

51.91

Weight (kDa)

7.16

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 81 - 470 2.1e-97 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 77
AccI GTMKAC 3 cut(s) 158, 536, 1070
AccII CGCG 1 cut(s) 14
AciI CCGC 7 cut(s) 14, 152, 171, 560, 830, 872, 1269
AclWI GGATC 5 cut(s) 665, 806, 1137, 1150, 1299
AcsI RAATTY 1 cut(s) 1060
AcuI CTGAAG 2 cut(s) 371, 1103
AcyI GRCGYC 2 cut(s) 55, 74
AfaI GTAC 2 cut(s) 745, 901
AfiI CCNNNNNNNGG 2 cut(s) 161, 680
AflII CTTAAG 1 cut(s) 1253
AgsI TTSAA 3 cut(s) 664, 737, 1045
Alw26I GTCTC 5 cut(s) 49, 81, 230, 1088, 1268
AlwI GGATC 5 cut(s) 665, 806, 1137, 1150, 1299
ApeKI GCWGC 4 cut(s) 83, 587, 590, 1130
ApoI RAATTY 1 cut(s) 1060
AseI ATTAAT 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 3 cut(s) 459, 816, 1205
AsuHPI GGTGA 3 cut(s) 473, 1249, 1366
AsuII TTCGAA 1 cut(s) 565
AvaII GGWCC 1 cut(s) 164
BamHI GGATCC 1 cut(s) 1142
BauI CACGAG 2 cut(s) 1184, 1397
BbvI GCAGC 4 cut(s) 95, 577, 599, 1117
BccI CCATC 4 cut(s) 248, 517, 692, 1402
BceAI ACGGC 2 cut(s) 139, 1017
BcnI CCSGG 3 cut(s) 459, 816, 1205
BcoDI GTCTC 5 cut(s) 49, 81, 230, 1088, 1268
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 1074
BfoI RGCGCY 1 cut(s) 518
BfrI CTTAAG 1 cut(s) 1253
BglII AGATCT 1 cut(s) 727
BisI GCNGC 6 cut(s) 15, 84, 588, 591, 831, 1131
BlsI GCNGC 6 cut(s) 16, 85, 589, 592, 832, 1132
Bme1390I CCNGG 3 cut(s) 459, 816, 1205
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 1144
BmrFI CCNGG 3 cut(s) 459, 816, 1205
BmsI GCATC 4 cut(s) 292, 400, 1209, 1375
BplI GAGNNNNNCTC 2 cut(s) 115, 147
BpmI CTGGAG 1 cut(s) 990
Bpu10I CCTNAGC 1 cut(s) 185
Bpu14I TTCGAA 1 cut(s) 565
BpuMI CCSGG 3 cut(s) 459, 816, 1205
BsaAI YACGTR 1 cut(s) 899
BsaHI GRCGYC 2 cut(s) 55, 74
BsaI GGTCTC 1 cut(s) 1088
BsaJI CCNNGG 3 cut(s) 954, 1204, 1377
BsaXI ACNNNNNCTCC 4 cut(s) 786, 816, 981, 1011
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 680
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 6 cut(s) 166, 362, 544, 613, 754, 907
Bse3DI GCAATG 4 cut(s) 420, 756, 867, 1140
BseDI CCNNGG 3 cut(s) 954, 1204, 1377
BseGI GGATG 6 cut(s) 259, 343, 391, 548, 880, 1204
BseLI CCNNNNNNNGG 2 cut(s) 161, 680
BseMI GCAATG 4 cut(s) 420, 756, 867, 1140
BseMII CTCAG 4 cut(s) 92, 220, 426, 504
BseNI ACTGG 6 cut(s) 166, 362, 544, 613, 754, 907
BseRI GAGGAG 1 cut(s) 138
BseXI GCAGC 4 cut(s) 95, 577, 599, 1117
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 1265
Bsh1236I CGCG 1 cut(s) 14
BsiSI CCGG 4 cut(s) 459, 762, 815, 1204
BslFI GGGAC 2 cut(s) 508, 923
BslI CCNNNNNNNGG 2 cut(s) 161, 680
BsmAI GTCTC 5 cut(s) 49, 81, 230, 1088, 1268
BsmBI CGTCTC 2 cut(s) 49, 81
BsmFI GGGAC 2 cut(s) 508, 923
Bso31I GGTCTC 1 cut(s) 1088
Bsp119I TTCGAA 1 cut(s) 565
Bsp143I GATC 8 cut(s) 23, 463, 670, 727, 798, 1142, 1243, 1291
Bsp19I CCATGG 1 cut(s) 954
BspACI CCGC 7 cut(s) 14, 152, 171, 560, 830, 872, 1269
BspCNI CTCAG 4 cut(s) 91, 219, 427, 503
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 1144
BspPI GGATC 5 cut(s) 665, 806, 1137, 1150, 1299
BspT104I TTCGAA 1 cut(s) 565
BspTI CTTAAG 1 cut(s) 1253
BspTNI GGTCTC 1 cut(s) 1088
BsrDI GCAATG 4 cut(s) 420, 756, 867, 1140
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 6 cut(s) 166, 362, 544, 613, 754, 907
BssAI RCCGGY 1 cut(s) 761
BssECI CCNNGG 3 cut(s) 954, 1204, 1377
BssMI GATC 8 cut(s) 23, 463, 670, 727, 798, 1142, 1243, 1291
BssNAI GTATAC 2 cut(s) 159, 537
BssNI GRCGYC 2 cut(s) 55, 74
BssSI CACGAG 2 cut(s) 1184, 1397
BssT1I CCWWGG 2 cut(s) 954, 1377
Bst1107I GTATAC 2 cut(s) 159, 537
Bst2BI CACGAG 2 cut(s) 1184, 1397
Bst4CI ACNGT 3 cut(s) 240, 400, 844
Bst6I CTCTTC 1 cut(s) 1204
BstACI GRCGYC 2 cut(s) 55, 74
BstAFI CTTAAG 1 cut(s) 1253
BstBAI YACGTR 1 cut(s) 899
BstBI TTCGAA 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 1250
BstDEI CTNAG 6 cut(s) 78, 185, 206, 435, 490, 528
BstDSI CCRYGG 1 cut(s) 954
BstENI CCTNNNNNAGG 1 cut(s) 678
BstF5I GGATG 6 cut(s) 259, 343, 391, 548, 880, 1204
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 8 cut(s) 26, 466, 673, 730, 801, 1145, 1246, 1294
BstMAI GTCTC 5 cut(s) 49, 81, 230, 1088, 1268
BstMBI GATC 8 cut(s) 23, 463, 670, 727, 798, 1142, 1243, 1291
BstMWI GCNNNNNNNGC 3 cut(s) 89, 317, 1085
BstSCI CCNGG 3 cut(s) 457, 814, 1203
BstSFI CTRYAG 1 cut(s) 1074
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 4 cut(s) 95, 577, 599, 1117
BstX2I RGATCY 2 cut(s) 727, 1142
BstYI RGATCY 2 cut(s) 727, 1142
BstZ17I GTATAC 2 cut(s) 159, 537
BtgI CCRYGG 1 cut(s) 954
BtgZI GCGATG 1 cut(s) 1421
BtsCI GGATG 6 cut(s) 259, 343, 391, 548, 880, 1204
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 1250
CfoI GCGC 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 761
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 744, 900
CviAII CATG 5 cut(s) 217, 416, 578, 656, 955
CviQI GTAC 2 cut(s) 744, 900
DdeI CTNAG 6 cut(s) 78, 185, 206, 435, 490, 528
DpnI GATC 8 cut(s) 25, 465, 672, 729, 800, 1144, 1245, 1293
DpnII GATC 8 cut(s) 23, 463, 670, 727, 798, 1142, 1243, 1291
Eam1104I CTCTTC 1 cut(s) 1204
EarI CTCTTC 1 cut(s) 1204
EciI GGCGGA 2 cut(s) 141, 160
Eco130I CCWWGG 2 cut(s) 954, 1377
Eco31I GGTCTC 1 cut(s) 1088
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 2 cut(s) 371, 1103
EcoNI CCTNNNNNAGG 1 cut(s) 678
EcoT14I CCWWGG 2 cut(s) 954, 1377
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 2 cut(s) 954, 1377
Esp3I CGTCTC 2 cut(s) 49, 81
FaeI CATG 5 cut(s) 220, 419, 581, 659, 958
FalI AAGNNNNNCTT 2 cut(s) 1101, 1133
FaqI GGGAC 2 cut(s) 508, 923
FatI CATG 5 cut(s) 216, 415, 577, 655, 954
FblI GTMKAC 3 cut(s) 158, 536, 1070
Fnu4HI GCNGC 6 cut(s) 15, 84, 588, 591, 831, 1131
FokI GGATG 6 cut(s) 266, 330, 378, 555, 887, 1211
Fsp4HI GCNGC 6 cut(s) 15, 84, 588, 591, 831, 1131
FspBI CTAG 1 cut(s) 809
GlaI GCGC 1 cut(s) 516
GluI GCNGC 6 cut(s) 15, 84, 588, 591, 831, 1131
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 990
HaeII RGCGCY 1 cut(s) 518
HapII CCGG 4 cut(s) 459, 762, 815, 1204
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 517
Hin1I GRCGYC 2 cut(s) 55, 74
Hin1II CATG 5 cut(s) 220, 419, 581, 659, 958
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HindIII AAGCTT 2 cut(s) 1115, 1250
HinfI GANTC 6 cut(s) 9, 104, 1027, 1258, 1276, 1353
HpaII CCGG 4 cut(s) 459, 762, 815, 1204
HphI GGTGA 3 cut(s) 473, 1249, 1366
Hpy166II GTNNAC 5 cut(s) 159, 335, 537, 1026, 1071
Hpy188I TCNGA 9 cut(s) 109, 234, 291, 436, 615, 642, 697, 1095, 1152
Hpy188III TCNNGA 5 cut(s) 347, 379, 548, 1007, 1121
Hpy8I GTNNAC 5 cut(s) 159, 335, 537, 1026, 1071
Hpy99I CGWCG 3 cut(s) 60, 76, 113
HpyAV CCTTC 3 cut(s) 177, 190, 222
HpyCH4III ACNGT 3 cut(s) 240, 400, 844
HpyCH4IV ACGT 2 cut(s) 74, 898
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 317, 1085
HpyF3I CTNAG 6 cut(s) 78, 185, 206, 435, 490, 528
HpySE526I ACGT 2 cut(s) 74, 898
Hsp92I GRCGYC 2 cut(s) 55, 74
Hsp92II CATG 5 cut(s) 220, 419, 581, 659, 958
HspAI GCGC 1 cut(s) 515
Kzo9I GATC 8 cut(s) 23, 463, 670, 727, 798, 1142, 1243, 1291
LmnI GCTCC 2 cut(s) 989, 1231
Lsp1109I GCAGC 4 cut(s) 95, 577, 599, 1117
LweI GCATC 4 cut(s) 292, 400, 1209, 1375
MaeI CTAG 1 cut(s) 809
MaeII ACGT 2 cut(s) 74, 898
MaeIII GTNAC 4 cut(s) 752, 905, 949, 997
MalI GATC 8 cut(s) 25, 465, 672, 729, 800, 1144, 1245, 1293
MboI GATC 8 cut(s) 23, 463, 670, 727, 798, 1142, 1243, 1291
MboII GAAGA 1 cut(s) 1221
MflI RGATCY 2 cut(s) 727, 1142
MluCI AATT 5 cut(s) 328, 509, 966, 1060, 1304
MlyI GAGTC 3 cut(s) 1021, 1252, 1270
MmeI TCCRAC 4 cut(s) 132, 269, 772, 1120
Mph1103I ATGCAT 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 7 cut(s) 99, 242, 369, 411, 630, 846, 1254
MslI CAYNNNNRTG 2 cut(s) 348, 582
MspA1I CMGCKG 4 cut(s) 590, 830, 1079, 1171
MspCI CTTAAG 1 cut(s) 1253
MspI CCGG 4 cut(s) 459, 762, 815, 1204
MspR9I CCNGG 3 cut(s) 459, 816, 1205
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 89, 317, 1085
NciI CCSGG 3 cut(s) 459, 816, 1205
NcoI CCATGG 1 cut(s) 954
NdeII GATC 8 cut(s) 23, 463, 670, 727, 798, 1142, 1243, 1291
NlaIII CATG 5 cut(s) 220, 419, 581, 659, 958
NlaIV GGNNCC 1 cut(s) 1144
NmeAIII GCCGAG 1 cut(s) 1297
NmuCI GTSAC 2 cut(s) 752, 997
NsiI ATGCAT 1 cut(s) 307
NspV TTCGAA 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 3 cut(s) 9, 104, 1353
PflFI GACNNNGTC 1 cut(s) 339
PkrI GCNGC 6 cut(s) 16, 85, 589, 592, 832, 1132
PleI GAGTC 3 cut(s) 1021, 1252, 1270
PpsI GAGTC 3 cut(s) 1021, 1252, 1270
Ppu21I YACGTR 1 cut(s) 899
PshBI ATTAAT 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 1144
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 2 cut(s) 727, 1142
PsyI GACNNNGTC 1 cut(s) 339
PvuII CAGCTG 3 cut(s) 590, 1079, 1171
RsaI GTAC 2 cut(s) 745, 901
RsaNI GTAC 2 cut(s) 744, 900
RseI CAYNNNNRTG 2 cut(s) 348, 582
SaqAI TTAA 7 cut(s) 99, 242, 369, 411, 630, 846, 1254
SatI GCNGC 6 cut(s) 15, 84, 588, 591, 831, 1131
Sau3AI GATC 8 cut(s) 23, 463, 670, 727, 798, 1142, 1243, 1291
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 3 cut(s) 1021, 1252, 1270
ScrFI CCNGG 3 cut(s) 459, 816, 1205
SfaNI GCATC 4 cut(s) 292, 400, 1209, 1375
SfcI CTRYAG 1 cut(s) 1074
SfuI TTCGAA 1 cut(s) 565
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 348, 582
SmlI CTYRAG 1 cut(s) 1253
SmoI CTYRAG 1 cut(s) 1253
Sse9I AATT 5 cut(s) 328, 509, 966, 1060, 1304
SsiI CCGC 7 cut(s) 14, 152, 171, 560, 830, 872, 1269
SspMI CTAG 1 cut(s) 809
StyD4I CCNGG 3 cut(s) 457, 814, 1203
StyI CCWWGG 2 cut(s) 954, 1377
TaaI ACNGT 3 cut(s) 240, 400, 844
TaiI ACGT 2 cut(s) 77, 901
TaqI TCGA 4 cut(s) 58, 71, 565, 1424
TasI AATT 5 cut(s) 328, 509, 966, 1060, 1304
TauI GCSGC 2 cut(s) 17, 833
TfiI GAWTC 3 cut(s) 9, 104, 1353
Tru1I TTAA 7 cut(s) 99, 242, 369, 411, 630, 846, 1254
Tru9I TTAA 7 cut(s) 99, 242, 369, 411, 630, 846, 1254
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 752, 997
TseI GCWGC 4 cut(s) 83, 587, 590, 1130
Tsp45I GTSAC 2 cut(s) 752, 997
TspDTI ATGAA 5 cut(s) 522, 641, 856, 891, 1313
TspGWI ACGGA 2 cut(s) 31, 85
TspRI CASTG 1 cut(s) 369
Tth111I GACNNNGTC 1 cut(s) 339
Vha464I CTTAAG 1 cut(s) 1253
VpaK11BI GGWCC 1 cut(s) 164
VspI ATTAAT 1 cut(s) 369
XagI CCTNNNNNAGG 1 cut(s) 678
XapI RAATTY 1 cut(s) 1060
XmiI GTMKAC 3 cut(s) 158, 536, 1070
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 1 cut(s) 809
ZraI GACGTC 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.