Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010719

Physical Location & Seq

Genomic Coordinates Reverse (-)

16219220 .. 16220928

Gene Structure 1709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTGGTAAAGGTGGGAAAGGGCTTCTAGCTGCGAAGACGACGGCAGCAGCTGCAAACAAAGACAGTGTTAAGAAGAAATCCATCTCTCGCTCTTCTCGTGCTGGTATTCAGTTTCCAGTGGGTCGTATTCATCGTCAACTCAAGCAAAGAGTTTCAGCACATGGAAGAGTTGGTGCCACTGCTGCTGTTTACACTGCATCAATTCTAGAATACTTGACTGCTGAAGTACTCGAGTTAGCTGGAAATGCGAGCAAGGATCTCAAAGTGAAGAGAATTACACCAAGACATTTGCAGCTTGCAATCAGAGGAGATGAGGAACTTGACACTCTCATCAAAGGAACCATTGCAGGAGGAGGTGTGATCCCTCACATCCACAAGTCCCTTGTCAACAAAGTCACCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044030 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

136

Amino Acids

14.37

Weight (kDa)

10.48

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	23 - 104	2.9e-20	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	106 - 135	2e-10	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38810 AT2G38810 AT2G38810 AT2G38810
fragaria_vesca	FvH4_2g22780
malus_domestica	MD03G1256100.v1.1 MD11G1276900.v1.1
prunus_persica	Prupe.8G233200_v2.0.a1 Prupe.8G233200_v2.0.a1
pyrus_communis	pycom11g24490
rosa_chinensis	RchiOBHm_Chr6g0289701
rosa_laevigata	RLG00000012274
rosa_multiflora	Rmu_sc0005640.1_g000031
rosa_roxburghii	Rroxscaffold_7G00177640 Rroxscaffold_7G00178130
rosa_rugosa	Rorug06G0205800
rosa_samantha	Rh6AG317500 Rh6BG325100 Rh6DG316400
rosa_wichuraiana	Rw6G027380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AclWI	GGATC	2 cut(s)	267, 358
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	231
AluBI	AGCT	4 cut(s)	32, 53, 242, 298
AluI	AGCT	4 cut(s)	32, 53, 242, 298
AlwI	GGATC	2 cut(s)	267, 358
AlwNI	CAGNNNCTG	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	6 cut(s)	32, 47, 50, 53, 185, 295
AsuHPI	GGTGA	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	6 cut(s)	19, 40, 59, 62, 172, 307
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	29, 209
BisI	GCNGC	6 cut(s)	33, 48, 51, 54, 186, 296
BlsI	GCNGC	6 cut(s)	34, 49, 52, 55, 187, 297
BmcAI	AGTACT	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	178, 343
BmsI	GCATC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	324, 369
BseXI	GCAGC	6 cut(s)	19, 40, 59, 62, 172, 307
BshNI	GGYRCC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	367
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	259, 363
BspLI	GGNNCC	2 cut(s)	178, 343
BspPI	GGATC	2 cut(s)	267, 358
BspQI	GCTCTTC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	2 cut(s)	259, 363
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	3 cut(s)	100, 163, 266
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	253, 300
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	2 cut(s)	262, 366
BstMBI	GATC	2 cut(s)	259, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 185, 248
BstV1I	GCAGC	6 cut(s)	19, 40, 59, 62, 172, 307
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	372
BtsI	GCAGTG	2 cut(s)	180, 195
BtsIMutI	CAGTG	4 cut(s)	73, 126, 180, 195
Cac8I	GCNNGC	2 cut(s)	253, 300
CaiI	CAGNNNCTG	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	6 cut(s)	5, 25, 32, 53, 242, 298
CviKI_1	RGCY	6 cut(s)	5, 25, 32, 53, 242, 298
CviQI	GTAC	1 cut(s)	230
DpnI	GATC	2 cut(s)	261, 365
DpnII	GATC	2 cut(s)	259, 363
Eam1104I	CTCTTC	3 cut(s)	100, 163, 266
EarI	CTCTTC	3 cut(s)	100, 163, 266
Eco130I	CCWWGG	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	167
FaiI	YATR	1 cut(s)	165
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	6 cut(s)	33, 48, 51, 54, 186, 296
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	6 cut(s)	33, 48, 51, 54, 186, 296
FspBI	CTAG	2 cut(s)	29, 209
GluI	GCNGC	6 cut(s)	33, 48, 51, 54, 186, 296
Hin1II	CATG	1 cut(s)	167
HincII	GTYRAC	2 cut(s)	140, 391
HindII	GTYRAC	2 cut(s)	140, 391
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	140, 193, 391
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	3 cut(s)	140, 193, 391
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	56, 200, 295, 302, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 185, 248
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	259, 363
LguI	GCTCTTC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	90, 132, 228, 336
Lsp1109I	GCAGC	6 cut(s)	19, 40, 59, 62, 172, 307
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	29, 209
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	261, 365
MboI	GATC	2 cut(s)	259, 363
MboII	GAAGA	5 cut(s)	49, 87, 88, 180, 283
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	2 cut(s)	204, 276
MnlI	CCTC	5 cut(s)	302, 310, 347, 350, 378
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	53, 185, 248
NdeII	GATC	2 cut(s)	259, 363
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	178, 343
NmuCI	GTSAC	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	2 cut(s)	97, 133
PkrI	GCNGC	6 cut(s)	34, 49, 52, 55, 187, 297
PspN4I	GGNNCC	2 cut(s)	178, 343
PspXI	VCTCGAGB	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	6 cut(s)	33, 48, 51, 54, 186, 296
Sau3AI	GATC	2 cut(s)	259, 363
ScaI	AGTACT	1 cut(s)	231
SetI	ASST	6 cut(s)	16, 34, 55, 244, 300, 361
SfaNI	GCATC	1 cut(s)	209
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	143, 233
SmoI	CTYRAG	2 cut(s)	143, 233
Sse9I	AATT	2 cut(s)	204, 276
SspMI	CTAG	2 cut(s)	29, 209
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	204, 276
TatI	WGTACW	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	4 cut(s)	73, 126, 187, 202
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	6 cut(s)	32, 47, 50, 53, 185, 295
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	4 cut(s)	73, 126, 187, 202
XbaI	TCTAGA	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	2 cut(s)	29, 209
ZrmI	AGTACT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.