Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0018738

Physical Location & Seq

Genomic Coordinates Reverse (-)

32322191 .. 32323883

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1255000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCGGTTCTTGAATACTGAACAACTGGCTTTTATATTCGGTCTCTTAGGTTTTAACATTGTGTCATTCATGACGTTCTTGGCGCCAATACCAACGTTTTACACAATATACAAGAAGAAATCATCGAAAGGGTTTCAATCCATACCTTATGTGATTGCCCTACTAAGTGCGACTTTATTGTTGTATTATGGAGTCCTCAAGACAAATGCTTATTTGATCATCAGCATCAACAGCATCGGAATCGTTATAGAAGTTACTTACCTGATCCTCTACATTGTATACGCATCCAAGAATGACAAGATTACTACATTGATTTGGATCCTGCTAGTAAATGTAGCCGCTTTAGGGTTGGTGCTGGCAGTCACCTTCTTCCTTCTTGGAGGGACAGTGCGCATAAGTGCCGTTGGATGGATTTGTGCCGTGTTTAACATTGCTGTATTTGCTGCTCCTCTAAGCATTATGAGGCAAGTAATAAGAACCAAAAGTGTGGAATTCATGCCATTTTCTTTGTCCTTTTTCCTGACACTTTGTGCCACCATGTGGTTCTTCTACGGATTTTTTACAAAAGATTACTACATTGCATTACCAAACGTATTAGGGTTTCTCTTGGGCATTGCCCAAATGATCCTATACATGACATACAAGACTTCAGGAAACAATGTCGAAGAGAAAAAGAGTACTCAGGAGATGAAGAAGTTGAGCTCGACCAATCGTCCAAAGTTGGTGCGCAGCGTGAGTGAATATCCAAGATCAGATAAACTAAATCAGATTACGTATGTCTACGAAGCAAACGATGAACACGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0012505 GO:0012506 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031982 GO:0031984 GO:0032588 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046903 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071836 GO:0071944 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

269

Amino Acids

30.38

Weight (kDa)

9.47

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	13 - 98	2e-22	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	134 - 216	7.4e-29	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39060
fragaria_vesca	FvH4_6g01150
malus_domestica	MD04G1236000.v1.1 MD12G1255000.v1.1
prunus_persica	Prupe.2G245600_v2.0.a1 Prupe.6G355900_v2.0.a1 Prupe.6G355900_v2.0.a1
pyrus_communis	pycom04g20970 pycom12g23360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	392, 728
AccB1I	GGYRCC	1 cut(s)	82
AccB7I	CCANNNNNTGG	1 cut(s)	540
AccI	GTMKAC	2 cut(s)	279, 780
AciI	CCGC	2 cut(s)	4, 339
AclI	AACGTT	1 cut(s)	95
AclWI	GGATC	4 cut(s)	259, 313, 326, 619
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	633
AcyI	GRCGYC	1 cut(s)	83
AdeI	CACNNNGTG	2 cut(s)	530, 540
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	3 cut(s)	345, 408, 540
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	2 cut(s)	13, 137
AhdI	GACNNNNNGTC	1 cut(s)	711
AluBI	AGCT	1 cut(s)	702
AluI	AGCT	1 cut(s)	702
Alw21I	GWGCWC	1 cut(s)	704
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	4 cut(s)	259, 313, 326, 619
ApeKI	GCWGC	2 cut(s)	443, 729
ApoI	RAATTY	1 cut(s)	491
AspLEI	GCGC	3 cut(s)	85, 393, 729
AsuHPI	GGTGA	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	704
BbvI	GCAGC	2 cut(s)	430, 741
BccI	CCATC	1 cut(s)	402
BceAI	ACGGC	2 cut(s)	386, 404
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	3 cut(s)	339, 444, 730
BlsI	GCNGC	3 cut(s)	340, 445, 731
BmcAI	AGTACT	1 cut(s)	679
BmeRI	GACNNNNNGTC	1 cut(s)	711
BmiI	GGNNCC	2 cut(s)	84, 320
BmsI	GCATC	3 cut(s)	234, 243, 293
BpuEI	CTTGAG	1 cut(s)	182
BsaAI	YACGTR	2 cut(s)	774, 802
BsaBI	GATNNNNATC	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	345, 408, 540
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	3 cut(s)	429, 576, 612
Bse8I	GATNNNNATC	1 cut(s)	317
BseGI	GGATG	2 cut(s)	284, 413
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	3 cut(s)	345, 408, 540
BseMI	GCAATG	3 cut(s)	429, 576, 612
BseMII	CTCAG	1 cut(s)	695
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	430, 741
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	704
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	345, 408, 540
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	397
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	5 cut(s)	216, 264, 318, 624, 749
BspACI	CCGC	2 cut(s)	4, 339
BspCNI	CTCAG	1 cut(s)	694
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	84, 320
BspPI	GGATC	4 cut(s)	259, 313, 326, 619
BspT107I	GGYRCC	1 cut(s)	82
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	3 cut(s)	429, 576, 612
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	5 cut(s)	216, 264, 318, 624, 749
BssNAI	GTATAC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	83
Bst1107I	GTATAC	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	660
BstACI	GRCGYC	1 cut(s)	83
BstBAI	YACGTR	2 cut(s)	774, 802
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	4 cut(s)	46, 164, 452, 681
BstF5I	GGATG	2 cut(s)	284, 413
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	3 cut(s)	85, 393, 729
BstKTI	GATC	5 cut(s)	219, 267, 321, 627, 752
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	5 cut(s)	216, 264, 318, 624, 749
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 440
BstSNI	TACGTA	1 cut(s)	774
BstV1I	GCAGC	2 cut(s)	430, 741
BstX2I	RGATCY	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	318
BstZ17I	GTATAC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	284, 413
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	357
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	3 cut(s)	85, 393, 729
Csp6I	GTAC	1 cut(s)	678
CviAII	CATG	4 cut(s)	70, 496, 538, 634
CviJI	RGCY	3 cut(s)	29, 338, 702
CviKI_1	RGCY	3 cut(s)	29, 338, 702
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	4 cut(s)	46, 164, 452, 681
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	5 cut(s)	218, 266, 320, 626, 751
DpnII	GATC	5 cut(s)	216, 264, 318, 624, 749
DraIII	CACNNNGTG	2 cut(s)	530, 540
DriI	GACNNNNNGTC	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	660
Eam1105I	GACNNNNNGTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	702
Eco105I	TACGTA	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	704
Eco31I	GGTCTC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	702
Eco57I	CTGAAG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	702
EcoRI	GAATTC	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	704
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
FaeI	CATG	4 cut(s)	73, 499, 541, 637
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	4 cut(s)	69, 495, 537, 633
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	2 cut(s)	279, 780
Fnu4HI	GCNGC	3 cut(s)	339, 444, 730
FokI	GGATG	2 cut(s)	271, 420
FriOI	GRGCYC	1 cut(s)	704
Fsp4HI	GCNGC	3 cut(s)	339, 444, 730
FspAI	RTGCGCAY	1 cut(s)	392
FspBI	CTAG	1 cut(s)	326
FspI	TGCGCA	2 cut(s)	392, 728
GlaI	GCGC	3 cut(s)	84, 392, 728
GluI	GCNGC	3 cut(s)	339, 444, 730
HaeII	RGCGCY	1 cut(s)	86
HhaI	GCGC	3 cut(s)	85, 393, 729
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	73, 499, 541, 637
Hin6I	GCGC	3 cut(s)	83, 391, 727
HinP1I	GCGC	3 cut(s)	83, 391, 727
HinfI	GANTC	2 cut(s)	192, 240
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	280, 781
Hpy188I	TCNGA	3 cut(s)	239, 754, 768
Hpy188III	TCNNGA	6 cut(s)	10, 70, 199, 520, 651, 683
Hpy8I	GTNNAC	2 cut(s)	280, 781
HpyAV	CCTTC	2 cut(s)	376, 383
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	5 cut(s)	74, 95, 591, 773, 801
HpyCH4V	TGCA	1 cut(s)	581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 440
HpyF3I	CTNAG	4 cut(s)	46, 164, 452, 681
HpySE526I	ACGT	5 cut(s)	74, 95, 591, 773, 801
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	73, 499, 541, 637
HspAI	GCGC	3 cut(s)	83, 391, 727
KasI	GGCGCC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	5 cut(s)	216, 264, 318, 624, 749
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	7 cut(s)	11, 275, 335, 341, 533, 636, 668
Lsp1109I	GCAGC	2 cut(s)	430, 741
LweI	GCATC	3 cut(s)	234, 243, 293
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	5 cut(s)	74, 95, 591, 773, 801
MaeIII	GTNAC	2 cut(s)	253, 361
MalI	GATC	5 cut(s)	218, 266, 320, 626, 751
MboI	GATC	5 cut(s)	216, 264, 318, 624, 749
MboII	GAAGA	5 cut(s)	127, 361, 538, 677, 703
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	1 cut(s)	491
Mly113I	GGCGCC	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	5 cut(s)	206, 278, 374, 456, 459
MseI	TTAA	2 cut(s)	54, 426
MwoI	GCNNNNNNNGC	2 cut(s)	231, 440
NarI	GGCGCC	1 cut(s)	83
NdeII	GATC	5 cut(s)	216, 264, 318, 624, 749
NlaIII	CATG	4 cut(s)	73, 499, 541, 637
NlaIV	GGNNCC	2 cut(s)	84, 320
NmuCI	GTSAC	1 cut(s)	361
NsbI	TGCGCA	2 cut(s)	392, 728
PagI	TCATGA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	789, 798
PfeI	GAWTC	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	340, 445, 731
PleI	GAGTC	1 cut(s)	200
PluTI	GGCGCC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	200
Ppu21I	YACGTR	2 cut(s)	774, 802
Psp124BI	GAGCTC	1 cut(s)	704
Psp1406I	AACGTT	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	84, 320
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
SacI	GAGCTC	1 cut(s)	704
SaqAI	TTAA	2 cut(s)	54, 426
SatI	GCNGC	3 cut(s)	339, 444, 730
Sau3AI	GATC	5 cut(s)	216, 264, 318, 624, 749
ScaI	AGTACT	1 cut(s)	679
SchI	GAGTC	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	704
SfaNI	GCATC	3 cut(s)	234, 243, 293
SfoI	GGCGCC	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SnaBI	TACGTA	1 cut(s)	774
Sse9I	AATT	1 cut(s)	491
SsiI	CCGC	2 cut(s)	4, 339
SspDI	GGCGCC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	704
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	5 cut(s)	77, 98, 594, 776, 804
TaqI	TCGA	3 cut(s)	125, 663, 704
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	1 cut(s)	491
TatI	WGTACW	1 cut(s)	677
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	54, 426
Tru9I	TTAA	2 cut(s)	54, 426
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	443, 729
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	58, 484, 704
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	393
Van91I	CCANNNNNTGG	1 cut(s)	540
XapI	RAATTY	1 cut(s)	491
XmiI	GTMKAC	2 cut(s)	279, 780
XspI	CTAG	1 cut(s)	326
ZrmI	AGTACT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.