Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005640.1

Orthogroup ID

OG0010719

Physical Location & Seq

Genomic Coordinates Reverse (-)

139481 .. 142801

Gene Structure 3321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005640.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgcattatgcccttcattgtcctcgtctagctagctacgattcctcctacggcgactccctgccttctctctcccgacttctcaagaacccttcagcaggattaatggcggggaaaggcggaaaggggcttttggctcagaagaccacagcagcgagcaaggacaaggacaaggataagaagaggcctgtttcgcgctcgtctcgtgctggaattcagtttccggttggtaggattcataggcagctgaaacaaaggattgctgcccatgggcgtgttggggctactgctgctgtctacttggcctcaatccttgagtacctgactgctgaagttcttgagttggctggaaatgctagcaaagatctcaaggtgaagagaattaccccaaggcatcttcagctggctattaggggagatgaggagcttgacaccctgattaaagggaccattgctggaggtggagtcattcctcacatccacaagtccctcatcaacaagacctccaaggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04217 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05322 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04217 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05322 map05418

Pfam Domains

Protein Families

EF-hand_7 Histone Histone_H2A_C

Protein Analysis

171

Amino Acids

18.41

Weight (kDa)

10.15

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38810 AT2G38810 AT2G38810 AT2G38810
fragaria_vesca	FvH4_2g22780
malus_domestica	MD03G1256100.v1.1 MD11G1276900.v1.1
prunus_persica	Prupe.8G233200_v2.0.a1 Prupe.8G233200_v2.0.a1
pyrus_communis	pycom11g24490
rosa_chinensis	RchiOBHm_Chr6g0289701
rosa_laevigata	RLG00000012274
rosa_multiflora	Rmu_sc0005640.1_g000031
rosa_roxburghii	Rroxscaffold_7G00177640 Rroxscaffold_7G00178130
rosa_rugosa	Rorug06G0205800
rosa_samantha	Rh6AG317500 Rh6BG325100 Rh6DG316400
rosa_wichuraiana	Rw6G027380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	196
AciI	CCGC	2 cut(s)	110, 120
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	3 cut(s)	78, 351, 383
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	98
AluBI	AGCT	5 cut(s)	32, 36, 247, 403, 427
AluI	AGCT	5 cut(s)	32, 36, 247, 403, 427
Alw26I	GTCTC	1 cut(s)	207
AoxI	GGCC	2 cut(s)	185, 303
ApeKI	GCWGC	4 cut(s)	152, 244, 263, 290
ApoI	RAATTY	1 cut(s)	213
AseI	ATTAAT	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	385
AsuNHI	GCTAGC	2 cut(s)	32, 356
AvaII	GGWCC	1 cut(s)	447
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	4 cut(s)	164, 250, 256, 277
BceAI	ACGGC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	3 cut(s)	29, 33, 357
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	4 cut(s)	153, 245, 264, 291
BlsI	GCNGC	4 cut(s)	154, 246, 265, 292
Bme18I	GGWCC	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	448
BmsI	GCATC	1 cut(s)	403
BmtI	GCTAGC	2 cut(s)	36, 360
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	4 cut(s)	68, 335, 353, 359
BsaJI	CCNNGG	3 cut(s)	268, 389, 507
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	7 cut(s)	29, 41, 59, 71, 450, 480, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	268, 389, 507
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	4 cut(s)	164, 250, 256, 277
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	187, 305
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	2 cut(s)	460, 472
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsmFI	GGGAC	2 cut(s)	460, 472
BsnI	GGCC	2 cut(s)	187, 305
Bsp143I	GATC	1 cut(s)	364
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	2 cut(s)	110, 120
BspANI	GGCC	2 cut(s)	187, 305
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	448
BspOI	GCTAGC	2 cut(s)	36, 360
BsrDI	GCAATG	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	268, 389, 507
BssMI	GATC	1 cut(s)	364
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	3 cut(s)	268, 389, 507
Bst2BI	CACGAG	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	176, 371
BstC8I	GCNNGC	4 cut(s)	34, 157, 358, 405
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 290, 353, 400
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	4 cut(s)	164, 250, 256, 277
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	187, 305
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	477
Cac8I	GCNNGC	4 cut(s)	34, 157, 358, 405
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	269
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	176, 371
EarI	CTCTTC	2 cut(s)	176, 371
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	3 cut(s)	268, 389, 507
Eco147I	AGGCCT	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	3 cut(s)	78, 351, 383
EcoNI	CCTNNNNNAGG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	213
EcoT14I	CCWWGG	3 cut(s)	268, 389, 507
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	268, 389, 507
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	1 cut(s)	272
FaiI	YATR	3 cut(s)	9, 240, 270
FaqI	GGGAC	2 cut(s)	460, 472
FatI	CATG	1 cut(s)	268
FauI	CCCGC	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	4 cut(s)	153, 245, 264, 291
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	4 cut(s)	153, 245, 264, 291
FspBI	CTAG	3 cut(s)	29, 33, 357
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	4 cut(s)	153, 245, 264, 291
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	187, 305
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	41, 56, 235, 465
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	3 cut(s)	75, 85, 338
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	3 cut(s)	23, 75, 102
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 290, 353, 400
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	424
Lsp1109I	GCAGC	4 cut(s)	164, 250, 256, 277
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	3 cut(s)	29, 33, 357
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	4 cut(s)	154, 193, 388, 389
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	2 cut(s)	213, 381
MlyI	GAGTC	2 cut(s)	50, 474
MnlI	CCTC	9 cut(s)	33, 55, 177, 316, 415, 452, 483, 500, 514
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	104, 441
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	247, 403
MspI	CCGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	4 cut(s)	193, 290, 353, 400
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	1 cut(s)	364
NheI	GCTAGC	2 cut(s)	32, 356
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	41, 235
PkrI	GCNGC	4 cut(s)	154, 246, 265, 292
PleI	GAGTC	2 cut(s)	50, 473
PpsI	GAGTC	2 cut(s)	50, 473
PshBI	ATTAAT	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	364
PvuII	CAGCTG	2 cut(s)	247, 403
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	104, 441
SatI	GCNGC	4 cut(s)	153, 245, 264, 291
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	2 cut(s)	50, 474
SetI	ASST	9 cut(s)	34, 38, 249, 324, 375, 405, 429, 463, 506
SfaNI	GCATC	1 cut(s)	403
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	4 cut(s)	83, 314, 338, 368
SmoI	CTYRAG	4 cut(s)	83, 314, 338, 368
Sse9I	AATT	2 cut(s)	213, 381
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	110, 120
SspMI	CTAG	3 cut(s)	29, 33, 357
StuI	AGGCCT	1 cut(s)	187
StyI	CCWWGG	3 cut(s)	268, 389, 507
TasI	AATT	2 cut(s)	213, 381
TfiI	GAWTC	2 cut(s)	41, 235
Tru1I	TTAA	2 cut(s)	104, 441
Tru9I	TTAA	2 cut(s)	104, 441
TseI	GCWGC	4 cut(s)	152, 244, 263, 290
TspDTI	ATGAA	2 cut(s)	5, 227
VpaK11BI	GGWCC	1 cut(s)	447
VspI	ATTAAT	1 cut(s)	104
XagI	CCTNNNNNAGG	1 cut(s)	96
XapI	RAATTY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	3 cut(s)	29, 33, 357
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.