AT2G40475

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017062
Physical Location & Seq
Reverse (-)
16906899 .. 16908152
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40475.1

Sequence Viewer

Length: 582 bp
ATGAAGACAATGTCAGAAGACGACTCTAATGGAGTCATATCTTCAAAGATAATCGTCAAGGAGAGCTCTCAGGTCAATTCATCGTCAAGAATCTATTACTACGGCGGAGCCTCCGTGCCTTTTTTATGGGAGACACGACCAGGGACACCAAAACATGCTCTTTTCTCTGAATCATTACGTCTTCCTCCATTAACGCCACCCCCTTCGTATTACTCATCATCTTCCTCCTCCGGGAACAAACTGAGTAAAGCGAGAACGATTAAACAAACTCGATTCGTGAAGACTCTGTTGTCACGTCACGTGTCGCGTCCTTCGTTTTCTTGGTCGTCTGCGTCTTCTTCTTCTTCCTCTTCGTACTCTTCCTCGTCTCCTCCATCTAAAGTAGAGCATCGTCCGAGAAAATGTTATTCTTGTTCGAGATCGTACGTTAAGGAAGACGACGAGGAAGAGATTGTGTCGTCGTCTCCAACGTCGACGTTGTGTTATAAAAGAGGGTTTAGTTCATCTATGGGGAGTATGAAGAGAGCTTTGTGTTCTGTTCTTAGCCATGGATCTAGTCGTAAAGATCTTAGATTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

193

Amino Acids

21.27

Weight (kDa)

9.84

Isoelectric Point (pI)

79.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40475
fragaria_vesca FvH4_7g25590
prunus_persica Prupe.2G261100_v2.0.a1
pyrus_communis pycom07g20880
rosa_chinensis RchiOBHm_Chr1g0371651
rosa_laevigata RLG00000026948
rosa_multiflora Rmu_sc0001755.1_g000061
rosa_roxburghii Rroxscaffold_4G00285500
rosa_rugosa Rorug01G0365700
rosa_samantha Rh1AG375700 Rh1CG352300 Rh1DG370200
rosa_wichuraiana Rw1G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AasI GACNNNNNNGTC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 473
AccII CGCG 1 cut(s) 307
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 559
AcvI CACGTG 1 cut(s) 301
AfaI GTAC 2 cut(s) 356, 425
AfiI CCNNNNNNNGG 1 cut(s) 231
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 1 cut(s) 45
AjiI CACGTC 1 cut(s) 296
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 66, 527
AluI AGCT 2 cut(s) 66, 527
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 3 cut(s) 125, 372, 468
AlwI GGATC 1 cut(s) 559
AsuC2I CCSGG 1 cut(s) 232
BanII GRGCYC 1 cut(s) 68
BbrPI CACGTG 1 cut(s) 301
BbsI GAAGAC 6 cut(s) 11, 24, 173, 287, 327, 441
Bbv12I GWGCWC 1 cut(s) 68
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 3 cut(s) 125, 372, 468
BfaI CTAG 1 cut(s) 555
BglII AGATCT 1 cut(s) 565
Bme1390I CCNGG 2 cut(s) 141, 232
BmgBI CACGTC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 2 cut(s) 141, 232
BmsI GCATC 1 cut(s) 397
BpiI GAAGAC 6 cut(s) 11, 24, 173, 287, 327, 441
BpuMI CCSGG 1 cut(s) 232
BsaAI YACGTR 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 140, 547
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 140, 547
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 83, 233
BseRI GAGGAG 2 cut(s) 217, 360
Bsh1236I CGCG 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 231
BsiWI CGTACG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 3 cut(s) 125, 372, 468
BsmBI CGTCTC 2 cut(s) 372, 468
BsmFI GGGAC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 419, 551, 565
Bsp19I CCATGG 1 cut(s) 547
BspACI CCGC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 82, 234
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 140, 547
BssMI GATC 3 cut(s) 419, 551, 565
BssT1I CCWWGG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 141
Bst6I CTCTTC 4 cut(s) 355, 364, 441, 515
BstBAI YACGTR 1 cut(s) 301
BstDEI CTNAG 4 cut(s) 69, 242, 542, 569
BstDSI CCRYGG 1 cut(s) 547
BstFNI CGCG 1 cut(s) 307
BstKTI GATC 3 cut(s) 422, 554, 568
BstMAI GTCTC 3 cut(s) 125, 372, 468
BstMBI GATC 3 cut(s) 419, 551, 565
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 139, 230
BstUI CGCG 1 cut(s) 307
BstV2I GAAGAC 6 cut(s) 11, 24, 173, 287, 327, 441
BstX2I RGATCY 2 cut(s) 551, 565
BstYI RGATCY 2 cut(s) 551, 565
BtgI CCRYGG 1 cut(s) 547
BtrI CACGTC 1 cut(s) 296
CseI GACGC 2 cut(s) 296, 321
Csp6I GTAC 2 cut(s) 355, 424
CviAII CATG 2 cut(s) 155, 548
CviJI RGCY 4 cut(s) 66, 110, 527, 546
CviKI_1 RGCY 4 cut(s) 66, 110, 527, 546
CviQI GTAC 2 cut(s) 355, 424
DdeI CTNAG 4 cut(s) 69, 242, 542, 569
DpnI GATC 3 cut(s) 421, 553, 567
DpnII GATC 3 cut(s) 419, 551, 565
DrdI GACNNNNNNGTC 1 cut(s) 289
DseDI GACNNNNNNGTC 1 cut(s) 289
Eam1104I CTCTTC 4 cut(s) 355, 364, 441, 515
EarI CTCTTC 4 cut(s) 355, 364, 441, 515
EciI GGCGGA 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 66
Eco72I CACGTG 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 547
Esp3I CGTCTC 2 cut(s) 372, 468
FaeI CATG 2 cut(s) 158, 551
FaiI YATR 7 cut(s) 38, 127, 156, 486, 509, 518, 549
FaqI GGGAC 1 cut(s) 157
FatI CATG 2 cut(s) 154, 547
FblI GTMKAC 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 68
FspBI CTAG 1 cut(s) 555
HapII CCGG 1 cut(s) 231
HgaI GACGC 2 cut(s) 296, 321
Hin1II CATG 2 cut(s) 158, 551
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 6 cut(s) 23, 33, 90, 170, 273, 283
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 3 cut(s) 16, 169, 396
Hpy188III TCNNGA 3 cut(s) 87, 277, 417
Hpy8I GTNNAC 1 cut(s) 474
Hpy99I CGWCG 4 cut(s) 443, 463, 475, 478
HpyAV CCTTC 2 cut(s) 213, 321
HpyCH4IV ACGT 6 cut(s) 178, 295, 300, 426, 470, 476
HpyF3I CTNAG 4 cut(s) 69, 242, 542, 569
HpySE526I ACGT 6 cut(s) 178, 295, 300, 426, 470, 476
Hsp92II CATG 2 cut(s) 158, 551
Kzo9I GATC 3 cut(s) 419, 551, 565
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 4 cut(s) 56, 126, 153, 244
LweI GCATC 1 cut(s) 397
MaeI CTAG 1 cut(s) 555
MaeII ACGT 6 cut(s) 178, 295, 300, 426, 470, 476
MaeIII GTNAC 2 cut(s) 291, 296
MalI GATC 3 cut(s) 421, 553, 567
MboI GATC 3 cut(s) 419, 551, 565
MflI RGATCY 2 cut(s) 551, 565
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 1 cut(s) 76
MlyI GAGTC 3 cut(s) 17, 42, 277
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 9 cut(s) 121, 195, 235, 238, 358, 373, 381, 436, 485
MseI TTAA 3 cut(s) 191, 261, 429
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 141, 232
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 307
NciI CCSGG 1 cut(s) 232
NcoI CCATGG 1 cut(s) 547
NdeII GATC 3 cut(s) 419, 551, 565
NlaIII CATG 2 cut(s) 158, 551
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 291, 296
NspI RCATGY 1 cut(s) 158
PcsI WCGNNNNNNNCGW 2 cut(s) 311, 467
PfeI GAWTC 3 cut(s) 90, 170, 273
Pfl23II CGTACG 1 cut(s) 423
PflFI GACNNNGTC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 230
PleI GAGTC 3 cut(s) 17, 41, 277
PmaCI CACGTG 1 cut(s) 301
PmlI CACGTG 1 cut(s) 301
PpsI GAGTC 3 cut(s) 17, 41, 277
Ppu21I YACGTR 1 cut(s) 301
PsiI TTATAA 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 139
PspCI CACGTG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 139
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 109
PsuI RGATCY 2 cut(s) 551, 565
PsyI GACNNNGTC 1 cut(s) 10
RsaI GTAC 2 cut(s) 356, 425
RsaNI GTAC 2 cut(s) 355, 424
SacI GAGCTC 1 cut(s) 68
SalI GTCGAC 1 cut(s) 472
SaqAI TTAA 3 cut(s) 191, 261, 429
Sau3AI GATC 3 cut(s) 419, 551, 565
SchI GAGTC 3 cut(s) 17, 42, 277
ScrFI CCNGG 2 cut(s) 141, 232
SduI GDGCHC 1 cut(s) 68
SetI ASST 9 cut(s) 68, 75, 181, 298, 303, 429, 473, 479, 529
SfaNI GCATC 1 cut(s) 397
SgrDI CGTCGACG 1 cut(s) 472
Sse9I AATT 1 cut(s) 76
SsiI CCGC 1 cut(s) 105
SspMI CTAG 1 cut(s) 555
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 139, 230
StyI CCWWGG 1 cut(s) 547
TaiI ACGT 6 cut(s) 181, 298, 303, 429, 473, 479
TaqI TCGA 3 cut(s) 271, 416, 473
TasI AATT 1 cut(s) 76
TfiI GAWTC 3 cut(s) 90, 170, 273
Tru1I TTAA 3 cut(s) 191, 261, 429
Tru9I TTAA 3 cut(s) 191, 261, 429
TseFI GTSAC 2 cut(s) 291, 296
Tsp45I GTSAC 2 cut(s) 291, 296
TspDTI ATGAA 4 cut(s) 17, 69, 492, 533
TspGWI ACGGA 1 cut(s) 103
Tth111I GACNNNGTC 1 cut(s) 10
XceI RCATGY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 473
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.