Rh1CG352300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017062
Physical Location & Seq
Reverse (-)
62824029 .. 62825626
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG352300.1

Sequence Viewer

Length: 633 bp
ATGATGAAGCACAACGATGATCACAGAAACAACAAGGTCTTCACCTCCCCCAAGCTCGTGGCCAAGGAGACCTCCGTGGCCAACTCGTCTTGCAGAGTCTACTACGGCGCCTCCGCCGGCGCGGTTCCGTTCATGTGGGAGTCGCAGCCAGGTACTCCTAAGCACACTCTTTCCGAGACCTCTCTTCCTCCTCTAACTCCTCCTCCTTCATATTCCTTCAACACAACTCCGAAACACTCGTCCTCATCCATGCAAAGAAGCGGCTCTAGAGCTAAAGCGCTTCTGGACTCCATTTTCCCTAGGGTGCTGAAATGGAGGAAGGCCGCCAGGAACATGTCGCCGTCTTCTTCTGTGTCGTGGTCGTCGTCCTCATCCTCATCGTGCTCGTCGACTTCTTCAAAGGGCACCCAGAAACGTTACTCGGTTTCGAGGGTGCCATTTGGCTACGACGACGAGGATGAGGATGAGGATCTAACGAGGTCCGGATCGCCTACTTCGACTTTGTGCTTTGGGATTAAACGCAGAGGTAGTGATTACTTCAGAGGCTGCAATTCGGTGCGGAAGATCAAGTTTGCCTCCATGTCCATTGCTAGCCATGACCAATCACGCCGAGGTCGTACTGCTGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.1

Weight (kDa)

9.94

Isoelectric Point (pI)

66.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40475
fragaria_vesca FvH4_7g25590
prunus_persica Prupe.2G261100_v2.0.a1
pyrus_communis pycom07g20880
rosa_chinensis RchiOBHm_Chr1g0371651
rosa_laevigata RLG00000026948
rosa_multiflora Rmu_sc0001755.1_g000061
rosa_roxburghii Rroxscaffold_4G00285500
rosa_rugosa Rorug01G0365700
rosa_samantha Rh1AG375700 Rh1CG352300 Rh1DG370200
rosa_wichuraiana Rw1G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 107, 404, 433
AccI GTMKAC 2 cut(s) 99, 389
AccII CGCG 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 482
AciI CCGC 5 cut(s) 114, 122, 261, 324, 559
AclI AACGTT 1 cut(s) 415
AclWI GGATC 2 cut(s) 477, 493
AcoI YGGCCR 2 cut(s) 60, 78
AcuI CTGAAG 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 154, 619
AfeI AGCGCT 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 2 cut(s) 220, 399
AjnI CCWGG 2 cut(s) 148, 326
AluBI AGCT 2 cut(s) 55, 272
AluI AGCT 2 cut(s) 55, 272
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 2 cut(s) 62, 170
AlwI GGATC 2 cut(s) 477, 493
AlwNI CAGNNNCTG 1 cut(s) 546
Aor13HI TCCGGA 1 cut(s) 482
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 3 cut(s) 60, 78, 321
ApeKI GCWGC 2 cut(s) 145, 546
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 3 cut(s) 110, 122, 280
AspS9I GGNCC 1 cut(s) 480
AsuHPI GGTGA 1 cut(s) 34
AsuNHI GCTAGC 1 cut(s) 590
AvaII GGWCC 1 cut(s) 480
AvrII CCTAGG 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 407
BalI TGGCCA 2 cut(s) 62, 80
BanI GGYRCC 3 cut(s) 107, 404, 433
BauI CACGAG 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 31, 336
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 157, 533
BceAI ACGGC 2 cut(s) 121, 325
BciT130I CCWGG 2 cut(s) 150, 328
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 62, 170
BfaI CTAG 3 cut(s) 267, 300, 591
BfoI RGCGCY 2 cut(s) 111, 281
BisI GCNGC 4 cut(s) 146, 262, 324, 547
BlnI CCTAGG 1 cut(s) 299
BlsI GCNGC 4 cut(s) 147, 263, 325, 548
Bme1390I CCNGG 2 cut(s) 150, 328
Bme18I GGWCC 1 cut(s) 480
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 4 cut(s) 109, 126, 406, 435
BmrFI CCNGG 2 cut(s) 150, 328
BmtI GCTAGC 1 cut(s) 594
BpiI GAAGAC 2 cut(s) 31, 336
Bpu10I CCTNAGC 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 2 cut(s) 62, 170
BsaJI CCNNGG 4 cut(s) 63, 75, 299, 610
BsaWI WCCGGW 1 cut(s) 482
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 187, 217
Bse118I RCCGGY 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 585
Bse8I GATNNNNATC 1 cut(s) 468
BseAI TCCGGA 1 cut(s) 482
BseBI CCWGG 2 cut(s) 150, 328
BseDI CCNNGG 4 cut(s) 63, 75, 299, 610
BseGI GGATG 4 cut(s) 245, 371, 463, 469
BseJI GATNNNNATC 1 cut(s) 468
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 1 cut(s) 615
BseRI GAGGAG 3 cut(s) 180, 189, 192
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 2 cut(s) 157, 533
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 3 cut(s) 62, 80, 323
BshNI GGYRCC 3 cut(s) 107, 404, 433
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 2 cut(s) 117, 483
BsmAI GTCTC 2 cut(s) 62, 170
BsnI GGCC 3 cut(s) 62, 80, 323
Bso31I GGTCTC 2 cut(s) 62, 170
Bsp1286I GDGCHC 2 cut(s) 386, 407
Bsp13I TCCGGA 1 cut(s) 482
Bsp143I GATC 4 cut(s) 19, 469, 485, 564
BspACI CCGC 5 cut(s) 114, 122, 261, 324, 559
BspANI GGCC 3 cut(s) 62, 80, 323
BspCNI CTCAG 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 482
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 4 cut(s) 109, 126, 406, 435
BspOI GCTAGC 1 cut(s) 594
BspPI GGATC 2 cut(s) 477, 493
BspT107I GGYRCC 3 cut(s) 107, 404, 433
BspTNI GGTCTC 2 cut(s) 62, 170
BsrDI GCAATG 1 cut(s) 585
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 4 cut(s) 63, 75, 299, 610
BssMI GATC 4 cut(s) 19, 469, 485, 564
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 56
BssT1I CCWWGG 2 cut(s) 63, 299
Bst2BI CACGAG 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 150, 328
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 118, 592
BstDEI CTNAG 2 cut(s) 159, 624
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 4 cut(s) 245, 371, 463, 469
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 2 cut(s) 111, 281
BstHHI GCGC 3 cut(s) 110, 122, 280
BstKTI GATC 4 cut(s) 22, 472, 488, 567
BstMAI GTCTC 2 cut(s) 62, 170
BstMBI GATC 4 cut(s) 19, 469, 485, 564
BstNI CCWGG 2 cut(s) 150, 328
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 148, 326
BstSLI GKGCMC 1 cut(s) 407
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 157, 533
BstV2I GAAGAC 2 cut(s) 31, 336
BstX2I RGATCY 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 3 cut(s) 62, 80, 323
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 4 cut(s) 245, 371, 463, 469
Cac8I GCNNGC 2 cut(s) 118, 592
CaiI CAGNNNCTG 1 cut(s) 546
CfoI GCGC 3 cut(s) 110, 122, 280
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 480
Csp6I GTAC 2 cut(s) 153, 618
CviAII CATG 5 cut(s) 133, 250, 334, 580, 596
CviQI GTAC 2 cut(s) 153, 618
DdeI CTNAG 2 cut(s) 159, 624
DinI GGCGCC 1 cut(s) 109
DpnI GATC 4 cut(s) 21, 471, 487, 566
DpnII GATC 4 cut(s) 19, 469, 485, 564
EaeI YGGCCR 2 cut(s) 60, 78
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 63, 299
Eco31I GGTCTC 2 cut(s) 62, 170
Eco47I GGWCC 1 cut(s) 480
Eco47III AGCGCT 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 148, 326
EcoT14I CCWWGG 2 cut(s) 63, 299
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 63, 299
FaeI CATG 5 cut(s) 136, 253, 337, 583, 599
FaiI YATR 6 cut(s) 134, 211, 251, 335, 581, 597
FatI CATG 5 cut(s) 132, 249, 333, 579, 595
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 2 cut(s) 99, 389
Fnu4HI GCNGC 4 cut(s) 146, 262, 324, 547
FokI GGATG 4 cut(s) 232, 358, 470, 476
Fsp4HI GCNGC 4 cut(s) 146, 262, 324, 547
FspBI CTAG 3 cut(s) 267, 300, 591
GlaI GCGC 3 cut(s) 109, 121, 279
GluI GCNGC 4 cut(s) 146, 262, 324, 547
HaeII RGCGCY 2 cut(s) 111, 281
HaeIII GGCC 3 cut(s) 62, 80, 323
HapII CCGG 2 cut(s) 117, 483
HhaI GCGC 3 cut(s) 110, 122, 280
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 5 cut(s) 136, 253, 337, 583, 599
Hin6I GCGC 3 cut(s) 108, 120, 278
HinP1I GCGC 3 cut(s) 108, 120, 278
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 3 cut(s) 96, 140, 287
HpaII CCGG 2 cut(s) 117, 483
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 100, 390
Hpy188I TCNGA 3 cut(s) 175, 231, 542
Hpy188III TCNNGA 3 cut(s) 267, 284, 483
Hpy8I GTNNAC 2 cut(s) 100, 390
Hpy99I CGWCG 4 cut(s) 367, 391, 452, 455
HpyAV CCTTC 3 cut(s) 216, 226, 313
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 93, 253, 549
HpyF3I CTNAG 2 cut(s) 159, 624
HpySE526I ACGT 1 cut(s) 415
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 5 cut(s) 136, 253, 337, 583, 599
HspAI GCGC 3 cut(s) 108, 120, 278
KasI GGCGCC 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 482
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 4 cut(s) 19, 469, 485, 564
LpnPI CCDG 8 cut(s) 130, 135, 162, 269, 313, 340, 422, 496
Lsp1109I GCAGC 2 cut(s) 157, 533
MaeI CTAG 3 cut(s) 267, 300, 591
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 1 cut(s) 416
MalI GATC 4 cut(s) 21, 471, 487, 566
MboI GATC 4 cut(s) 19, 469, 485, 564
MboII GAAGA 6 cut(s) 31, 176, 336, 339, 387, 574
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 386, 407
MlsI TGGCCA 2 cut(s) 62, 80
MluCI AATT 2 cut(s) 550, 628
MluNI TGGCCA 2 cut(s) 62, 80
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 3 cut(s) 105, 149, 281
Mox20I TGGCCA 2 cut(s) 62, 80
MreI CGCCGGCG 1 cut(s) 116
MroI TCCGGA 1 cut(s) 482
MroNI GCCGGC 1 cut(s) 116
MscI TGGCCA 2 cut(s) 62, 80
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 2 cut(s) 62, 80
MspI CCGG 2 cut(s) 117, 483
MspR9I CCNGG 2 cut(s) 150, 328
MvaI CCWGG 2 cut(s) 150, 328
MvnI CGCG 1 cut(s) 122
NaeI GCCGGC 1 cut(s) 118
NarI GGCGCC 1 cut(s) 108
NdeII GATC 4 cut(s) 19, 469, 485, 564
NgoMIV GCCGGC 1 cut(s) 116
NheI GCTAGC 1 cut(s) 590
NlaIII CATG 5 cut(s) 136, 253, 337, 583, 599
NlaIV GGNNCC 4 cut(s) 109, 126, 406, 435
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 4 cut(s) 362, 386, 494, 613
PdiI GCCGGC 1 cut(s) 118
PkrI GCNGC 4 cut(s) 147, 263, 325, 548
PleI GAGTC 3 cut(s) 104, 148, 281
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 3 cut(s) 104, 148, 281
PscI ACATGT 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 415
Psp6I CCWGG 2 cut(s) 148, 326
PspGI CCWGG 2 cut(s) 148, 326
PspN4I GGNNCC 4 cut(s) 109, 126, 406, 435
PspPI GGNCC 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 546
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 2 cut(s) 154, 619
RsaNI GTAC 2 cut(s) 153, 618
RseI CAYNNNNRTG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 4 cut(s) 146, 262, 324, 547
Sau3AI GATC 4 cut(s) 19, 469, 485, 564
Sau96I GGNCC 1 cut(s) 480
SchI GAGTC 3 cut(s) 105, 149, 281
ScrFI CCNGG 2 cut(s) 150, 328
SduI GDGCHC 2 cut(s) 386, 407
SfoI GGCGCC 1 cut(s) 109
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 2 cut(s) 550, 628
SsiI CCGC 5 cut(s) 114, 122, 261, 324, 559
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 3 cut(s) 267, 300, 591
StyD4I CCNGG 2 cut(s) 148, 326
StyI CCWWGG 2 cut(s) 63, 299
TaiI ACGT 1 cut(s) 418
TaqI TCGA 3 cut(s) 389, 428, 497
TasI AATT 2 cut(s) 550, 628
TauI GCSGC 2 cut(s) 264, 326
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TseI GCWGC 2 cut(s) 145, 546
TspDTI ATGAA 3 cut(s) 20, 121, 198
TspGWI ACGGA 2 cut(s) 64, 117
VpaK11BI GGWCC 1 cut(s) 480
XbaI TCTAGA 1 cut(s) 266
XceI RCATGY 1 cut(s) 337
XmaJI CCTAGG 1 cut(s) 299
XmiI GTMKAC 2 cut(s) 99, 389
XspI CTAG 3 cut(s) 267, 300, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.