Rorug01G0365700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017062
Physical Location & Seq
Forward (+)
48092927 .. 48093259
333 bp
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UTR
Exon/CDS
Intron
Rorug01G0365700.1

Sequence Viewer

Length: 333 bp
ATGATTGTGGTCAACCACAAAGGCCAAGAGAAAAAGTATGCTGCTGAAGAAATTTCATCCATGATTTTGGCAAAGATGCGTGAGATTGCTGAAGCCTATATTGGTGCTACTGTAAAGAATTCAATAATTACTGTCCCTGCATACTTCAACTACTCCCAGCGACAAGCTACCAAAAGGGCTGCTGCCACTGATGGCTTCAATGTTATTCGCATTATCAACGAGCCTACTGCTGTTGTAAATGATAATGACTATTCATGCAATAGGTATTGCTTAATGTATGCGATTGACAGACTCGTAATGTGTGCAATTGACATACTTGTAATGTGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.38

Weight (kDa)

6.56

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 3 - 78 2.3e-28 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40475
fragaria_vesca FvH4_7g25590
prunus_persica Prupe.2G261100_v2.0.a1
pyrus_communis pycom07g20880
rosa_chinensis RchiOBHm_Chr1g0371651
rosa_laevigata RLG00000026948
rosa_multiflora Rmu_sc0001755.1_g000061
rosa_roxburghii Rroxscaffold_4G00285500
rosa_rugosa Rorug01G0365700
rosa_samantha Rh1AG375700 Rh1CG352300 Rh1DG370200
rosa_wichuraiana Rw1G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 51, 118
AcuI CTGAAG 2 cut(s) 66, 111
AgsI TTSAA 3 cut(s) 123, 148, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 3 cut(s) 41, 179, 182
ApoI RAATTY 2 cut(s) 51, 118
BbvI GCAGC 3 cut(s) 28, 166, 169
BccI CCATC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BisI GCNGC 3 cut(s) 42, 180, 183
BlsI GCNGC 3 cut(s) 43, 181, 184
BmsI GCATC 1 cut(s) 66
BseGI GGATG 1 cut(s) 56
BseXI GCAGC 3 cut(s) 28, 166, 169
BseYI CCCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 24
BslFI GGGAC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 24
BspANI GGCC 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 112, 133
BstF5I GGATG 1 cut(s) 56
BstV1I GCAGC 3 cut(s) 28, 166, 169
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 186
CviAII CATG 2 cut(s) 61, 255
CviJI RGCY 6 cut(s) 24, 95, 167, 179, 195, 223
CviKI_1 RGCY 6 cut(s) 24, 95, 167, 179, 195, 223
Eco57I CTGAAG 2 cut(s) 66, 111
EcoRI GAATTC 1 cut(s) 118
FaeI CATG 2 cut(s) 64, 258
FaiI YATR 7 cut(s) 39, 62, 99, 142, 256, 279, 314
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 60, 254
Fnu4HI GCNGC 3 cut(s) 42, 180, 183
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 42, 180, 183
GluI GCNGC 3 cut(s) 42, 180, 183
GsaI CCCAGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 24
Hin1II CATG 2 cut(s) 64, 258
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 1 cut(s) 291
Hpy166II GTNNAC 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4III ACNGT 2 cut(s) 112, 133
HpyCH4V TGCA 3 cut(s) 140, 258, 305
Hsp92II CATG 2 cut(s) 64, 258
LpnPI CCDG 2 cut(s) 150, 170
Lsp1109I GCAGC 3 cut(s) 28, 166, 169
LweI GCATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 59
MfeI CAATTG 1 cut(s) 306
MluCI AATT 4 cut(s) 51, 118, 126, 306
MlyI GAGTC 1 cut(s) 285
MseI TTAA 1 cut(s) 272
MunI CAATTG 1 cut(s) 306
NlaIII CATG 2 cut(s) 64, 258
PkrI GCNGC 3 cut(s) 43, 181, 184
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 3 cut(s) 42, 180, 183
SchI GAGTC 1 cut(s) 285
SetI ASST 2 cut(s) 169, 266
SfaNI GCATC 1 cut(s) 66
Sse9I AATT 4 cut(s) 51, 118, 126, 306
TaaI ACNGT 2 cut(s) 112, 133
TasI AATT 4 cut(s) 51, 118, 126, 306
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 1 cut(s) 193
TseI GCWGC 3 cut(s) 41, 179, 182
TspDTI ATGAA 2 cut(s) 45, 243
TspRI CASTG 1 cut(s) 193
XapI RAATTY 2 cut(s) 51, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.