Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0018738

Physical Location & Seq

Genomic Coordinates Reverse (-)

22356924 .. 22358739

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20970.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCAACATCAATATCTGGGCAACTCATGGATGCCATGGTACCTGAAAAATGGAATCCTTAAGCTTTTTTGCAGTGTCGAATTAACTACTGCAAACAAAGGTGCTGAAAAAAGCTTCACAAGAAAAAGAAGGGAAAAAACTACAAATTTAAAACATAAATATTCATCAATCATCAGCAGCAGAATGCAGTTCTTGAATACCGAACAACTGGCTTTCATATTCGGTCTCTTAGGTAACATTGTATCATTCATGGTGTTTTTGGCGCCAATACCAACGTTTTACACAATATACAAGAAGAAATCATCGAAGGGGTTCCAATCCATACCTTACGTGGTTGCCCTACTCAGTGCAACTCTATTGTTGTATTATGGATTCCTCAAGACAAATGCTTATTTGATCGTCAGCATCAACGGCATTGGAATCGTTATCGAAGTTACTTACCTCATCCTCTACATTGTATACGCATCCAAGAAGGACAAGATTACTACACTGAGTTTGATCCTGCTAGTAAATGTAGCCGCTTTCGGGTTGGTGCTGGCAGTCACCGTCTTCCTTCTTGGAGGGACAGCACGCATTTGCGCTGTTGGATGGATTTGTGCCGTGTTTAACATTGCTGTATTTGCTGCTCCTCTAAGCATTATGAGGCAAGTAATAAGAACCAAAAGTGTGGAATTCATGCCATTTTCTTTGTCCCTTTTCCTGACACTTTGTGCCACCATGTGGTTCTTCTACGGATTATTCACAAAGGATTACTACATTGCATTACCAAACGTGTTAGGGTTTCTGTTTGGCGTCGCCCAAATGATCCTATACATGACATACAAGAATTCAGGGAAAGATGTCGAAGCGAAAAAGAGTACTATGGAGATGAAGAAGTTGAGCTCCACCAACCGTCCAAATTTGACGGGCAGTGTGAGCAAAAATCCAAGATCAGATGAACTTAAGCAGACTACGGATGTCTATGAATCAAACGATGAACACGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0012505 GO:0012506 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031982 GO:0031984 GO:0032588 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046903 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071836 GO:0071944 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

329

Amino Acids

37.01

Weight (kDa)

9.65

Isoelectric Point (pI)

28.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39060
fragaria_vesca	FvH4_6g01150
malus_domestica	MD04G1236000.v1.1 MD12G1255000.v1.1
prunus_persica	Prupe.2G245600_v2.0.a1 Prupe.6G355900_v2.0.a1 Prupe.6G355900_v2.0.a1
pyrus_communis	pycom04g20970 pycom12g23360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	39, 262
AccB7I	CCANNNNNTGG	1 cut(s)	720
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	1 cut(s)	519
AclI	AACGTT	1 cut(s)	275
AclWI	GGATC	2 cut(s)	493, 799
AcsI	RAATTY	4 cut(s)	145, 671, 826, 898
AcyI	GRCGYC	2 cut(s)	263, 792
AdeI	CACNNNGTG	2 cut(s)	710, 720
AfaI	GTAC	2 cut(s)	41, 859
AfiI	CCNNNNNNNGG	2 cut(s)	525, 720
AflII	CTTAAG	2 cut(s)	59, 941
AflIII	ACRYGT	2 cut(s)	771, 979
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	3 cut(s)	64, 114, 882
AluI	AGCT	3 cut(s)	64, 114, 882
Alw21I	GWGCWC	1 cut(s)	884
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	493, 799
ApeKI	GCWGC	2 cut(s)	177, 623
ApoI	RAATTY	4 cut(s)	145, 671, 826, 898
Asp700I	GAANNNNTTC	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	265, 581
AsuHPI	GGTGA	1 cut(s)	535
BanI	GGYRCC	2 cut(s)	39, 262
BanII	GRGCYC	1 cut(s)	884
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	884
BbvI	GCAGC	2 cut(s)	189, 610
BccI	CCATC	1 cut(s)	582
BceAI	ACGGC	2 cut(s)	427, 584
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	506
BfoI	RGCGCY	1 cut(s)	266
BfrI	CTTAAG	2 cut(s)	59, 941
BisI	GCNGC	3 cut(s)	178, 519, 624
BlsI	GCNGC	3 cut(s)	179, 520, 625
BmcAI	AGTACT	1 cut(s)	859
BmiI	GGNNCC	3 cut(s)	41, 264, 314
BmsI	GCATC	3 cut(s)	21, 414, 473
BpiI	GAAGAC	1 cut(s)	541
BpuEI	CTTGAG	1 cut(s)	362
BsaAI	YACGTR	2 cut(s)	331, 982
BsaHI	GRCGYC	2 cut(s)	263, 792
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 720
Bse1I	ACTGG	1 cut(s)	213
Bse3DI	GCAATG	2 cut(s)	609, 756
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	5 cut(s)	36, 444, 464, 593, 961
BseLI	CCNNNNNNNGG	2 cut(s)	525, 720
BseMI	GCAATG	2 cut(s)	609, 756
BseMII	CTCAG	2 cut(s)	358, 482
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	2 cut(s)	189, 610
BshNI	GGYRCC	2 cut(s)	39, 262
BsiHKAI	GWGCWC	1 cut(s)	884
BslFI	GGGAC	2 cut(s)	577, 676
BslI	CCNNNNNNNGG	2 cut(s)	525, 720
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	2 cut(s)	577, 676
BsmI	GAATGC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp143I	GATC	4 cut(s)	396, 498, 804, 929
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	1 cut(s)	519
BspCNI	CTCAG	2 cut(s)	357, 483
BspLI	GGNNCC	3 cut(s)	41, 264, 314
BspPI	GGATC	2 cut(s)	493, 799
BspT107I	GGYRCC	2 cut(s)	39, 262
BspTI	CTTAAG	2 cut(s)	59, 941
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	2 cut(s)	609, 756
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	4 cut(s)	396, 498, 804, 929
BssNAI	GTATAC	1 cut(s)	460
BssNI	GRCGYC	2 cut(s)	263, 792
BssT1I	CCWWGG	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	460
Bst4CI	ACNGT	2 cut(s)	547, 893
BstACI	GRCGYC	2 cut(s)	263, 792
BstAFI	CTTAAG	2 cut(s)	59, 941
BstBAI	YACGTR	2 cut(s)	331, 982
BstC8I	GCNNGC	2 cut(s)	537, 571
BstDEI	CTNAG	4 cut(s)	229, 344, 491, 632
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	5 cut(s)	36, 444, 464, 593, 961
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	2 cut(s)	265, 581
BstKTI	GATC	4 cut(s)	399, 501, 807, 932
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	4 cut(s)	396, 498, 804, 929
BstMWI	GCNNNNNNNGC	3 cut(s)	411, 620, 915
BstV1I	GCAGC	2 cut(s)	189, 610
BstV2I	GAAGAC	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstZ17I	GTATAC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	5 cut(s)	36, 444, 464, 593, 961
BtsI	GCAGTG	2 cut(s)	79, 916
BtsIMutI	CAGTG	4 cut(s)	79, 352, 488, 916
Cac8I	GCNNGC	2 cut(s)	537, 571
CfoI	GCGC	2 cut(s)	265, 581
CseI	GACGC	1 cut(s)	781
Csp6I	GTAC	2 cut(s)	40, 858
CviAII	CATG	6 cut(s)	27, 36, 250, 676, 718, 814
CviJI	RGCY	5 cut(s)	64, 114, 212, 518, 882
CviKI_1	RGCY	5 cut(s)	64, 114, 212, 518, 882
CviQI	GTAC	2 cut(s)	40, 858
DdeI	CTNAG	4 cut(s)	229, 344, 491, 632
DinI	GGCGCC	1 cut(s)	264
DpnI	GATC	4 cut(s)	398, 500, 806, 931
DpnII	GATC	4 cut(s)	396, 498, 804, 929
DraI	TTTAAA	1 cut(s)	150
DraIII	CACNNNGTG	2 cut(s)	710, 720
Ecl136II	GAGCTC	1 cut(s)	882
Eco130I	CCWWGG	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	884
Eco31I	GGTCTC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	882
EcoICRI	GAGCTC	1 cut(s)	882
EcoRI	GAATTC	2 cut(s)	671, 826
EcoT14I	CCWWGG	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	884
EgeI	GGCGCC	1 cut(s)	264
EheI	GGCGCC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	6 cut(s)	30, 39, 253, 679, 721, 817
FaqI	GGGAC	2 cut(s)	577, 676
FatI	CATG	6 cut(s)	26, 35, 249, 675, 717, 813
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	178, 519, 624
FokI	GGATG	5 cut(s)	43, 431, 451, 600, 968
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	3 cut(s)	178, 519, 624
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	2 cut(s)	264, 580
GluI	GCNGC	3 cut(s)	178, 519, 624
HaeII	RGCGCY	1 cut(s)	266
HgaI	GACGC	1 cut(s)	781
HhaI	GCGC	2 cut(s)	265, 581
Hin1I	GRCGYC	2 cut(s)	263, 792
Hin1II	CATG	6 cut(s)	30, 39, 253, 679, 721, 817
Hin6I	GCGC	2 cut(s)	263, 579
HinP1I	GCGC	2 cut(s)	263, 579
HindIII	AAGCTT	2 cut(s)	62, 112
HinfI	GANTC	4 cut(s)	54, 372, 420, 965
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	934
Hpy188III	TCNNGA	3 cut(s)	193, 379, 700
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	797
HpyAV	CCTTC	4 cut(s)	123, 301, 466, 563
HpyCH4III	ACNGT	2 cut(s)	547, 893
HpyCH4IV	ACGT	4 cut(s)	275, 330, 771, 981
HpyCH4V	TGCA	6 cut(s)	4, 72, 92, 187, 350, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	411, 620, 915
HpyF3I	CTNAG	4 cut(s)	229, 344, 491, 632
HpySE526I	ACGT	4 cut(s)	275, 330, 771, 981
Hsp92I	GRCGYC	2 cut(s)	263, 792
Hsp92II	CATG	6 cut(s)	30, 39, 253, 679, 721, 817
HspAI	GCGC	2 cut(s)	263, 579
KasI	GGCGCC	1 cut(s)	262
KpnI	GGTACC	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	396, 498, 804, 929
LmnI	GCTCC	2 cut(s)	631, 887
LpnPI	CCDG	7 cut(s)	2, 56, 194, 515, 521, 713, 816
Lsp1109I	GCAGC	2 cut(s)	189, 610
LweI	GCATC	3 cut(s)	21, 414, 473
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	4 cut(s)	275, 330, 771, 981
MaeIII	GTNAC	3 cut(s)	233, 433, 541
MalI	GATC	4 cut(s)	398, 500, 806, 931
MboI	GATC	4 cut(s)	396, 498, 804, 929
MboII	GAAGA	4 cut(s)	307, 541, 718, 883
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	5 cut(s)	80, 145, 671, 826, 898
Mly113I	GGCGCC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	6 cut(s)	386, 452, 458, 554, 636, 639
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	5 cut(s)	60, 83, 149, 606, 942
MspCI	CTTAAG	2 cut(s)	59, 941
Mva1269I	GAATGC	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	411, 620, 915
NarI	GGCGCC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	4 cut(s)	396, 498, 804, 929
NlaIII	CATG	6 cut(s)	30, 39, 253, 679, 721, 817
NlaIV	GGNNCC	3 cut(s)	41, 264, 314
NmuCI	GTSAC	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	978
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	4 cut(s)	54, 372, 420, 965
PflMI	CCANNNNNTGG	1 cut(s)	720
PkrI	GCNGC	3 cut(s)	179, 520, 625
PluTI	GGCGCC	1 cut(s)	266
Ppu21I	YACGTR	2 cut(s)	331, 982
Psp124BI	GAGCTC	1 cut(s)	884
Psp1406I	AACGTT	1 cut(s)	275
PspN4I	GGNNCC	3 cut(s)	41, 264, 314
RsaI	GTAC	2 cut(s)	41, 859
RsaNI	GTAC	2 cut(s)	40, 858
SacI	GAGCTC	1 cut(s)	884
SaqAI	TTAA	5 cut(s)	60, 83, 149, 606, 942
SatI	GCNGC	3 cut(s)	178, 519, 624
Sau3AI	GATC	4 cut(s)	396, 498, 804, 929
ScaI	AGTACT	1 cut(s)	859
SduI	GDGCHC	1 cut(s)	884
SfaNI	GCATC	3 cut(s)	21, 414, 473
SfoI	GGCGCC	1 cut(s)	264
SmlI	CTYRAG	3 cut(s)	59, 377, 941
SmoI	CTYRAG	3 cut(s)	59, 377, 941
Sse9I	AATT	5 cut(s)	80, 145, 671, 826, 898
SsiI	CCGC	1 cut(s)	519
SspDI	GGCGCC	1 cut(s)	262
SspI	AATATT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	884
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	547, 893
TaiI	ACGT	4 cut(s)	278, 333, 774, 984
TaqI	TCGA	4 cut(s)	78, 305, 429, 843
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	5 cut(s)	80, 145, 671, 826, 898
TatI	WGTACW	1 cut(s)	857
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	4 cut(s)	54, 372, 420, 965
Tru1I	TTAA	5 cut(s)	60, 83, 149, 606, 942
Tru9I	TTAA	5 cut(s)	60, 83, 149, 606, 942
TscAI	CASTG	4 cut(s)	79, 352, 495, 916
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	2 cut(s)	177, 623
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	7 cut(s)	153, 205, 238, 664, 884, 951, 978
TspGWI	ACGGA	2 cut(s)	747, 968
TspRI	CASTG	4 cut(s)	79, 352, 495, 916
Van91I	CCANNNNNTGG	1 cut(s)	720
Vha464I	CTTAAG	2 cut(s)	59, 941
XapI	RAATTY	4 cut(s)	145, 671, 826, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	1 cut(s)	506
ZrmI	AGTACT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.