RLG00000024939

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
40519709 .. 40525307
5599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024939

Sequence Viewer

Length: 1278 bp
ATGCAGGGATTTATAGGGAGGAGGGTAATCTCGGGAACGAGACAATTATCTAATCTGCGACCATGGCAACGCTGTTCTCTCTCTCAGGTGGCTCAGAGCGAGGATGCCGACAATGGCGTCCATATTCCCAAAATGCCCCCGTTCGACTACTCTCCTCCGCCGTACACCGGCCCCACCGCAGAGGAGATCTTGGCACAGAGGAAAGAGTTCCTCAGCCCCTCCATGTTCTACTTCTACAACAAACCCCTGAATATTGTCGACGGGAAGATGCAGTACTTGTTCGACGAGAATGGTCGGAGGTATTTGGACGGTTTCGGAGGGATTGCTACGGTGAGCTGCGGCCACTGCCACCCTGATGTGGTGGAGGCCATAGTGAACCAAACCAAGAAACTACAACACTCGACGATTCTTTACCTGAATCATGCAATCGGCGATTTCGCTCAGGCACTGGCTTCCAAGTTGCCCGCCAATCTCAAGGTAGTCTTCTTCACTAATTCAGGGACGGAAGCAAACGAGTTGGCGATGTTAATAGCGAGGTTGTACACTGGCTGCCATGACATAATCTCTTTGAGAAACGCATATCATGGCAACGCTGCTGGCACTATGGGCGCCACTGCCCAGGCCAACTGGAAATTTAACGTCATTCAGAGTGGAGTTCATCATGCCATGAATCCAGACCCATACAGAGGTGTATTTGGTTCAGATGGTGAGAAGTATGCCAAAGATGTCCAAGATCTCATTGACTTTGGAACTTCTGGCCATGTTGCTGCCTTTATATCTGAAGCCATACAGGGAGTAGGGGGAATTGTAGAATTGGCCCCGGGTTATTTGCCAGCCGTTTATAATAGTGTAAAAAAAGCAGGAGGCCTTTTCATCGCTGATGAGGTCCAGTCTGGTTTTGCTCGCACAGGAAGCAACTTCTGGGGTTTTGAGGGCCATGGTCTTGTGCCTGACATTGTGACAATGGCCAAGGGCATTGGAAATGGCATTCCCCTTGGTGCTGTGGTAACCACTCCTGAGGTTGCAGAGGTCTTGACCCGCCGCAATTACTTTAACACCTTTGGTGGCAATCCTGTATGCACAGCTGCAGGACTGGCTGTTCTGAAAGTGATAGAGAAAGAAGGACTTCAAGAAAATGCATTCGTTGTGGGCTCTTATCTGAAAGAAAGACTCACTGCCCTTAAGGATAAATATGAACGTAAACTCTCTCGCTCTTTTTTTGTTTATGCATTTAAGCATTCTGCTGGTTGTAGTGCTGTTTATCTCAATTTTCCATGA

Protein Analysis

426

Amino Acids

46.23

Weight (kDa)

7.66

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 83 - 399 8.5e-78 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
AasI GACNNNNNNGTC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 608
AccI GTMKAC 1 cut(s) 258
AciI CCGC 6 cut(s) 158, 177, 339, 465, 1039, 1042
AcoI YGGCCR 3 cut(s) 340, 757, 966
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 801
AcyI GRCGYC 2 cut(s) 117, 609
AfaI GTAC 3 cut(s) 164, 275, 542
AfiI CCNNNNNNNGG 3 cut(s) 167, 358, 686
AflII CTTAAG 1 cut(s) 1181
AgsI TTSAA 1 cut(s) 1130
AjnI CCWGG 1 cut(s) 618
AloI GAACNNNNNNTCC 2 cut(s) 1083, 1115
AluBI AGCT 2 cut(s) 336, 1085
AluI AGCT 2 cut(s) 336, 1085
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 448
Ama87I CYCGRG 2 cut(s) 31, 820
AoxI GGCC 9 cut(s) 169, 340, 366, 621, 757, 816, 865, 934, 966
ApeKI GCWGC 5 cut(s) 336, 549, 593, 767, 1085
ApoI RAATTY 1 cut(s) 632
Asp700I GAANNNNTTC 2 cut(s) 206, 1125
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 4 cut(s) 170, 817, 886, 934
AsuC2I CCSGG 2 cut(s) 821, 822
AsuHPI GGTGA 2 cut(s) 343, 719
AvaI CYCGRG 2 cut(s) 31, 820
AvaII GGWCC 1 cut(s) 886
AxyI CCTNAGG 1 cut(s) 1017
BalI TGGCCA 2 cut(s) 759, 968
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 1 cut(s) 1154
BarI GAAGNNNNNNTAC 2 cut(s) 257, 289
BbsI GAAGAC 1 cut(s) 475
BbvCI CCTCAGC 1 cut(s) 212
BbvI GCAGC 5 cut(s) 323, 536, 580, 754, 1072
BccI CCATC 1 cut(s) 698
BceAI ACGGC 2 cut(s) 145, 821
BciT130I CCWGG 1 cut(s) 620
BcnI CCSGG 2 cut(s) 821, 822
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 1086
BfoI RGCGCY 1 cut(s) 612
BfrI CTTAAG 1 cut(s) 1181
BglII AGATCT 2 cut(s) 186, 733
BisI GCNGC 7 cut(s) 337, 340, 550, 594, 768, 1042, 1086
BlsI GCNGC 7 cut(s) 338, 341, 551, 595, 769, 1043, 1087
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 3 cut(s) 620, 821, 822
Bme18I GGWCC 1 cut(s) 886
BmeT110I CYCGRG 2 cut(s) 31, 820
BmgT120I GGNCC 4 cut(s) 170, 817, 886, 934
BmiI GGNNCC 3 cut(s) 172, 610, 819
BmrFI CCNGG 3 cut(s) 620, 821, 822
BmsI GCATC 2 cut(s) 94, 258
BpiI GAAGAC 1 cut(s) 475
Bpu10I CCTNAGC 2 cut(s) 212, 441
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 821, 822
BsaHI GRCGYC 2 cut(s) 117, 609
BsaJI CCNNGG 7 cut(s) 62, 618, 819, 820, 937, 969, 994
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 358, 686
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 5 cut(s) 453, 550, 632, 889, 1098
Bse21I CCTNAGG 1 cut(s) 1017
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 7 cut(s) 62, 618, 819, 820, 937, 969, 994
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 3 cut(s) 167, 358, 686
BseMII CTCAG 5 cut(s) 98, 107, 226, 455, 1008
BseNI ACTGG 5 cut(s) 453, 550, 632, 889, 1098
BseRI GAGGAG 3 cut(s) 34, 144, 197
BseXI GCAGC 5 cut(s) 323, 536, 580, 754, 1072
BshFI GGCC 9 cut(s) 171, 342, 368, 623, 759, 818, 867, 936, 968
BshNI GGYRCC 1 cut(s) 608
BsiHKCI CYCGRG 2 cut(s) 31, 820
BsiSI CCGG 2 cut(s) 168, 821
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 3 cut(s) 167, 358, 686
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 514
BsmI GAATGC 3 cut(s) 987, 1139, 1237
BsnI GGCC 9 cut(s) 171, 342, 368, 623, 759, 818, 867, 936, 968
BsoBI CYCGRG 2 cut(s) 31, 820
Bsp1286I GDGCHC 1 cut(s) 1154
Bsp1407I TGTACA 1 cut(s) 540
Bsp143I GATC 2 cut(s) 186, 733
Bsp19I CCATGG 2 cut(s) 62, 937
BspACI CCGC 6 cut(s) 158, 177, 339, 465, 1039, 1042
BspANI GGCC 9 cut(s) 171, 342, 368, 623, 759, 818, 867, 936, 968
BspCNI CTCAG 5 cut(s) 97, 106, 225, 454, 1009
BspLI GGNNCC 3 cut(s) 172, 610, 819
BspMAI CTGCAG 1 cut(s) 1090
BspT107I GGYRCC 1 cut(s) 608
BspTI CTTAAG 1 cut(s) 1181
BsrFI RCCGGY 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 540
BsrI ACTGG 5 cut(s) 453, 550, 632, 889, 1098
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 7 cut(s) 62, 618, 819, 820, 937, 969, 994
BssMI GATC 2 cut(s) 186, 733
BssNI GRCGYC 2 cut(s) 117, 609
BssT1I CCWWGG 4 cut(s) 62, 937, 969, 994
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 2 cut(s) 311, 331
BstACI GRCGYC 2 cut(s) 117, 609
BstAFI CTTAAG 1 cut(s) 1181
BstAUI TGTACA 1 cut(s) 540
BstC8I GCNNGC 4 cut(s) 465, 598, 834, 904
BstDEI CTNAG 5 cut(s) 84, 93, 212, 441, 1017
BstDSI CCRYGG 2 cut(s) 62, 937
BstEII GGTNACC 1 cut(s) 1006
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 2 cut(s) 189, 736
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 186, 733
BstMWI GCNNNNNNNGC 5 cut(s) 64, 345, 606, 912, 1094
BstNI CCWGG 1 cut(s) 620
BstPI GGTNACC 1 cut(s) 1006
BstSCI CCNGG 3 cut(s) 618, 819, 820
BstSFI CTRYAG 1 cut(s) 1086
BstV1I GCAGC 5 cut(s) 323, 536, 580, 754, 1072
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 2 cut(s) 186, 733
BstYI RGATCY 2 cut(s) 186, 733
Bsu36I CCTNAGG 1 cut(s) 1017
BsuRI GGCC 9 cut(s) 171, 342, 368, 623, 759, 818, 867, 936, 968
BtgI CCRYGG 2 cut(s) 62, 937
BtgZI GCGATG 2 cut(s) 536, 859
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 3 cut(s) 343, 612, 1173
BtsIMutI CAGTG 5 cut(s) 343, 446, 543, 612, 1173
Cac8I GCNNGC 4 cut(s) 465, 598, 834, 904
CaiI CAGNNNCTG 1 cut(s) 448
CfoI GCGC 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 4 cut(s) 170, 817, 886, 934
Cfr9I CCCGGG 1 cut(s) 820
CseI GACGC 1 cut(s) 106
Csp6I GTAC 3 cut(s) 163, 274, 541
CviQI GTAC 3 cut(s) 163, 274, 541
DdeI CTNAG 5 cut(s) 84, 93, 212, 441, 1017
DinI GGCGCC 1 cut(s) 610
DpnI GATC 2 cut(s) 188, 735
DpnII GATC 2 cut(s) 186, 733
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 3 cut(s) 340, 757, 966
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 4 cut(s) 62, 937, 969, 994
Eco147I AGGCCT 1 cut(s) 867
Eco24I GRGCYC 1 cut(s) 1154
Eco47I GGWCC 1 cut(s) 886
Eco57I CTGAAG 1 cut(s) 801
Eco81I CCTNAGG 1 cut(s) 1017
Eco88I CYCGRG 2 cut(s) 31, 820
Eco91I GGTNACC 1 cut(s) 1006
EcoO65I GGTNACC 1 cut(s) 1006
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 4 cut(s) 62, 937, 969, 994
EcoT22I ATGCAT 2 cut(s) 1141, 1231
EcoT38I GRGCYC 1 cut(s) 1154
EgeI GGCGCC 1 cut(s) 610
EheI GGCGCC 1 cut(s) 610
ErhI CCWWGG 4 cut(s) 62, 937, 969, 994
FalI AAGNNNNNCTT 4 cut(s) 467, 499, 1110, 1142
FaqI GGGAC 1 cut(s) 514
FauI CCCGC 2 cut(s) 472, 1046
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 7 cut(s) 337, 340, 550, 594, 768, 1042, 1086
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 1154
Fsp4HI GCNGC 7 cut(s) 337, 340, 550, 594, 768, 1042, 1086
GlaI GCGC 1 cut(s) 610
GluI GCNGC 7 cut(s) 337, 340, 550, 594, 768, 1042, 1086
HaeII RGCGCY 1 cut(s) 612
HaeIII GGCC 9 cut(s) 171, 342, 368, 623, 759, 818, 867, 936, 968
HapII CCGG 2 cut(s) 168, 821
HgaI GACGC 1 cut(s) 106
HhaI GCGC 1 cut(s) 611
Hin1I GRCGYC 2 cut(s) 117, 609
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 406, 418, 670, 1170
HpaII CCGG 2 cut(s) 168, 821
HphI GGTGA 2 cut(s) 343, 719
Hpy166II GTNNAC 5 cut(s) 165, 259, 376, 543, 1202
Hpy188I TCNGA 8 cut(s) 96, 297, 317, 648, 703, 781, 1104, 1161
Hpy188III TCNNGA 5 cut(s) 33, 674, 1016, 1033, 1130
Hpy8I GTNNAC 5 cut(s) 165, 259, 376, 543, 1202
Hpy99I CGWCG 3 cut(s) 263, 287, 406
HpyAV CCTTC 1 cut(s) 1115
HpyCH4III ACNGT 2 cut(s) 311, 331
HpyCH4IV ACGT 2 cut(s) 639, 1198
HpyCH4V TGCA 8 cut(s) 4, 271, 425, 1025, 1080, 1088, 1139, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 345, 606, 912, 1094
HpyF3I CTNAG 5 cut(s) 84, 93, 212, 441, 1017
HpySE526I ACGT 2 cut(s) 639, 1198
Hsp92I GRCGYC 2 cut(s) 117, 609
HspAI GCGC 1 cut(s) 609
KasI GGCGCC 1 cut(s) 608
Kzo9I GATC 2 cut(s) 186, 733
Lsp1109I GCAGC 5 cut(s) 323, 536, 580, 754, 1072
LweI GCATC 2 cut(s) 94, 258
MaeII ACGT 2 cut(s) 639, 1198
MaeIII GTNAC 2 cut(s) 958, 1006
MalI GATC 2 cut(s) 188, 735
MboI GATC 2 cut(s) 186, 733
MboII GAAGA 3 cut(s) 277, 475, 478
MflI RGATCY 2 cut(s) 186, 733
MhlI GDGCHC 1 cut(s) 1154
MlsI TGGCCA 2 cut(s) 759, 968
MluCI AATT 7 cut(s) 44, 493, 632, 804, 812, 1045, 1267
MluNI TGGCCA 2 cut(s) 759, 968
Mly113I GGCGCC 1 cut(s) 609
MlyI GAGTC 1 cut(s) 1164
MmeI TCCRAC 1 cut(s) 275
Mox20I TGGCCA 2 cut(s) 759, 968
Mph1103I ATGCAT 2 cut(s) 1141, 1231
MroXI GAANNNNTTC 2 cut(s) 206, 1125
MscI TGGCCA 2 cut(s) 759, 968
MseI TTAA 5 cut(s) 527, 636, 1053, 1182, 1233
MslI CAYNNNNRTG 1 cut(s) 354
Msp20I TGGCCA 2 cut(s) 759, 968
MspA1I CMGCKG 1 cut(s) 1085
MspCI CTTAAG 1 cut(s) 1181
MspI CCGG 2 cut(s) 168, 821
MspR9I CCNGG 3 cut(s) 620, 821, 822
Mva1269I GAATGC 3 cut(s) 987, 1139, 1237
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 5 cut(s) 64, 345, 606, 912, 1094
NarI GGCGCC 1 cut(s) 609
NciI CCSGG 2 cut(s) 821, 822
NcoI CCATGG 2 cut(s) 62, 937
NdeII GATC 2 cut(s) 186, 733
NlaIV GGNNCC 3 cut(s) 172, 610, 819
NmuCI GTSAC 1 cut(s) 958
NsiI ATGCAT 2 cut(s) 1141, 1231
PceI AGGCCT 1 cut(s) 867
PctI GAATGC 3 cut(s) 987, 1139, 1237
PdmI GAANNNNTTC 2 cut(s) 206, 1125
PfeI GAWTC 3 cut(s) 406, 418, 670
PkrI GCNGC 7 cut(s) 338, 341, 551, 595, 769, 1043, 1087
PleI GAGTC 1 cut(s) 1164
PluTI GGCGCC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 1164
PsiI TTATAA 1 cut(s) 843
Psp6I CCWGG 1 cut(s) 618
PspEI GGTNACC 1 cut(s) 1006
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 3 cut(s) 172, 610, 819
PspPI GGNCC 4 cut(s) 170, 817, 886, 934
PstI CTGCAG 1 cut(s) 1090
PstNI CAGNNNCTG 1 cut(s) 448
PsuI RGATCY 2 cut(s) 186, 733
PvuII CAGCTG 1 cut(s) 1085
RsaI GTAC 3 cut(s) 164, 275, 542
RsaNI GTAC 3 cut(s) 163, 274, 541
RseI CAYNNNNRTG 1 cut(s) 354
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 5 cut(s) 527, 636, 1053, 1182, 1233
SatI GCNGC 7 cut(s) 337, 340, 550, 594, 768, 1042, 1086
Sau3AI GATC 2 cut(s) 186, 733
Sau96I GGNCC 4 cut(s) 170, 817, 886, 934
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 1 cut(s) 1164
ScrFI CCNGG 3 cut(s) 620, 821, 822
SduI GDGCHC 1 cut(s) 1154
SfaNI GCATC 2 cut(s) 94, 258
SfcI CTRYAG 1 cut(s) 1086
SfoI GGCGCC 1 cut(s) 610
SinI GGWCC 1 cut(s) 886
SmaI CCCGGG 1 cut(s) 822
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 2 cut(s) 473, 1181
SmoI CTYRAG 2 cut(s) 473, 1181
Sse9I AATT 7 cut(s) 44, 493, 632, 804, 812, 1045, 1267
SseBI AGGCCT 1 cut(s) 867
SsiI CCGC 6 cut(s) 158, 177, 339, 465, 1039, 1042
SspDI GGCGCC 1 cut(s) 608
SspI AATATT 1 cut(s) 253
StuI AGGCCT 1 cut(s) 867
StyD4I CCNGG 3 cut(s) 618, 819, 820
StyI CCWWGG 4 cut(s) 62, 937, 969, 994
TaaI ACNGT 2 cut(s) 311, 331
TaiI ACGT 2 cut(s) 642, 1201
TaqI TCGA 4 cut(s) 144, 258, 282, 401
TasI AATT 7 cut(s) 44, 493, 632, 804, 812, 1045, 1267
TatI WGTACW 2 cut(s) 273, 540
TauI GCSGC 2 cut(s) 342, 1044
TfiI GAWTC 3 cut(s) 406, 418, 670
Tru1I TTAA 5 cut(s) 527, 636, 1053, 1182, 1233
Tru9I TTAA 5 cut(s) 527, 636, 1053, 1182, 1233
TscAI CASTG 5 cut(s) 350, 453, 550, 619, 1180
TseFI GTSAC 1 cut(s) 958
TseI GCWGC 5 cut(s) 336, 549, 593, 767, 1085
Tsp45I GTSAC 1 cut(s) 958
TspDTI ATGAA 4 cut(s) 647, 683, 862, 1209
TspGWI ACGGA 1 cut(s) 518
TspMI CCCGGG 1 cut(s) 820
TspRI CASTG 5 cut(s) 350, 453, 550, 619, 1180
Vha464I CTTAAG 1 cut(s) 1181
VpaK11BI GGWCC 1 cut(s) 886
XapI RAATTY 1 cut(s) 632
XmaI CCCGGG 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 2 cut(s) 206, 1125
ZrmI AGTACT 1 cut(s) 275
Zsp2I ATGCAT 2 cut(s) 1141, 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.