Prupe.6G288600_v2.0.a1

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
26685340 .. 26689817
4478 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G288600.2

Sequence Viewer

Length: 1434 bp
ATGCAGGGATTAATAGGGAGAAGGGTATTATCTGGAACAGCACAATCCCTGCTAAGGCAGCGCTGCTTCTCTCAGGTGGCCCAAAGCGAAGTTCTCCCAGACAATGGCGTCGCTACTCCGAAAATGCCCCTCTTCGATTACACCCCTCCTCCCTACACCGGCCCCACCGCCGACGAGATCTTGGCCCAGCGCAAGGAGTATCTCAGCCCTTCGATGTTCTACTTCTACAACAAACCACTAAACATAGTGGACGGGAAGAGGCAGTACTTGTTCGACGAAAGCGGGCGGAGGTATTTGGACGGTTTCGGAGGGATTGCTACGGTGAGCTGCGGACACTGCCACCCCGATGTGGTGGAGGCCATAGTTAACCAAACCAAGCGCATCCAACACTCCACCATCCTCTACCTCAATCACGCCATCGGCGATTTCGCTCAGGCGCTCGCCTCCAAGTTGCCCGCCAATCTCAAGGTGGTGTTTTTTACAAACTCGGGGACGGAAGCGAACGAGTTGGCGATGTTGATAGCGAGGTTGTACACGGGGAGCCATGACATTATCTCGTTGAGAAACGCTTATCATGGCAACGCAGCTGGCACCATGGGGGCCACCGCTCAGGGCAACTGGAAATTCAATGTCATCCAGAGCGGAGTTCATCATGCCGTAAACCCGGACCCATACAGAGGAGTTTTTGGTGCAGATGGAGAGAAGTATGCCAATGATGTTCAAGATCTCATAGACTTTGGAACCTCAGGTCATGTTGCTGGTTTTATGTGTGAAGCCATACAGGGAGTAGGTGGAATTGTAGAATTGGCTCAAGGTTACTTGCCAGCCGTTTATAATAGTGTGAAGAAAGCAGGAGGCCTTTTCATTGCTGATGAGGTCCAGTGTGGTTTTGCTCGCACAGGAAGCAACTTCTGGGGATTTGAGGGCCATGGTGTTGTGCCTGACATTGTAACAATGGCCAAGGGTATTGGAAATGGCATTCCTCTTGGTGCTGTTGTAACCACTCCTGAGGTTGCAGAGGTCCTGACTCGCCGCAATTACTTCAACACCTTCGGTGGGAATCCAGTATGTACAGCCGCGGGACTTGCTGTTCTAAAAGTGATTGAGAAAGAAAAGCTTCAGGATAATGCTTTCGTCGTGGGATCATATCTGAAAGAAAGACTCAATGCCCTCAAGGATAAATATGAACTTATTGGGGATGTGAGGGGAAGGGGATTAATGCTTGGAGTTGAGCTAGTCACTGATCGTGAGCTGAAGACACCTGCAAAGGCTGAAACTGTACATATAATGGAAAAGATGAAAGATTTGGGAGTGTTGATTGGCAAAGGCGGCTTCTATGGAAATGTTTTCAGAATCACACCTCCTCTGTGCTTCACCAAGGATGATGCAGATTTTCTTGTGGATGCAATGGACTACACAATATCTAAGATTTGA

Protein Analysis

478

Amino Acids

51.74

Weight (kDa)

6.43

Isoelectric Point (pI)

26.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 834
AarI CACCTGC 1 cut(s) 1270
AasI GACNNNNNNGTC 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 1270
AccB1I GGYRCC 1 cut(s) 590
AccB7I CCANNNNNTGG 1 cut(s) 104
AccBSI CCGCTC 2 cut(s) 608, 642
AccII CGCG 1 cut(s) 1079
AclWI GGATC 1 cut(s) 1150
AcoI YGGCCR 1 cut(s) 957
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 2 cut(s) 1103, 1274
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 4 cut(s) 266, 533, 1072, 1281
AfeI AGCGCT 1 cut(s) 62
AfiI CCNNNNNNNGG 7 cut(s) 54, 104, 158, 193, 349, 677, 1056
AgsI TTSAA 3 cut(s) 628, 722, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AloI GAACNNNNNNTCC 2 cut(s) 1074, 1106
AluBI AGCT 5 cut(s) 327, 587, 1117, 1234, 1252
AluI AGCT 5 cut(s) 327, 587, 1117, 1234, 1252
AlwI GGATC 1 cut(s) 1150
Ama87I CYCGRG 1 cut(s) 487
Aor51HI AGCGCT 1 cut(s) 62
AoxI GGCC 8 cut(s) 78, 160, 183, 357, 600, 856, 925, 957
ApeKI GCWGC 4 cut(s) 58, 63, 327, 584
ApoI RAATTY 1 cut(s) 623
AseI ATTAAT 2 cut(s) 11, 1217
Asp700I GAANNNNTTC 1 cut(s) 1116
AspLEI GCGC 4 cut(s) 63, 192, 381, 439
AspS9I GGNCC 8 cut(s) 79, 161, 184, 600, 667, 877, 925, 1021
AsuC2I CCSGG 1 cut(s) 665
AsuHPI GGTGA 2 cut(s) 334, 1366
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 3 cut(s) 667, 877, 1021
AxyI CCTNAGG 2 cut(s) 745, 1008
BalI TGGCCA 1 cut(s) 959
BanI GGYRCC 1 cut(s) 590
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BbsI GAAGAC 1 cut(s) 1262
BbvI GCAGC 4 cut(s) 50, 70, 314, 596
BccI CCATC 3 cut(s) 404, 425, 689
BceAI ACGGC 2 cut(s) 641, 812
BcnI CCSGG 1 cut(s) 665
BfaI CTAG 1 cut(s) 1235
BfoI RGCGCY 2 cut(s) 64, 440
BfuAI ACCTGC 1 cut(s) 1270
BglII AGATCT 2 cut(s) 177, 724
BisI GCNGC 7 cut(s) 59, 64, 328, 585, 1033, 1077, 1330
BlsI GCNGC 7 cut(s) 60, 65, 329, 586, 1034, 1078, 1331
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 665
Bme18I GGWCC 3 cut(s) 667, 877, 1021
BmeT110I CYCGRG 1 cut(s) 487
BmgT120I GGNCC 8 cut(s) 79, 161, 184, 600, 667, 877, 925, 1021
BmiI GGNNCC 6 cut(s) 163, 542, 592, 601, 669, 742
BmrFI CCNGG 1 cut(s) 665
BmsI GCATC 3 cut(s) 390, 1375, 1393
BpiI GAAGAC 1 cut(s) 1262
Bpu10I CCTNAGC 3 cut(s) 53, 432, 609
BpuEI CTTGAG 3 cut(s) 449, 795, 1157
BpuMI CCSGG 1 cut(s) 665
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 5 cut(s) 594, 928, 960, 1077, 1377
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 7 cut(s) 54, 104, 158, 193, 349, 677, 1056
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 623, 880, 1064
Bse21I CCTNAGG 2 cut(s) 745, 1008
Bse3DI GCAATG 2 cut(s) 864, 1413
BseDI CCNNGG 5 cut(s) 594, 928, 960, 1077, 1377
BseGI GGATG 6 cut(s) 381, 396, 633, 1204, 1387, 1408
BseLI CCNNNNNNNGG 7 cut(s) 54, 104, 158, 193, 349, 677, 1056
BseMI GCAATG 2 cut(s) 864, 1413
BseMII CTCAG 6 cut(s) 86, 217, 446, 623, 759, 999
BseNI ACTGG 3 cut(s) 623, 880, 1064
BseRI GAGGAG 3 cut(s) 138, 693, 1353
BseXI GCAGC 4 cut(s) 50, 70, 314, 596
BseYI CCCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 1 cut(s) 1079
BshFI GGCC 8 cut(s) 80, 162, 185, 359, 602, 858, 927, 959
BshNI GGYRCC 1 cut(s) 590
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 2 cut(s) 159, 665
BslFI GGGAC 2 cut(s) 505, 1095
BslI CCNNNNNNNGG 7 cut(s) 54, 104, 158, 193, 349, 677, 1056
BsmFI GGGAC 2 cut(s) 505, 1095
BsmI GAATGC 1 cut(s) 978
BsnI GGCC 8 cut(s) 80, 162, 185, 359, 602, 858, 927, 959
BsoBI CYCGRG 1 cut(s) 487
Bsp1407I TGTACA 3 cut(s) 531, 1070, 1279
Bsp143I GATC 4 cut(s) 177, 724, 1142, 1243
Bsp19I CCATGG 2 cut(s) 594, 928
BspANI GGCC 8 cut(s) 80, 162, 185, 359, 602, 858, 927, 959
BspCNI CTCAG 6 cut(s) 85, 216, 445, 622, 758, 1000
BspFNI CGCG 1 cut(s) 1079
BspLI GGNNCC 6 cut(s) 163, 542, 592, 601, 669, 742
BspMI ACCTGC 1 cut(s) 1270
BspPI GGATC 1 cut(s) 1150
BspT107I GGYRCC 1 cut(s) 590
BsrBI CCGCTC 2 cut(s) 608, 642
BsrDI GCAATG 2 cut(s) 864, 1413
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 3 cut(s) 531, 1070, 1279
BsrI ACTGG 3 cut(s) 623, 880, 1064
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 5 cut(s) 594, 928, 960, 1077, 1377
BssMI GATC 4 cut(s) 177, 724, 1142, 1243
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 4 cut(s) 594, 928, 960, 1377
Bst4CI ACNGT 3 cut(s) 302, 322, 1279
Bst6I CTCTTC 2 cut(s) 137, 251
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 3 cut(s) 531, 1070, 1279
BstC8I GCNNGC 6 cut(s) 284, 441, 456, 589, 825, 895
BstDEI CTNAG 8 cut(s) 53, 72, 203, 432, 609, 745, 1008, 1425
BstDSI CCRYGG 3 cut(s) 594, 928, 1077
BstF5I GGATG 6 cut(s) 381, 396, 633, 1204, 1387, 1408
BstFNI CGCG 1 cut(s) 1079
BstH2I RGCGCY 2 cut(s) 64, 440
BstHHI GCGC 4 cut(s) 63, 192, 381, 439
BstKTI GATC 4 cut(s) 180, 727, 1145, 1246
BstMBI GATC 4 cut(s) 177, 724, 1142, 1243
BstMWI GCNNNNNNNGC 5 cut(s) 58, 336, 903, 1085, 1329
BstSCI CCNGG 1 cut(s) 663
BstUI CGCG 1 cut(s) 1079
BstV1I GCAGC 4 cut(s) 50, 70, 314, 596
BstV2I GAAGAC 1 cut(s) 1262
BstX2I RGATCY 2 cut(s) 177, 724
BstYI RGATCY 2 cut(s) 177, 724
Bsu36I CCTNAGG 2 cut(s) 745, 1008
BsuRI GGCC 8 cut(s) 80, 162, 185, 359, 602, 858, 927, 959
BtgI CCRYGG 3 cut(s) 594, 928, 1077
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 6 cut(s) 381, 396, 633, 1204, 1387, 1408
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 3 cut(s) 334, 887, 1239
BveI ACCTGC 1 cut(s) 1270
Cac8I GCNNGC 6 cut(s) 284, 441, 456, 589, 825, 895
CfoI GCGC 4 cut(s) 63, 192, 381, 439
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 8 cut(s) 79, 161, 184, 600, 667, 877, 925, 1021
Cfr42I CCGCGG 1 cut(s) 1080
CseI GACGC 1 cut(s) 97
Csp6I GTAC 4 cut(s) 265, 532, 1071, 1280
CviAII CATG 6 cut(s) 545, 575, 595, 653, 752, 929
CviQI GTAC 4 cut(s) 265, 532, 1071, 1280
DdeI CTNAG 8 cut(s) 53, 72, 203, 432, 609, 745, 1008, 1425
DpnI GATC 4 cut(s) 179, 726, 1144, 1245
DpnII GATC 4 cut(s) 177, 724, 1142, 1243
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 957
Eam1104I CTCTTC 2 cut(s) 137, 251
EarI CTCTTC 2 cut(s) 137, 251
EciI GGCGGA 1 cut(s) 301
Eco130I CCWWGG 4 cut(s) 594, 928, 960, 1377
Eco147I AGGCCT 1 cut(s) 858
Eco47I GGWCC 3 cut(s) 667, 877, 1021
Eco47III AGCGCT 1 cut(s) 62
Eco57I CTGAAG 2 cut(s) 1103, 1274
Eco81I CCTNAGG 2 cut(s) 745, 1008
Eco88I CYCGRG 1 cut(s) 487
EcoO109I RGGNCCY 1 cut(s) 1021
EcoT14I CCWWGG 4 cut(s) 594, 928, 960, 1377
ErhI CCWWGG 4 cut(s) 594, 928, 960, 1377
FaeI CATG 6 cut(s) 548, 578, 598, 656, 755, 932
FalI AAGNNNNNCTT 2 cut(s) 1101, 1133
FaqI GGGAC 2 cut(s) 505, 1095
FatI CATG 6 cut(s) 544, 574, 594, 652, 751, 928
FauI CCCGC 3 cut(s) 275, 463, 1072
Fnu4HI GCNGC 7 cut(s) 59, 64, 328, 585, 1033, 1077, 1330
FokI GGATG 6 cut(s) 368, 383, 620, 1211, 1394, 1415
Fsp4HI GCNGC 7 cut(s) 59, 64, 328, 585, 1033, 1077, 1330
FspBI CTAG 1 cut(s) 1235
GlaI GCGC 4 cut(s) 62, 191, 380, 438
GluI GCNGC 7 cut(s) 59, 64, 328, 585, 1033, 1077, 1330
GsaI CCCAGC 1 cut(s) 190
HaeII RGCGCY 2 cut(s) 64, 440
HaeIII GGCC 8 cut(s) 80, 162, 185, 359, 602, 858, 927, 959
HapII CCGG 2 cut(s) 159, 665
HgaI GACGC 1 cut(s) 97
HhaI GCGC 4 cut(s) 63, 192, 381, 439
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 6 cut(s) 548, 578, 598, 656, 755, 932
Hin6I GCGC 4 cut(s) 61, 190, 379, 437
HinP1I GCGC 4 cut(s) 61, 190, 379, 437
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 1115
HinfI GANTC 4 cut(s) 1027, 1060, 1161, 1353
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 2 cut(s) 159, 665
HphI GGTGA 2 cut(s) 334, 1366
Hpy166II GTNNAC 4 cut(s) 250, 367, 534, 661
Hpy188I TCNGA 4 cut(s) 120, 308, 1152, 1352
Hpy188III TCNNGA 7 cut(s) 33, 637, 722, 1007, 1024, 1121, 1247
Hpy8I GTNNAC 4 cut(s) 250, 367, 534, 661
Hpy99I CGWCG 4 cut(s) 113, 176, 278, 1139
HpyAV CCTTC 4 cut(s) 15, 219, 1060, 1203
HpyCH4III ACNGT 3 cut(s) 302, 322, 1279
HpyCH4V TGCA 6 cut(s) 4, 692, 1016, 1265, 1388, 1406
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 336, 903, 1085, 1329
HpyF3I CTNAG 8 cut(s) 53, 72, 203, 432, 609, 745, 1008, 1425
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 6 cut(s) 548, 578, 598, 656, 755, 932
HspAI GCGC 4 cut(s) 61, 190, 379, 437
KspAI GTTAAC 1 cut(s) 367
KspI CCGCGG 1 cut(s) 1080
Kzo9I GATC 4 cut(s) 177, 724, 1142, 1243
LmnI GCTCC 1 cut(s) 540
Lsp1109I GCAGC 4 cut(s) 50, 70, 314, 596
LweI GCATC 3 cut(s) 390, 1375, 1393
MaeI CTAG 1 cut(s) 1235
MaeIII GTNAC 4 cut(s) 815, 949, 997, 1237
MalI GATC 4 cut(s) 179, 726, 1144, 1245
MbiI CCGCTC 2 cut(s) 608, 642
MboI GATC 4 cut(s) 177, 724, 1142, 1243
MboII GAAGA 4 cut(s) 124, 268, 856, 1267
MflI RGATCY 2 cut(s) 177, 724
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 4 cut(s) 623, 795, 803, 1036
MluNI TGGCCA 1 cut(s) 959
MlyI GAGTC 2 cut(s) 1021, 1155
MmeI TCCRAC 1 cut(s) 409
Mox20I TGGCCA 1 cut(s) 959
MroXI GAANNNNTTC 1 cut(s) 1116
MscI TGGCCA 1 cut(s) 959
MseI TTAA 3 cut(s) 11, 366, 1217
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 959
MspA1I CMGCKG 2 cut(s) 587, 1079
MspI CCGG 2 cut(s) 159, 665
MspR9I CCNGG 1 cut(s) 665
Mva1269I GAATGC 1 cut(s) 978
MvnI CGCG 1 cut(s) 1079
MwoI GCNNNNNNNGC 5 cut(s) 58, 336, 903, 1085, 1329
NciI CCSGG 1 cut(s) 665
NcoI CCATGG 2 cut(s) 594, 928
NdeII GATC 4 cut(s) 177, 724, 1142, 1243
NlaIII CATG 6 cut(s) 548, 578, 598, 656, 755, 932
NlaIV GGNNCC 6 cut(s) 163, 542, 592, 601, 669, 742
NmuCI GTSAC 1 cut(s) 1237
PaqCI CACCTGC 1 cut(s) 1270
PceI AGGCCT 1 cut(s) 858
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PctI GAATGC 1 cut(s) 978
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 2 cut(s) 1060, 1353
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 7 cut(s) 60, 65, 329, 586, 1034, 1078, 1331
PleI GAGTC 2 cut(s) 1021, 1155
PpsI GAGTC 2 cut(s) 1021, 1155
PpuMI RGGWCCY 1 cut(s) 1021
PshBI ATTAAT 2 cut(s) 11, 1217
PsiI TTATAA 1 cut(s) 834
Psp5II RGGWCCY 1 cut(s) 1021
PspFI CCCAGC 1 cut(s) 186
PspN4I GGNNCC 6 cut(s) 163, 542, 592, 601, 669, 742
PspPI GGNCC 8 cut(s) 79, 161, 184, 600, 667, 877, 925, 1021
PspPPI RGGWCCY 1 cut(s) 1021
PsuI RGATCY 2 cut(s) 177, 724
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 4 cut(s) 266, 533, 1072, 1281
RsaNI GTAC 4 cut(s) 265, 532, 1071, 1280
RseI CAYNNNNRTG 1 cut(s) 345
SacII CCGCGG 1 cut(s) 1080
SaqAI TTAA 3 cut(s) 11, 366, 1217
SatI GCNGC 7 cut(s) 59, 64, 328, 585, 1033, 1077, 1330
Sau3AI GATC 4 cut(s) 177, 724, 1142, 1243
Sau96I GGNCC 8 cut(s) 79, 161, 184, 600, 667, 877, 925, 1021
ScaI AGTACT 1 cut(s) 266
SchI GAGTC 2 cut(s) 1021, 1155
ScrFI CCNGG 1 cut(s) 665
SfaNI GCATC 3 cut(s) 390, 1375, 1393
Sfr303I CCGCGG 1 cut(s) 1080
SgrBI CCGCGG 1 cut(s) 1080
SinI GGWCC 3 cut(s) 667, 877, 1021
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 3 cut(s) 464, 810, 1172
SmoI CTYRAG 3 cut(s) 464, 810, 1172
Sse9I AATT 4 cut(s) 623, 795, 803, 1036
SseBI AGGCCT 1 cut(s) 858
SspMI CTAG 1 cut(s) 1235
StuI AGGCCT 1 cut(s) 858
StyD4I CCNGG 1 cut(s) 663
StyI CCWWGG 4 cut(s) 594, 928, 960, 1377
TaaI ACNGT 3 cut(s) 302, 322, 1279
TaqI TCGA 3 cut(s) 135, 212, 273
TasI AATT 4 cut(s) 623, 795, 803, 1036
TatI WGTACW 4 cut(s) 264, 531, 1070, 1279
TauI GCSGC 3 cut(s) 1035, 1079, 1332
TfiI GAWTC 2 cut(s) 1060, 1353
Tru1I TTAA 3 cut(s) 11, 366, 1217
Tru9I TTAA 3 cut(s) 11, 366, 1217
TscAI CASTG 3 cut(s) 341, 887, 1246
TseFI GTSAC 1 cut(s) 1237
TseI GCWGC 4 cut(s) 58, 63, 327, 584
Tsp45I GTSAC 1 cut(s) 1237
TspDTI ATGAA 4 cut(s) 638, 853, 1200, 1313
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 3 cut(s) 341, 887, 1246
Van91I CCANNNNNTGG 1 cut(s) 104
VpaK11BI GGWCC 3 cut(s) 667, 877, 1021
VspI ATTAAT 2 cut(s) 11, 1217
XapI RAATTY 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 1 cut(s) 1235
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.