Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018738

Physical Location & Seq

Genomic Coordinates Reverse (-)

16306491 .. 16308362

Gene Structure 1872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTCCTCAAGGTTCATGAAATTGCTTTTCTCTTTGGTCTCTTAGGCAACATTGTGTCTTTTGGGGTGTTCTTGTCACCAGTGCCAACGTTTTATGGGATATACAAGAAGAAATCATCAAAAGGGTTTCAGTCGATACCGTACATATGTGCACTAGCAAGTGCAACTCTTCTTCTCTACTACGGAATCATGAAGACACATGCTTATCTGATCATTAGTATTAACACCTTTGGATGTTTCATTGAAATCTCCTACTTGTTTCTCTATATCCTTTATGCACCAAGAGAGGCCAAGATATCCACGTTGAAGTTGATAGTGATATGCAACATCGGTGGACTTGGTCTCTTAATTCTTCTAGTTAATCTTTTGGTTCCAAAACAACACCGCGTCTCGACCGTTGGATGGGTTTGTGCTGCCTACAGTCTCGCAGTCTTTGCTTCTCCCTTAAGCGTCATGAGGAAGGTTATAAAGACAAAGAGTGTGGAATACATGCCGTTTCTTCTCTCCTTGTCTCTCACTCTTAACGCCGTCATGTGGTTCTTTTATGGACTTCTTATCAAAGACAAGTTCATTGCTATGCCAAACATTCTCGGTTTTCTATTCGGTGTAGCTCAGATGATACTATACATGATGTATCAAGGTTCCACGAAAACGGATTTGCCAACAGAGAACCAACTAGCAAATAAAACCGATGTTAACGAAGTCCCGATCGTGGCCGTTGAATTGCCTGATGTGGGATCAGACAATGTTGAAGGATCGGTGAGGCCAATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0012505 GO:0012506 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031982 GO:0031984 GO:0032588 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046903 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071836 GO:0071944 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

258

Amino Acids

28.72

Weight (kDa)

9.23

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 96	2.3e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	132 - 215	5.4e-30	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39060
fragaria_vesca	FvH4_6g01150
malus_domestica	MD04G1236000.v1.1 MD12G1255000.v1.1
prunus_persica	Prupe.2G245600_v2.0.a1 Prupe.6G355900_v2.0.a1 Prupe.6G355900_v2.0.a1
pyrus_communis	pycom04g20970 pycom12g23360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AccII	CGCG	1 cut(s)	387
AciI	CCGC	1 cut(s)	385
AclI	AACGTT	1 cut(s)	89
AclWI	GGATC	2 cut(s)	745, 763
AcoI	YGGCCR	1 cut(s)	714
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	4 cut(s)	402, 534, 712, 734
AflII	CTTAAG	1 cut(s)	445
AgsI	TTSAA	4 cut(s)	245, 307, 722, 752
AluBI	AGCT	1 cut(s)	611
AluI	AGCT	1 cut(s)	611
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	5 cut(s)	44, 347, 394, 428, 516
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	745, 763
AoxI	GGCC	3 cut(s)	288, 714, 764
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	69, 772
BaeGI	GKGCMC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	1 cut(s)	396
BceAI	ACGGC	3 cut(s)	478, 512, 701
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	5 cut(s)	44, 347, 394, 428, 516
BfaI	CTAG	3 cut(s)	155, 356, 677
BfmI	CTRYAG	1 cut(s)	418
BfrI	CTTAAG	1 cut(s)	445
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	372, 643
BpiI	GAAGAC	1 cut(s)	200
BsaI	GGTCTC	2 cut(s)	44, 347
Bsc4I	CCNNNNNNNGG	4 cut(s)	402, 534, 712, 734
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	239, 407
BseLI	CCNNNNNNNGG	4 cut(s)	402, 534, 712, 734
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	387
Bsh1285I	CGRYCG	2 cut(s)	396, 711
BshFI	GGCC	3 cut(s)	290, 716, 766
BsiEI	CGRYCG	2 cut(s)	396, 711
BsiHKAI	GWGCWC	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	4 cut(s)	402, 534, 712, 734
BsmAI	GTCTC	5 cut(s)	44, 347, 394, 428, 516
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	689
BsnI	GGCC	3 cut(s)	290, 716, 766
Bso31I	GGTCTC	2 cut(s)	44, 347
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	210, 708, 737, 755
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	3 cut(s)	290, 716, 766
BspCNI	CTCAG	1 cut(s)	625
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	3 cut(s)	16, 189, 453
BspLI	GGNNCC	2 cut(s)	372, 643
BspPI	GGATC	2 cut(s)	745, 763
BspTI	CTTAAG	1 cut(s)	445
BspTNI	GGTCTC	2 cut(s)	44, 347
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	80
BssMI	GATC	4 cut(s)	210, 708, 737, 755
Bst4CI	ACNGT	3 cut(s)	141, 397, 422
Bst6I	CTCTTC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	445
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	43, 612
BstF5I	GGATG	2 cut(s)	239, 407
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	213, 711, 740, 758
BstMAI	GTCTC	5 cut(s)	44, 347, 394, 428, 516
BstMBI	GATC	4 cut(s)	210, 708, 737, 755
BstMCI	CGRYCG	2 cut(s)	396, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNSI	RCATGY	2 cut(s)	203, 493
BstSFI	CTRYAG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	400
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	290, 716, 766
BtsCI	GGATG	2 cut(s)	239, 407
BtsIMutI	CAGTG	1 cut(s)	87
CciI	TCATGA	3 cut(s)	16, 189, 453
CseI	GACGC	2 cut(s)	376, 439
Csp6I	GTAC	1 cut(s)	142
CspCI	CAANNNNNGTGG	4 cut(s)	313, 348, 462, 497
CviAII	CATG	7 cut(s)	17, 190, 200, 454, 490, 532, 628
CviJI	RGCY	4 cut(s)	290, 611, 716, 766
CviKI_1	RGCY	4 cut(s)	290, 611, 716, 766
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	43, 612
DpnI	GATC	4 cut(s)	212, 710, 739, 757
DpnII	GATC	4 cut(s)	210, 708, 737, 755
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	44, 347
Eco32I	GATATC	1 cut(s)	297
EcoRV	GATATC	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	7 cut(s)	20, 193, 203, 457, 493, 535, 631
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	7 cut(s)	16, 189, 199, 453, 489, 531, 627
FauNDI	CATATG	1 cut(s)	146
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	2 cut(s)	246, 414
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	3 cut(s)	155, 356, 677
GluI	GCNGC	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	290, 716, 766
HgaI	GACGC	2 cut(s)	376, 439
Hin1II	CATG	7 cut(s)	20, 193, 203, 457, 493, 535, 631
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	1 cut(s)	186
HpaI	GTTAAC	1 cut(s)	697
HphI	GGTGA	2 cut(s)	69, 772
Hpy166II	GTNNAC	3 cut(s)	152, 335, 697
Hpy188I	TCNGA	3 cut(s)	210, 615, 742
Hpy188III	TCNNGA	5 cut(s)	17, 190, 391, 454, 706
Hpy8I	GTNNAC	3 cut(s)	152, 335, 697
HpyAV	CCTTC	2 cut(s)	454, 746
HpyCH4III	ACNGT	3 cut(s)	141, 397, 422
HpyCH4IV	ACGT	2 cut(s)	89, 302
HpyCH4V	TGCA	4 cut(s)	152, 164, 278, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	2 cut(s)	43, 612
HpySE526I	ACGT	2 cut(s)	89, 302
Hsp92II	CATG	7 cut(s)	20, 193, 203, 457, 493, 535, 631
Ksp22I	TGATCA	1 cut(s)	210
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	4 cut(s)	210, 708, 737, 755
LpnPI	CCDG	2 cut(s)	93, 741
Lsp1109I	GCAGC	1 cut(s)	400
MaeI	CTAG	3 cut(s)	155, 356, 677
MaeII	ACGT	2 cut(s)	89, 302
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	4 cut(s)	212, 710, 739, 757
MboI	GATC	4 cut(s)	210, 708, 737, 755
MboII	GAAGA	6 cut(s)	121, 161, 164, 205, 344, 491
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	3 cut(s)	21, 348, 722
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	4 cut(s)	17, 280, 450, 756
MseI	TTAA	6 cut(s)	222, 347, 360, 446, 522, 696
MslI	CAYNNNNRTG	1 cut(s)	575
MspCI	CTTAAG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeI	CATATG	1 cut(s)	146
NdeII	GATC	4 cut(s)	210, 708, 737, 755
NlaIII	CATG	7 cut(s)	20, 193, 203, 457, 493, 535, 631
NlaIV	GGNNCC	2 cut(s)	372, 643
NmuCI	GTSAC	1 cut(s)	75
NspI	RCATGY	2 cut(s)	203, 493
PagI	TCATGA	3 cut(s)	16, 189, 453
PfeI	GAWTC	1 cut(s)	186
PflFI	GACNNNGTC	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	415
Ple19I	CGATCG	1 cut(s)	711
PsiI	TTATAA	1 cut(s)	467
Psp1406I	AACGTT	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	372, 643
PsyI	GACNNNGTC	1 cut(s)	339
PvuI	CGATCG	1 cut(s)	711
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	6 cut(s)	222, 347, 360, 446, 522, 696
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	4 cut(s)	210, 708, 737, 755
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	15, 92, 230, 305, 465, 613, 643
SfcI	CTRYAG	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	8, 445
SmoI	CTYRAG	2 cut(s)	8, 445
Sse9I	AATT	3 cut(s)	21, 348, 722
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	3 cut(s)	155, 356, 677
TaaI	ACNGT	3 cut(s)	141, 397, 422
TaiI	ACGT	2 cut(s)	92, 305
TaqI	TCGA	2 cut(s)	134, 392
TasI	AATT	3 cut(s)	21, 348, 722
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	6 cut(s)	222, 347, 360, 446, 522, 696
Tru9I	TTAA	6 cut(s)	222, 347, 360, 446, 522, 696
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	5 cut(s)	5, 33, 206, 229, 559
TspGWI	ACGGA	2 cut(s)	198, 668
TspRI	CASTG	1 cut(s)	87
Tth111I	GACNNNGTC	1 cut(s)	339
Vha464I	CTTAAG	1 cut(s)	445
VneI	GTGCAC	1 cut(s)	150
XceI	RCATGY	2 cut(s)	203, 493
XspI	CTAG	3 cut(s)	155, 356, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.