Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0018738

Physical Location & Seq

Genomic Coordinates Reverse (-)

31488876 .. 31490819

Gene Structure 1944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1236000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGTTCTTGAATACCGAACAACTGGCTTTCGTATTCGGTCTCTTAGGTAACATTGTATCATTCATGGTGTTTTTGGCGCCAATACCAACGTTTTACACAATATACAAGAAGAAATCATCGAAAGGGTTCCAATCCATACCTTACGTGGTTGCCCTACTCAGTGCAACTCTATTGTTGTATTATGGAGTCCTCAAGACAAATGCTTATTTGATCGTCAGCATCAACGTCATCGGAATCGTTATCGAAGTTACTTACCTCATCCTCTACATTGTATACGCATCCAAGAAGGACAAGATTACTACACTGAGTTTGATCCTGCTAGTAAATGTAGCCGCTTTCGGGTTGGTGCTGGCAGTCACCGTCTTCCTCCTTGGAGGGACAGCGCGCGTTTGCGCTGTTGGATGGATTTGTGCCGTGTTTAACATTGCTGTATTTGCTGCTCCTCTAAGCATTATGAGGCAAGTAATAAGAACCAAAAGTGTGGAATTCATGCCATTTTCTTTGTCCCTTTTCCTGACACTTTGTGCCACCATGTGGTTCTTCTACGGACTATTCACAAAGGATTACTACATTGCATTACCAAACGTGTTAGGGTTTCTATTTGGCATCGCCCAAATGATCCTATACATGACATACAAGAATTCAGGGAAAGATGTCGAAGTGAAAAAGAGTACTATGGAGATGAAGAAGTTGAGCTCCACCAACCGTCCAAATTTGACGGGCAGTGTGAACAAAAATTCAAGGTCAGATGAACTTAAGCAGACTACGGATGTCTATGAATCAAACGATGAACACGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0012505 GO:0012506 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031982 GO:0031984 GO:0032588 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046903 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071836 GO:0071944 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

268

Amino Acids

29.85

Weight (kDa)

9.34

Isoelectric Point (pI)

28.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	3.8e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	134 - 216	2e-29	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39060
fragaria_vesca	FvH4_6g01150
malus_domestica	MD04G1236000.v1.1 MD12G1255000.v1.1
prunus_persica	Prupe.2G245600_v2.0.a1 Prupe.6G355900_v2.0.a1 Prupe.6G355900_v2.0.a1
pyrus_communis	pycom04g20970 pycom12g23360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccB7I	CCANNNNNTGG	1 cut(s)	537
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	2 cut(s)	388, 390
AciI	CCGC	1 cut(s)	336
AclI	AACGTT	1 cut(s)	92
AclWI	GGATC	2 cut(s)	310, 616
AcsI	RAATTY	4 cut(s)	488, 643, 715, 739
AcyI	GRCGYC	1 cut(s)	80
AdeI	CACNNNGTG	2 cut(s)	527, 537
AfaI	GTAC	1 cut(s)	676
AfiI	CCNNNNNNNGG	2 cut(s)	342, 537
AflII	CTTAAG	1 cut(s)	758
AflIII	ACRYGT	2 cut(s)	588, 796
AgsI	TTSAA	2 cut(s)	13, 744
AluBI	AGCT	1 cut(s)	699
AluI	AGCT	1 cut(s)	699
Alw21I	GWGCWC	1 cut(s)	701
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	310, 616
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	4 cut(s)	488, 643, 715, 739
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	4 cut(s)	82, 388, 390, 398
AsuHPI	GGTGA	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	701
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	701
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	399
BceAI	ACGGC	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	758
BisI	GCNGC	2 cut(s)	336, 441
BlsI	GCNGC	2 cut(s)	337, 442
BmcAI	AGTACT	1 cut(s)	676
BmiI	GGNNCC	2 cut(s)	81, 131
BmsI	GCATC	3 cut(s)	231, 290, 618
BpiI	GAAGAC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	179
BsaAI	YACGTR	2 cut(s)	148, 799
BsaHI	GRCGYC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 537
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	2 cut(s)	426, 573
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	4 cut(s)	261, 281, 410, 778
BseLI	CCNNNNNNNGG	2 cut(s)	342, 537
BseMI	GCAATG	2 cut(s)	426, 573
BseMII	CTCAG	2 cut(s)	175, 299
BseNI	ACTGG	1 cut(s)	30
BsePI	GCGCGC	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	2 cut(s)	388, 390
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	701
BslFI	GGGAC	2 cut(s)	394, 493
BslI	CCNNNNNNNGG	2 cut(s)	342, 537
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	394, 493
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp143I	GATC	3 cut(s)	213, 315, 621
BspACI	CCGC	1 cut(s)	336
BspCNI	CTCAG	2 cut(s)	174, 300
BspFNI	CGCG	2 cut(s)	388, 390
BspLI	GGNNCC	2 cut(s)	81, 131
BspPI	GGATC	2 cut(s)	310, 616
BspT107I	GGYRCC	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	426, 573
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	373
BssHII	GCGCGC	1 cut(s)	386
BssMI	GATC	3 cut(s)	213, 315, 621
BssNAI	GTATAC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	373
Bst1107I	GTATAC	1 cut(s)	277
Bst4CI	ACNGT	2 cut(s)	364, 710
BstACI	GRCGYC	1 cut(s)	80
BstAFI	CTTAAG	1 cut(s)	758
BstBAI	YACGTR	2 cut(s)	148, 799
BstC8I	GCNNGC	2 cut(s)	354, 388
BstDEI	CTNAG	4 cut(s)	46, 161, 308, 449
BstF5I	GGATG	4 cut(s)	261, 281, 410, 778
BstFNI	CGCG	2 cut(s)	388, 390
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	4 cut(s)	82, 388, 390, 398
BstKTI	GATC	3 cut(s)	216, 318, 624
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	3 cut(s)	213, 315, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstUI	CGCG	2 cut(s)	388, 390
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	484
BstZ17I	GTATAC	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	595
BtsCI	GGATG	4 cut(s)	261, 281, 410, 778
BtsI	GCAGTG	1 cut(s)	733
BtsIMutI	CAGTG	3 cut(s)	169, 305, 733
Cac8I	GCNNGC	2 cut(s)	354, 388
CfoI	GCGC	4 cut(s)	82, 388, 390, 398
Csp6I	GTAC	1 cut(s)	675
CviAII	CATG	4 cut(s)	67, 493, 535, 631
CviJI	RGCY	3 cut(s)	29, 335, 699
CviKI_1	RGCY	3 cut(s)	29, 335, 699
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	4 cut(s)	46, 161, 308, 449
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	3 cut(s)	215, 317, 623
DpnII	GATC	3 cut(s)	213, 315, 621
DraIII	CACNNNGTG	2 cut(s)	527, 537
Ecl136II	GAGCTC	1 cut(s)	699
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	701
Eco31I	GGTCTC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	699
EcoICRI	GAGCTC	1 cut(s)	699
EcoRI	GAATTC	2 cut(s)	488, 643
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	701
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	4 cut(s)	70, 496, 538, 634
FaqI	GGGAC	2 cut(s)	394, 493
FatI	CATG	4 cut(s)	66, 492, 534, 630
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	336, 441
FokI	GGATG	4 cut(s)	248, 268, 417, 785
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	2 cut(s)	336, 441
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	4 cut(s)	81, 387, 389, 397
GluI	GCNGC	2 cut(s)	336, 441
HaeII	RGCGCY	1 cut(s)	83
HhaI	GCGC	4 cut(s)	82, 388, 390, 398
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	70, 496, 538, 634
Hin6I	GCGC	4 cut(s)	80, 386, 388, 396
HinP1I	GCGC	4 cut(s)	80, 386, 388, 396
HinfI	GANTC	3 cut(s)	189, 237, 782
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	2 cut(s)	277, 733
Hpy188I	TCNGA	2 cut(s)	236, 751
Hpy188III	TCNNGA	3 cut(s)	10, 196, 517
Hpy8I	GTNNAC	2 cut(s)	277, 733
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	2 cut(s)	364, 710
HpyCH4IV	ACGT	5 cut(s)	92, 147, 228, 588, 798
HpyCH4V	TGCA	3 cut(s)	4, 167, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	4 cut(s)	46, 161, 308, 449
HpySE526I	ACGT	5 cut(s)	92, 147, 228, 588, 798
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	4 cut(s)	70, 496, 538, 634
HspAI	GCGC	4 cut(s)	80, 386, 388, 396
KasI	GGCGCC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	213, 315, 621
LmnI	GCTCC	2 cut(s)	448, 704
LpnPI	CCDG	5 cut(s)	11, 332, 338, 530, 633
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	3 cut(s)	231, 290, 618
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	5 cut(s)	92, 147, 228, 588, 798
MaeIII	GTNAC	3 cut(s)	50, 250, 358
MalI	GATC	3 cut(s)	215, 317, 623
MboI	GATC	3 cut(s)	213, 315, 621
MboII	GAAGA	4 cut(s)	124, 358, 535, 700
MhlI	GDGCHC	1 cut(s)	701
MluCI	AATT	4 cut(s)	488, 643, 715, 739
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	203, 269, 275, 371, 380, 453, 456
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	423, 759
MspCI	CTTAAG	1 cut(s)	758
MvnI	CGCG	2 cut(s)	388, 390
MwoI	GCNNNNNNNGC	1 cut(s)	437
NarI	GGCGCC	1 cut(s)	80
NdeII	GATC	3 cut(s)	213, 315, 621
NlaIII	CATG	4 cut(s)	70, 496, 538, 634
NlaIV	GGNNCC	2 cut(s)	81, 131
NmuCI	GTSAC	1 cut(s)	358
PauI	GCGCGC	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	237, 782
PflMI	CCANNNNNTGG	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	337, 442
PleI	GAGTC	1 cut(s)	197
PluTI	GGCGCC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	197
Ppu21I	YACGTR	2 cut(s)	148, 799
Psp124BI	GAGCTC	1 cut(s)	701
Psp1406I	AACGTT	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	81, 131
PteI	GCGCGC	1 cut(s)	386
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
SacI	GAGCTC	1 cut(s)	701
SaqAI	TTAA	2 cut(s)	423, 759
SatI	GCNGC	2 cut(s)	336, 441
Sau3AI	GATC	3 cut(s)	213, 315, 621
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	701
SfaNI	GCATC	3 cut(s)	231, 290, 618
SfoI	GGCGCC	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	194, 758
SmoI	CTYRAG	2 cut(s)	194, 758
Sse9I	AATT	4 cut(s)	488, 643, 715, 739
SsiI	CCGC	1 cut(s)	336
SspDI	GGCGCC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	701
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	364, 710
TaiI	ACGT	5 cut(s)	95, 150, 231, 591, 801
TaqI	TCGA	3 cut(s)	122, 246, 660
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	488, 643, 715, 739
TatI	WGTACW	1 cut(s)	674
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	237, 782
Tru1I	TTAA	2 cut(s)	423, 759
Tru9I	TTAA	2 cut(s)	423, 759
TscAI	CASTG	3 cut(s)	169, 312, 733
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	5 cut(s)	55, 481, 701, 768, 795
TspGWI	ACGGA	2 cut(s)	564, 785
TspRI	CASTG	3 cut(s)	169, 312, 733
Van91I	CCANNNNNTGG	1 cut(s)	537
Vha464I	CTTAAG	1 cut(s)	758
XapI	RAATTY	4 cut(s)	488, 643, 715, 739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	323
ZrmI	AGTACT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.