Rh6AG317500

Histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010719
Physical Location & Seq
Forward (+)
51668131 .. 51670341
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG317500.1

Sequence Viewer

Length: 411 bp
ATGGCGGGGAAAGGCGGAAAGGGGCTTTTGGCTCAGAAGACCACAGCAGCGAGCAAGGACAAGGACAAGGATAAGAAGAGGCCTGTTTCGCGCTCGTCTCGTGCTGGAATTCAGTTTCCGGTTGGTAGGATTCATAGGCAGCTGAAACAAAGGATTGCTGCCCATGGGCGTGTTGGGGCTACTGCTGCTGTCTACTTGGCCTCAATCCTCGAGTACCTGACTGCTGAAGTTCTTGAGTTGGCTGGAAATGCTAGCAAAGATCTCAAGGTGAAGAGAATTACCCCAAGGCATCTTCAGCTGGCTATTAGGGGAGATGAGGAGCTTGACACCCTGATTAAAGGGACCATTGCTGGAGGTGGAGTCATTCCTCACATCCACAAGTCCCTCATCAACAAGACCTCGAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04217 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05322 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04217 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05322 map05418
Pfam Domains
Protein Families
EF-hand_7 Histone Histone_H2A_C

Protein Analysis

136

Amino Acids

14.61

Weight (kDa)

10.39

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 19 - 104 1.7e-21 Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C PF16211 106 - 135 1.5e-10 C-terminus of histone H2A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010719)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38810 AT2G38810 AT2G38810 AT2G38810
fragaria_vesca FvH4_2g22780
malus_domestica MD03G1256100.v1.1 MD11G1276900.v1.1
prunus_persica Prupe.8G233200_v2.0.a1 Prupe.8G233200_v2.0.a1
pyrus_communis pycom11g24490
rosa_chinensis RchiOBHm_Chr6g0289701
rosa_laevigata RLG00000012274
rosa_multiflora Rmu_sc0005640.1_g000031
rosa_roxburghii Rroxscaffold_7G00177640 Rroxscaffold_7G00178130
rosa_rugosa Rorug06G0205800
rosa_samantha Rh6AG317500 Rh6BG325100 Rh6DG316400
rosa_wichuraiana Rw6G027380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 91
AciI CCGC 2 cut(s) 5, 15
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 246, 278
AfaI GTAC 1 cut(s) 215
AluBI AGCT 3 cut(s) 142, 298, 322
AluI AGCT 3 cut(s) 142, 298, 322
Alw26I GTCTC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 80, 198
ApeKI GCWGC 4 cut(s) 47, 139, 158, 185
ApoI RAATTY 1 cut(s) 108
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 280
AsuNHI GCTAGC 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 342
BauI CACGAG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 4 cut(s) 59, 145, 151, 172
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 252
BglII AGATCT 1 cut(s) 259
BisI GCNGC 4 cut(s) 48, 140, 159, 186
BlsI GCNGC 4 cut(s) 49, 141, 160, 187
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 343
BmsI GCATC 1 cut(s) 298
BmtI GCTAGC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 372
BpuEI CTTGAG 2 cut(s) 248, 254
BsaJI CCNNGG 2 cut(s) 163, 284
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bse3DI GCAATG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 163, 284
BseGI GGATG 1 cut(s) 372
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 4 cut(s) 59, 145, 151, 172
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 2 cut(s) 82, 200
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 2 cut(s) 355, 367
BsmAI GTCTC 1 cut(s) 102
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 355, 367
BsnI GGCC 2 cut(s) 82, 200
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 1 cut(s) 259
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 2 cut(s) 5, 15
BspANI GGCC 2 cut(s) 82, 200
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 343
BspOI GCTAGC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 163, 284
BssMI GATC 1 cut(s) 259
BssSI CACGAG 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 163, 284
Bst2BI CACGAG 1 cut(s) 99
Bst6I CTCTTC 2 cut(s) 71, 266
BstC8I GCNNGC 3 cut(s) 52, 253, 300
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 372
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 4 cut(s) 88, 185, 248, 295
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 4 cut(s) 59, 145, 151, 172
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 2 cut(s) 82, 200
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 372
Cac8I GCNNGC 3 cut(s) 52, 253, 300
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 164
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 71, 266
EarI CTCTTC 2 cut(s) 71, 266
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 163, 284
Eco147I AGGCCT 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 342
Eco57I CTGAAG 2 cut(s) 246, 278
Eco88I CYCGRG 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 163, 284
ErhI CCWWGG 2 cut(s) 163, 284
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 1 cut(s) 167
FaiI YATR 2 cut(s) 135, 165
FaqI GGGAC 2 cut(s) 355, 367
FatI CATG 1 cut(s) 163
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 4 cut(s) 48, 140, 159, 186
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 4 cut(s) 48, 140, 159, 186
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 48, 140, 159, 186
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 2 cut(s) 82, 200
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 93
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 2 cut(s) 130, 360
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 397
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 185, 248, 295
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 90, 96, 132, 228, 230, 284, 336, 344
Lsp1109I GCAGC 4 cut(s) 59, 145, 151, 172
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 252
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 4 cut(s) 49, 88, 283, 284
MflI RGATCY 1 cut(s) 259
MluCI AATT 2 cut(s) 108, 276
MlyI GAGTC 1 cut(s) 369
MnlI CCTC 8 cut(s) 72, 211, 218, 310, 347, 378, 395, 409
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 2 cut(s) 142, 298
MspI CCGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 4 cut(s) 88, 185, 248, 295
NcoI CCATGG 1 cut(s) 163
NdeII GATC 1 cut(s) 259
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 209
PceI AGGCCT 1 cut(s) 82
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 4 cut(s) 49, 141, 160, 187
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 342
PspXI VCTCGAGB 1 cut(s) 209
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 2 cut(s) 142, 298
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 4 cut(s) 48, 140, 159, 186
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 1 cut(s) 369
SetI ASST 7 cut(s) 144, 219, 270, 300, 324, 358, 401
SfaNI GCATC 1 cut(s) 298
Sfr274I CTCGAG 1 cut(s) 209
SinI GGWCC 1 cut(s) 342
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 3 cut(s) 209, 233, 263
SmoI CTYRAG 3 cut(s) 209, 233, 263
Sse9I AATT 2 cut(s) 108, 276
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 2 cut(s) 5, 15
SspMI CTAG 1 cut(s) 252
StuI AGGCCT 1 cut(s) 82
StyI CCWWGG 2 cut(s) 163, 284
TaqI TCGA 2 cut(s) 210, 401
TasI AATT 2 cut(s) 108, 276
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 4 cut(s) 47, 139, 158, 185
TspDTI ATGAA 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.