MD11G1276900.v1.1

histone h2a

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010719
Physical Location & Seq
Forward (+)
39399150 .. 39401256
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1276900.v1.1.491

Sequence Viewer

Length: 417 bp
ATGGCGGGCAAAGGCGGGAAGGGGCTTATTGCAGCGAAAACCACAGCGGCTAACAAGGACAAAGAAAAGGAGAAGGACAAGAAGAGGCCTGTTTCTCGTTCATCTCGCGCTGGTATCCAGTTTCCGGTGGGTCGAATTCATAGGCAGCTGAAACAGCGAATTGCTGCTCATGGCCGTGTTGGTGCCACTGCTGCTGTGTACTTGGCCTCAATCCTCGAGTACCTAACTGCTGAGGTTCTTGAGTTGGCCGGGAATGCTAGCAAGGATCTCAAGGTCAAGAGAATCACACCCAGGCATCTGCAACTAGCCATCAGGGGAGATGAGGAGCTGGACACTCTGATCAAGGGAACCATTGCTGGCGGTGGTGTCATCCCCCACATCCACAAGTCCCTCATCAACAAGACTTCCAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04217 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05322 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04217 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05322 map05418
Pfam Domains
Protein Families
EF-hand_7 Histone Histone_H2A_C

Protein Analysis

139

Amino Acids

14.85

Weight (kDa)

10.31

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 20 - 106 4.9e-22 Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C PF16211 108 - 137 1.5e-10 C-terminus of histone H2A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010719)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38810 AT2G38810 AT2G38810 AT2G38810
fragaria_vesca FvH4_2g22780
malus_domestica MD03G1256100.v1.1 MD11G1276900.v1.1
prunus_persica Prupe.8G233200_v2.0.a1 Prupe.8G233200_v2.0.a1
pyrus_communis pycom11g24490
rosa_chinensis RchiOBHm_Chr6g0289701
rosa_laevigata RLG00000012274
rosa_multiflora Rmu_sc0005640.1_g000031
rosa_roxburghii Rroxscaffold_7G00177640 Rroxscaffold_7G00178130
rosa_rugosa Rorug06G0205800
rosa_samantha Rh6AG317500 Rh6BG325100 Rh6DG316400
rosa_wichuraiana Rw6G027380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AccII CGCG 1 cut(s) 108
AciI CCGC 4 cut(s) 5, 15, 47, 360
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 2 cut(s) 172, 246
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 2 cut(s) 200, 221
AfiI CCNNNNNNNGG 1 cut(s) 124
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 2 cut(s) 148, 328
AluI AGCT 2 cut(s) 148, 328
AlwI GGATC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 4 cut(s) 86, 172, 204, 246
ApeKI GCWGC 4 cut(s) 32, 145, 164, 191
ApoI RAATTY 1 cut(s) 135
AspLEI GCGC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 250
AsuNHI GCTAGC 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 215
BanI GGYRCC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 44, 151, 157, 178
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 292
BciVI GTATCC 1 cut(s) 125
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 1 cut(s) 250
BfaI CTAG 2 cut(s) 258, 305
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 5 cut(s) 33, 48, 146, 165, 192
BlsI GCNGC 5 cut(s) 34, 49, 147, 166, 193
Bme1390I CCNGG 2 cut(s) 250, 292
BmeT110I CYCGRG 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 184, 349
BmrFI CCNGG 2 cut(s) 250, 292
BmsI GCATC 1 cut(s) 304
BmtI GCTAGC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 254, 260
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 290, 408
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 290, 408
BseGI GGATG 2 cut(s) 369, 378
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 4 cut(s) 44, 151, 157, 178
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 4 cut(s) 88, 174, 206, 248
BshNI GGYRCC 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 125, 249
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 4 cut(s) 88, 174, 206, 248
BsoBI CYCGRG 1 cut(s) 215
Bsp143I GATC 2 cut(s) 265, 339
BspACI CCGC 4 cut(s) 5, 15, 47, 360
BspANI GGCC 4 cut(s) 88, 174, 206, 248
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 184, 349
BspOI GCTAGC 1 cut(s) 261
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 290, 408
BssMI GATC 2 cut(s) 265, 339
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 3 cut(s) 7, 259, 358
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 369, 378
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 268, 342
BstMBI GATC 2 cut(s) 265, 339
BstMWI GCNNNNNNNGC 3 cut(s) 154, 191, 254
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 248, 290
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 4 cut(s) 44, 151, 157, 178
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 4 cut(s) 88, 174, 206, 248
BtsCI GGATG 2 cut(s) 369, 378
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 7, 259, 358
CfoI GCGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 199, 220
CviAII CATG 1 cut(s) 170
CviJI RGCY 9 cut(s) 25, 50, 88, 148, 174, 206, 248, 308, 328
CviKI_1 RGCY 9 cut(s) 25, 50, 88, 148, 174, 206, 248, 308, 328
CviQI GTAC 2 cut(s) 199, 220
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 267, 341
DpnII GATC 2 cut(s) 265, 339
EaeI YGGCCR 2 cut(s) 172, 246
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 1 cut(s) 173
FaiI YATR 2 cut(s) 141, 171
FaqI GGGAC 1 cut(s) 373
FatI CATG 1 cut(s) 169
FauI CCCGC 1 cut(s) 8
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 5 cut(s) 33, 48, 146, 165, 192
FokI GGATG 2 cut(s) 356, 365
Fsp4HI GCNGC 5 cut(s) 33, 48, 146, 165, 192
FspBI CTAG 2 cut(s) 258, 305
GlaI GCGC 1 cut(s) 109
GluI GCNGC 5 cut(s) 33, 48, 146, 165, 192
HaeIII GGCC 4 cut(s) 88, 174, 206, 248
HapII CCGG 2 cut(s) 125, 249
HhaI GCGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 173
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 282
HpaII CCGG 2 cut(s) 125, 249
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 2 cut(s) 239, 277
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 13, 67
HpyCH4V TGCA 2 cut(s) 32, 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 191, 254
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 173
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 2 cut(s) 265, 339
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 4 cut(s) 44, 151, 157, 178
LweI GCATC 1 cut(s) 304
MaeI CTAG 2 cut(s) 258, 305
MalI GATC 2 cut(s) 267, 341
MboI GATC 2 cut(s) 265, 339
MboII GAAGA 1 cut(s) 94
MflI RGATCY 1 cut(s) 265
MluCI AATT 2 cut(s) 135, 159
MnlI CCTC 6 cut(s) 78, 217, 224, 226, 316, 401
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 47, 148
MspI CCGG 2 cut(s) 125, 249
MspR9I CCNGG 2 cut(s) 250, 292
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 3 cut(s) 154, 191, 254
NciI CCSGG 1 cut(s) 250
NdeII GATC 2 cut(s) 265, 339
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 2 cut(s) 184, 349
PaeR7I CTCGAG 1 cut(s) 215
PceI AGGCCT 1 cut(s) 88
PctI GAATGC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 5 cut(s) 34, 49, 147, 166, 193
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 184, 349
PspXI VCTCGAGB 1 cut(s) 215
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 2 cut(s) 200, 221
RsaNI GTAC 2 cut(s) 199, 220
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 5 cut(s) 33, 48, 146, 165, 192
Sau3AI GATC 2 cut(s) 265, 339
ScrFI CCNGG 2 cut(s) 250, 292
SetI ASST 5 cut(s) 150, 225, 237, 276, 330
SfaNI GCATC 1 cut(s) 304
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 3 cut(s) 215, 239, 269
SmoI CTYRAG 3 cut(s) 215, 239, 269
Sse9I AATT 2 cut(s) 135, 159
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 4 cut(s) 5, 15, 47, 360
SspMI CTAG 2 cut(s) 258, 305
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 248, 290
StyI CCWWGG 1 cut(s) 408
TaqI TCGA 2 cut(s) 133, 216
TasI AATT 2 cut(s) 135, 159
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 1 cut(s) 282
TscAI CASTG 1 cut(s) 193
TseI GCWGC 4 cut(s) 32, 145, 164, 191
TspDTI ATGAA 2 cut(s) 90, 128
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 135
XhoI CTCGAG 1 cut(s) 215
XspI CTAG 2 cut(s) 258, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.