Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0018738

Physical Location & Seq

Genomic Coordinates Reverse (-)

30204408 .. 30206428

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G355900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAAGTTCTTGAGTAATGAACAACTGGCTTTCGTATTCGGTCTCTTGGGTAACATTGTGTCATTCATGGTATTCTTGGCGCCAATACCAACGTTTTACACAATATACAAGAAGAAATCATCCAAAGGCTTCCAATCCATACCTTATGTGGTTGCCCTTCTTAGTGCAATGCTGCTATTGTATTATGGTGTCCTCAAGACCAATGCCTTTTTGATCATCAGCATCAATGGCATCGGATGCGTTATAGAAATTATTTACCTCATATTCTACATTGTACATGCATCCAAGAAGGACAAGATTACTACAATGAGTTTGATACTGCTGGTGAACGTAGCGGCCTTTGGGTTGGTGATGGCGGTCACACTCTTTCTTCTAGGAGAAGCCAAGCGTGTTAGCGCCGTTGGATGGATGTGTGCTGTGTTTAACATTGCTGTCTTTGCCGCCCCTTTAAGCATCGTGAGGCAAGTAATAAGAACCAAGAGTGTAGAATACATGCCATTTTCTTTGTCATTTTTCCTCACACTTTGTGCAACCATGTGGTTCTTCTACGGCCTCTTCACAAAGGATTATTACATTGCATTACCAAATGTGTTGGGATTCTTATTAGGCGTCGCTCAAATGATCCTCTACCTCAAATACAAGAATTCAGGGAAAAATGATGCAGAAAATAAAGGCAGTCAAGAGATGAAGAAGTTTCATGAGCCGCAACCGCCGGAAGCTGATGCGCAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0012505 GO:0012506 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031982 GO:0031984 GO:0032588 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046903 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071836 GO:0071944 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

245

Amino Acids

27.33

Weight (kDa)

9.31

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39060
fragaria_vesca	FvH4_6g01150
malus_domestica	MD04G1236000.v1.1 MD12G1255000.v1.1
prunus_persica	Prupe.2G245600_v2.0.a1 Prupe.6G355900_v2.0.a1 Prupe.6G355900_v2.0.a1
pyrus_communis	pycom04g20970 pycom12g23360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	726
AccB1I	GGYRCC	1 cut(s)	79
AciI	CCGC	5 cut(s)	335, 356, 441, 704, 710
AclI	AACGTT	1 cut(s)	92
AclWI	GGATC	1 cut(s)	616
AcsI	RAATTY	1 cut(s)	643
AcyI	GRCGYC	2 cut(s)	80, 609
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	405
AluBI	AGCT	1 cut(s)	719
AluI	AGCT	1 cut(s)	719
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	616
AoxI	GGCC	2 cut(s)	336, 550
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	643
AspLEI	GCGC	3 cut(s)	82, 398, 727
AsuHPI	GGTGA	2 cut(s)	337, 361
BanI	GGYRCC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	346, 399
BceAI	ACGGC	2 cut(s)	383, 565
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	374
BfoI	RGCGCY	2 cut(s)	83, 399
BisI	GCNGC	4 cut(s)	173, 336, 441, 704
BlsI	GCNGC	4 cut(s)	174, 337, 442, 705
BmiI	GGNNCC	1 cut(s)	81
BmsI	GCATC	7 cut(s)	227, 231, 240, 290, 462, 649, 712
BpuEI	CTTGAG	2 cut(s)	31, 179
BsaHI	GRCGYC	2 cut(s)	80, 609
BsaI	GGTCTC	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	3 cut(s)	174, 426, 573
BseGI	GGATG	5 cut(s)	119, 242, 281, 410, 414
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	3 cut(s)	174, 426, 573
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	159
BshFI	GGCC	2 cut(s)	338, 552
BshNI	GGYRCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	338, 552
Bso31I	GGTCTC	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	213, 621
BspACI	CCGC	5 cut(s)	335, 356, 441, 704, 710
BspANI	GGCC	2 cut(s)	338, 552
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	3 cut(s)	174, 426, 573
BsrGI	TGTACA	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	213, 621
BssNI	GRCGYC	2 cut(s)	80, 609
Bst6I	CTCTTC	1 cut(s)	560
BstACI	GRCGYC	2 cut(s)	80, 609
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	5 cut(s)	119, 242, 281, 410, 414
BstH2I	RGCGCY	2 cut(s)	83, 399
BstHHI	GCGC	3 cut(s)	82, 398, 727
BstKTI	GATC	2 cut(s)	216, 624
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	213, 621
BstMWI	GCNNNNNNNGC	4 cut(s)	228, 237, 437, 709
BstNSI	RCATGY	2 cut(s)	281, 496
BstV1I	GCAGC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	338, 552
BtsCI	GGATG	5 cut(s)	119, 242, 281, 410, 414
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	1 cut(s)	734
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	3 cut(s)	82, 398, 727
CseI	GACGC	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	5 cut(s)	67, 278, 493, 535, 698
CviJI	RGCY	7 cut(s)	29, 129, 338, 383, 552, 703, 719
CviKI_1	RGCY	7 cut(s)	29, 129, 338, 383, 552, 703, 719
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	161
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	2 cut(s)	215, 623
DpnII	GATC	2 cut(s)	213, 621
DraIII	CACNNNGTG	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	643
EcoT22I	ATGCAT	1 cut(s)	283
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
FaeI	CATG	5 cut(s)	70, 281, 496, 538, 701
FatI	CATG	5 cut(s)	66, 277, 492, 534, 697
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	173, 336, 441, 704
FokI	GGATG	5 cut(s)	106, 249, 268, 417, 421
Fsp4HI	GCNGC	4 cut(s)	173, 336, 441, 704
FspBI	CTAG	1 cut(s)	374
FspI	TGCGCA	1 cut(s)	726
GlaI	GCGC	3 cut(s)	81, 397, 726
GluI	GCNGC	4 cut(s)	173, 336, 441, 704
HaeII	RGCGCY	2 cut(s)	83, 399
HaeIII	GGCC	2 cut(s)	338, 552
HapII	CCGG	1 cut(s)	713
HgaI	GACGC	1 cut(s)	598
HhaI	GCGC	3 cut(s)	82, 398, 727
Hin1I	GRCGYC	2 cut(s)	80, 609
Hin1II	CATG	5 cut(s)	70, 281, 496, 538, 701
Hin6I	GCGC	3 cut(s)	80, 396, 725
HinP1I	GCGC	3 cut(s)	80, 396, 725
HinfI	GANTC	1 cut(s)	597
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	2 cut(s)	337, 361
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	5 cut(s)	10, 196, 457, 680, 698
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	2 cut(s)	167, 283
HpyCH4IV	ACGT	2 cut(s)	92, 330
HpyCH4V	TGCA	5 cut(s)	167, 281, 530, 578, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	228, 237, 437, 709
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	92, 330
Hsp92I	GRCGYC	2 cut(s)	80, 609
Hsp92II	CATG	5 cut(s)	70, 281, 496, 538, 701
HspAI	GCGC	3 cut(s)	80, 396, 725
KasI	GGCGCC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	213, 621
LpnPI	CCDG	4 cut(s)	11, 308, 633, 726
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	7 cut(s)	227, 231, 240, 290, 462, 649, 712
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	2 cut(s)	92, 330
MaeIII	GTNAC	2 cut(s)	50, 358
MalI	GATC	2 cut(s)	215, 623
MboI	GATC	2 cut(s)	213, 621
MboII	GAAGA	5 cut(s)	124, 362, 535, 547, 700
MluCI	AATT	2 cut(s)	249, 643
Mly113I	GGCGCC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	203, 269, 453, 527, 563, 635, 641
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	2 cut(s)	423, 449
MspI	CCGG	1 cut(s)	713
MwoI	GCNNNNNNNGC	4 cut(s)	228, 237, 437, 709
NarI	GGCGCC	1 cut(s)	80
NdeII	GATC	2 cut(s)	213, 621
NlaIII	CATG	5 cut(s)	70, 281, 496, 538, 701
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	358
NsbI	TGCGCA	1 cut(s)	726
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	2 cut(s)	281, 496
PagI	TCATGA	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	597
PkrI	GCNGC	4 cut(s)	174, 337, 442, 705
PluTI	GGCGCC	1 cut(s)	83
Psp1406I	AACGTT	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	81
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	423, 449
SatI	GCNGC	4 cut(s)	173, 336, 441, 704
Sau3AI	GATC	2 cut(s)	213, 621
SetI	ASST	6 cut(s)	95, 145, 261, 333, 633, 721
SfaNI	GCATC	7 cut(s)	227, 231, 240, 290, 462, 649, 712
SfoI	GGCGCC	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	10, 194
SmoI	CTYRAG	2 cut(s)	10, 194
Sse9I	AATT	2 cut(s)	249, 643
SsiI	CCGC	5 cut(s)	335, 356, 441, 704, 710
SspDI	GGCGCC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	374
TaiI	ACGT	2 cut(s)	95, 333
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	249, 643
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	3 cut(s)	338, 443, 706
TfiI	GAWTC	1 cut(s)	597
Tru1I	TTAA	2 cut(s)	423, 449
Tru9I	TTAA	2 cut(s)	423, 449
TscAI	CASTG	1 cut(s)	734
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	5 cut(s)	17, 33, 55, 686, 701
TspRI	CASTG	1 cut(s)	734
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	2 cut(s)	281, 496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.