RLG00000012274

Histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010719
Physical Location & Seq
Reverse (-)
17006024 .. 17008177
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012274

Sequence Viewer

Length: 489 bp
ATGAACCGCCCTTTGGTTCCTCTTCTACGACGACTCCCTCCCTTCTCTCTCCGACTTCTCAAGAACCCATCAGGATTAATGGCGGGGAAAGGCGGAAAGGGGCTTTTGGCTCAGAAGACCACAGCAGCGAGCAAGGACAAGGACAAGGATAAGAAGAGGCCTGTTTCGCGCTCCTCTCGTGCTGGAATTCAGTTTCCGGTTGGTAGGATTCATAGGCAGCTGAAACAAAGGATTGCTGCCCATGGGCGTGTTGGGGCTACTGCTGCTGTCTACTTGGCCTCAATCCTCGAGTACCTGACTGCTGAAGTTCTTGAGTTGGCTGGAAATGCTAGCAAAGATCTCAAGGTGAAGAGAATTACCCCAAGGCATCTTCAGCTGGCTATTAGGGGAGATGAGGAGCTTGACACCCTGATTAAAGGGACCATTGCTGGAGGTGGAGTCATTCCTCACATCCACAAGTCCCTCATCAACAAGACCTCGAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04217 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05322 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04217 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05322 map05418
Pfam Domains
Protein Families
EF-hand_7 Histone Histone_H2A_C

Protein Analysis

163

Amino Acids

17.59

Weight (kDa)

10.91

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 45 - 130 2.8e-21 Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C PF16211 132 - 161 2e-10 C-terminus of histone H2A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010719)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38810 AT2G38810 AT2G38810 AT2G38810
fragaria_vesca FvH4_2g22780
malus_domestica MD03G1256100.v1.1 MD11G1276900.v1.1
prunus_persica Prupe.8G233200_v2.0.a1 Prupe.8G233200_v2.0.a1
pyrus_communis pycom11g24490
rosa_chinensis RchiOBHm_Chr6g0289701
rosa_laevigata RLG00000012274
rosa_multiflora Rmu_sc0005640.1_g000031
rosa_roxburghii Rroxscaffold_7G00177640 Rroxscaffold_7G00178130
rosa_rugosa Rorug06G0205800
rosa_samantha Rh6AG317500 Rh6BG325100 Rh6DG316400
rosa_wichuraiana Rw6G027380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 169
AciI CCGC 3 cut(s) 7, 83, 93
AcsI RAATTY 1 cut(s) 186
AcuI CTGAAG 2 cut(s) 324, 356
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 13
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 3 cut(s) 220, 376, 400
AluI AGCT 3 cut(s) 220, 376, 400
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 2 cut(s) 158, 276
ApeKI GCWGC 4 cut(s) 125, 217, 236, 263
ApoI RAATTY 1 cut(s) 186
AseI ATTAAT 1 cut(s) 77
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 358
AsuNHI GCTAGC 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 1 cut(s) 420
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 4 cut(s) 137, 223, 229, 250
BccI CCATC 1 cut(s) 76
BfaI CTAG 1 cut(s) 330
BglII AGATCT 1 cut(s) 337
BisI GCNGC 4 cut(s) 126, 218, 237, 264
BlsI GCNGC 4 cut(s) 127, 219, 238, 265
Bme18I GGWCC 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 18, 421
BmsI GCATC 1 cut(s) 376
BmtI GCTAGC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 3 cut(s) 44, 326, 332
BsaJI CCNNGG 2 cut(s) 241, 362
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 423, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 241, 362
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 2 cut(s) 163, 410
BseXI GCAGC 4 cut(s) 137, 223, 229, 250
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 160, 278
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 2 cut(s) 433, 445
BslI CCNNNNNNNGG 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 433, 445
BsnI GGCC 2 cut(s) 160, 278
BsoBI CYCGRG 1 cut(s) 287
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 3 cut(s) 7, 83, 93
BspANI GGCC 2 cut(s) 160, 278
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 18, 421
BspOI GCTAGC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 423
BssECI CCNNGG 2 cut(s) 241, 362
BssMI GATC 1 cut(s) 337
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 2 cut(s) 241, 362
Bst2BI CACGAG 1 cut(s) 177
Bst6I CTCTTC 3 cut(s) 27, 149, 344
BstC8I GCNNGC 3 cut(s) 130, 331, 378
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 450
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 4 cut(s) 166, 263, 326, 373
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 137, 223, 229, 250
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 2 cut(s) 160, 278
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 450
Cac8I GCNNGC 3 cut(s) 130, 331, 378
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 292
CviAII CATG 1 cut(s) 242
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Eam1104I CTCTTC 3 cut(s) 27, 149, 344
EarI CTCTTC 3 cut(s) 27, 149, 344
EciI GGCGGA 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 241, 362
Eco147I AGGCCT 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 324, 356
Eco88I CYCGRG 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 241, 362
ErhI CCWWGG 2 cut(s) 241, 362
FaeI CATG 1 cut(s) 245
FaiI YATR 2 cut(s) 213, 243
FaqI GGGAC 2 cut(s) 433, 445
FatI CATG 1 cut(s) 241
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 126, 218, 237, 264
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 126, 218, 237, 264
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 170
GluI GCNGC 4 cut(s) 126, 218, 237, 264
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 2 cut(s) 160, 278
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 245
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 3 cut(s) 33, 208, 438
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 53, 114
Hpy188III TCNNGA 3 cut(s) 61, 72, 311
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 2 cut(s) 52, 475
HpyF10VI GCNNNNNNNGC 4 cut(s) 166, 263, 326, 373
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 1 cut(s) 245
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 2 cut(s) 176, 397
LpnPI CCDG 9 cut(s) 57, 168, 174, 210, 306, 308, 362, 414, 422
Lsp1109I GCAGC 4 cut(s) 137, 223, 229, 250
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 330
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 5 cut(s) 14, 127, 166, 361, 362
MflI RGATCY 1 cut(s) 337
MluCI AATT 2 cut(s) 186, 354
MlyI GAGTC 2 cut(s) 27, 447
MmeI TCCRAC 1 cut(s) 76
MseI TTAA 2 cut(s) 77, 414
MslI CAYNNNNRTG 1 cut(s) 246
MspA1I CMGCKG 2 cut(s) 220, 376
MspI CCGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 4 cut(s) 166, 263, 326, 373
NcoI CCATGG 1 cut(s) 241
NdeII GATC 1 cut(s) 337
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 18, 421
PaeR7I CTCGAG 1 cut(s) 287
PceI AGGCCT 1 cut(s) 160
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 4 cut(s) 127, 219, 238, 265
PleI GAGTC 2 cut(s) 27, 446
PpsI GAGTC 2 cut(s) 27, 446
PshBI ATTAAT 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 18, 421
PspPI GGNCC 1 cut(s) 420
PspXI VCTCGAGB 1 cut(s) 287
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 2 cut(s) 220, 376
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 77, 414
SatI GCNGC 4 cut(s) 126, 218, 237, 264
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 420
SchI GAGTC 2 cut(s) 27, 447
SetI ASST 7 cut(s) 222, 297, 348, 378, 402, 436, 479
SfaNI GCATC 1 cut(s) 376
Sfr274I CTCGAG 1 cut(s) 287
SinI GGWCC 1 cut(s) 420
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 4 cut(s) 59, 287, 311, 341
SmoI CTYRAG 4 cut(s) 59, 287, 311, 341
Sse9I AATT 2 cut(s) 186, 354
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 3 cut(s) 7, 83, 93
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 160
StyI CCWWGG 2 cut(s) 241, 362
TaqI TCGA 2 cut(s) 288, 479
TasI AATT 2 cut(s) 186, 354
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 2 cut(s) 77, 414
Tru9I TTAA 2 cut(s) 77, 414
TseI GCWGC 4 cut(s) 125, 217, 236, 263
TspDTI ATGAA 2 cut(s) 17, 200
VpaK11BI GGWCC 1 cut(s) 420
VspI ATTAAT 1 cut(s) 77
XapI RAATTY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.