pycom07g20880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017062
Physical Location & Seq
Reverse (-)
22823403 .. 22824073
671 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g20880.1

Sequence Viewer

Length: 624 bp
ATGGTGACTGAAAACGAGTGCCTTTCCTCTAAGATTGTCTCCAAGGAAGCATCCGTGGCCAACTCTTCTTGCAGGGTTTACTATGGAGAAGCTGGTGTTATCCCATTCAAGTGGGAGTCACAGCCGGGTACACCCAAGCACAAGTTTTCAGAGTCTTCTCTTCCTCCTCTCACACCTCCTCCGTCCTATTCCACTACCCGTCCAAGCAGCTTTAAACACACCCAGCAAAACCCTAGCTCCAAAACAAAGTTTTTAGGCAGCATTCTTTCCAGGCTTAGGTCATTGAAGAAAATGCTCAAGGCACCCAACATGGCATCGCCATTGCCATCGCTATCACCATCATCATCGTTGTCATTGGCATCATCACCGTTGTCAGCATCCTACTCATCATCGTCATCGTCATCGAATTCTTCATCAGGTTTGAGAAACAAAAAGGGTCGAAAAAATCAATGTTTTTCGGTTTCGAGGATGCCATTAGAGAATAATTATGGGGGAGATTATTATGATCGATCATCATCATCAAAATTCTGGATCACCTACTTCAACTTTATGCTTTGGAGGCTGCTAGCCTGCTTTTCAGTGAGGAAAATGAAATTTGCGTGTTTGTCCATTGTAAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.83

Weight (kDa)

10.02

Isoelectric Point (pI)

74.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40475
fragaria_vesca FvH4_7g25590
prunus_persica Prupe.2G261100_v2.0.a1
pyrus_communis pycom07g20880
rosa_chinensis RchiOBHm_Chr1g0371651
rosa_laevigata RLG00000026948
rosa_multiflora Rmu_sc0001755.1_g000061
rosa_roxburghii Rroxscaffold_4G00285500
rosa_rugosa Rorug01G0365700
rosa_samantha Rh1AG375700 Rh1CG352300 Rh1DG370200
rosa_wichuraiana Rw1G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AclWI GGATC 1 cut(s) 539
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 3 cut(s) 406, 524, 593
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 3 cut(s) 109, 286, 544
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 3 cut(s) 92, 210, 237
AluI AGCT 3 cut(s) 92, 210, 237
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 1 cut(s) 539
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 207, 258, 562
ApoI RAATTY 3 cut(s) 406, 524, 593
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 4 cut(s) 16, 327, 357, 526
AsuNHI GCTAGC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 219, 270, 549
BccI CCATC 2 cut(s) 334, 346
BciT130I CCWGG 1 cut(s) 271
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 2 cut(s) 234, 566
BisI GCNGC 3 cut(s) 208, 259, 563
BlsI GCNGC 3 cut(s) 209, 260, 564
Bme1390I CCNGG 2 cut(s) 126, 271
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 126, 271
BmsI GCATC 5 cut(s) 59, 323, 368, 386, 459
BmtI GCTAGC 1 cut(s) 569
BpiI GAAGAC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 126
Bsa29I ATCGAT 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 514
BsaJI CCNNGG 2 cut(s) 42, 54
BsaXI ACNNNNNCTCC 4 cut(s) 163, 193, 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 514
BseBI CCWGG 1 cut(s) 271
BseCI ATCGAT 1 cut(s) 508
BseDI CCNNGG 2 cut(s) 42, 54
BseGI GGATG 3 cut(s) 50, 377, 474
BseJI GATNNNNATC 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 320
BseRI GAGGAG 2 cut(s) 156, 168
BseXI GCAGC 3 cut(s) 219, 270, 549
BseYI CCCAGC 1 cut(s) 222
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 301
BshVI ATCGAT 1 cut(s) 508
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 505, 509, 531
BspANI GGCC 1 cut(s) 59
BspDI ATCGAT 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 303
BspOI GCTAGC 1 cut(s) 569
BspPI GGATC 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 42, 54
BssMI GATC 3 cut(s) 505, 509, 531
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 2 cut(s) 70, 165
BstC8I GCNNGC 2 cut(s) 567, 571
BstDEI CTNAG 2 cut(s) 30, 275
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 50, 377, 474
BstKTI GATC 3 cut(s) 508, 512, 534
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 3 cut(s) 505, 509, 531
BstMWI GCNNNNNNNGC 2 cut(s) 56, 559
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 2 cut(s) 124, 269
BstV1I GCAGC 3 cut(s) 219, 270, 549
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 508
BsuRI GGCC 1 cut(s) 59
BsuTUI ATCGAT 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 2 cut(s) 300, 312
BtsCI GGATG 3 cut(s) 50, 377, 474
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 2 cut(s) 567, 571
ClaI ATCGAT 1 cut(s) 508
Csp6I GTAC 1 cut(s) 129
CviAII CATG 2 cut(s) 310, 621
CviJI RGCY 8 cut(s) 59, 92, 124, 210, 237, 274, 562, 569
CviKI_1 RGCY 8 cut(s) 59, 92, 124, 210, 237, 274, 562, 569
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 2 cut(s) 30, 275
DpnI GATC 3 cut(s) 507, 511, 533
DpnII GATC 3 cut(s) 505, 509, 531
DraI TTTAAA 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 70, 165
EarI CTCTTC 2 cut(s) 70, 165
Eco130I CCWWGG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 313, 624
FaiI YATR 6 cut(s) 84, 311, 489, 504, 551, 622
FatI CATG 2 cut(s) 309, 620
Fnu4HI GCNGC 3 cut(s) 208, 259, 563
FokI GGATG 3 cut(s) 37, 364, 481
Fsp4HI GCNGC 3 cut(s) 208, 259, 563
FspBI CTAG 2 cut(s) 234, 566
GluI GCNGC 3 cut(s) 208, 259, 563
GsaI CCCAGC 1 cut(s) 226
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 125
Hin1II CATG 2 cut(s) 313, 624
HinfI GANTC 2 cut(s) 116, 152
HpaII CCGG 1 cut(s) 125
HphI GGTGA 4 cut(s) 16, 327, 357, 526
Hpy166II GTNNAC 2 cut(s) 79, 131
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 529
Hpy8I GTNNAC 2 cut(s) 79, 131
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 559
HpyF3I CTNAG 2 cut(s) 30, 275
Hsp92II CATG 2 cut(s) 313, 624
Kzo9I GATC 3 cut(s) 505, 509, 531
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 9 cut(s) 58, 78, 138, 236, 256, 283, 402, 514, 583
Lsp1109I GCAGC 3 cut(s) 219, 270, 549
LweI GCATC 5 cut(s) 59, 323, 368, 386, 459
MaeI CTAG 2 cut(s) 234, 566
MaeIII GTNAC 2 cut(s) 4, 117
MalI GATC 3 cut(s) 507, 511, 533
MboI GATC 3 cut(s) 505, 509, 531
MboII GAAGA 5 cut(s) 57, 147, 152, 298, 402
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 4 cut(s) 406, 484, 524, 593
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 2 cut(s) 125, 161
MnlI CCTC 8 cut(s) 37, 174, 177, 186, 189, 459, 552, 576
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 109
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 126, 271
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 56, 559
NciI CCSGG 1 cut(s) 126
NdeII GATC 3 cut(s) 505, 509, 531
NheI GCTAGC 1 cut(s) 565
NlaIII CATG 2 cut(s) 313, 624
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 4, 117
PctI GAATGC 1 cut(s) 261
PkrI GCNGC 3 cut(s) 209, 260, 564
PleI GAGTC 2 cut(s) 124, 160
PpsI GAGTC 2 cut(s) 124, 160
Psp6I CCWGG 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 303
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 3 cut(s) 208, 259, 563
Sau3AI GATC 3 cut(s) 505, 509, 531
SchI GAGTC 2 cut(s) 125, 161
ScrFI CCNGG 2 cut(s) 126, 271
SetI ASST 7 cut(s) 94, 178, 212, 239, 281, 421, 539
SfaNI GCATC 5 cut(s) 59, 323, 368, 386, 459
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 4 cut(s) 406, 484, 524, 593
SspMI CTAG 2 cut(s) 234, 566
StyD4I CCNGG 2 cut(s) 124, 269
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 369
TaqI TCGA 4 cut(s) 404, 439, 464, 508
TasI AATT 4 cut(s) 406, 484, 524, 593
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 2 cut(s) 4, 117
TseI GCWGC 3 cut(s) 207, 258, 562
Tsp45I GTSAC 2 cut(s) 4, 117
TspDTI ATGAA 2 cut(s) 402, 605
TspGWI ACGGA 2 cut(s) 43, 171
TspRI CASTG 1 cut(s) 585
XapI RAATTY 3 cut(s) 406, 524, 593
XspI CTAG 2 cut(s) 234, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.