Prupe.2G261100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017062
Physical Location & Seq
Reverse (-)
27043561 .. 27044763
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G261100.1

Sequence Viewer

Length: 645 bp
ATGGTGGTTGACAACAAGTACTTGTCCTCGAAGCTTGTCTCCAAGGAAGAAGCCTCCATGGCCAACGCTTCTTGCAGAGTCTACTACGGAGAAGCAGCAGGTGCAATTCCATTCATGTGGGAGTCTCAGCCAGGTACACCCAAGCACCCTTCTTCACAGTCTTCTCTTCCTCCTCTCACACCCCCACCTTCCTATTCCACCACCCAACCAAACTCTAAACGCACCCACAAAATCACCTCAAAATCAAAGTTTCTGGACACCATTTTTCCCAGGCTGAGGTCTTCGAGGAAAATGCTCAAGCCACCCAATTCCATGTCACCACCATCACTGTCCTCCGCATCCTCATCATCCTCATCATGGTCGTCATCATCATCATCATCATCAAACTACTCATCTTCCTCAGCATCAAGTTTGAGAAACAAAGGGGCCCGCAAATTTTATCACAAATATGAGGAAGATTATGATGAGCATGATCATCATGAATCAAAATCTGGATCACCTACTTCAACTTTATGTTTTGGTGGGAAATGCAGAGGTGCAAATATGAATGGGATCCGAGGCTGCTATTCAATGAAGAACATAAGATTTGGGTTCTTGTCCATTGTTAACCATGAATCTGGCCGAGTTACTAATAATAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.37

Weight (kDa)

9.72

Isoelectric Point (pI)

67.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40475
fragaria_vesca FvH4_7g25590
prunus_persica Prupe.2G261100_v2.0.a1
pyrus_communis pycom07g20880
rosa_chinensis RchiOBHm_Chr1g0371651
rosa_laevigata RLG00000026948
rosa_multiflora Rmu_sc0001755.1_g000061
rosa_roxburghii Rroxscaffold_4G00285500
rosa_rugosa Rorug01G0365700
rosa_samantha Rh1AG375700 Rh1CG352300 Rh1DG370200
rosa_wichuraiana Rw1G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 81
AciI CCGC 2 cut(s) 336, 430
AclWI GGATC 3 cut(s) 502, 547, 560
AcoI YGGCCR 2 cut(s) 60, 619
AcsI RAATTY 1 cut(s) 434
AfaI GTAC 2 cut(s) 20, 136
AfiI CCNNNNNNNGG 2 cut(s) 276, 357
AgsI TTSAA 2 cut(s) 507, 570
AjnI CCWGG 2 cut(s) 130, 269
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 2 cut(s) 43, 129
AlwI GGATC 3 cut(s) 502, 547, 560
AoxI GGCC 3 cut(s) 60, 426, 619
ApaI GGGCCC 1 cut(s) 430
ApeKI GCWGC 2 cut(s) 95, 561
ApoI RAATTY 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 426, 427
AsuHPI GGTGA 3 cut(s) 226, 309, 489
BaeGI GKGCMC 1 cut(s) 430
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 552
BanII GRGCYC 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 153, 273
BbvCI CCTCAGC 2 cut(s) 275, 400
BbvI GCAGC 2 cut(s) 107, 548
BccI CCATC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 2 cut(s) 132, 271
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 43, 129
BfuAI ACCTGC 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 2 cut(s) 96, 562
BlsI GCNGC 2 cut(s) 97, 563
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 132, 271
BmgT120I GGNCC 2 cut(s) 426, 427
BmiI GGNNCC 3 cut(s) 427, 428, 554
BmrFI CCNGG 2 cut(s) 132, 271
BmsI GCATC 2 cut(s) 347, 413
BpiI GAAGAC 2 cut(s) 153, 273
Bpu10I CCTNAGC 2 cut(s) 275, 400
BpuEI CTTGAG 1 cut(s) 281
BsaJI CCNNGG 4 cut(s) 42, 57, 269, 556
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 357
BseBI CCWGG 2 cut(s) 132, 271
BseDI CCNNGG 4 cut(s) 42, 57, 269, 556
BseGI GGATG 2 cut(s) 338, 347
BseLI CCNNNNNNNGG 2 cut(s) 276, 357
BseMII CTCAG 3 cut(s) 140, 266, 414
BseRI GAGGAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 2 cut(s) 107, 548
BshFI GGCC 3 cut(s) 62, 428, 621
BslI CCNNNNNNNGG 2 cut(s) 276, 357
BsmAI GTCTC 2 cut(s) 43, 129
BsnI GGCC 3 cut(s) 62, 428, 621
Bsp120I GGGCCC 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 3 cut(s) 472, 494, 552
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 2 cut(s) 336, 430
BspANI GGCC 3 cut(s) 62, 428, 621
BspCNI CTCAG 3 cut(s) 139, 267, 413
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 427, 428, 554
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 3 cut(s) 502, 547, 560
BssECI CCNNGG 4 cut(s) 42, 57, 269, 556
BssMI GATC 3 cut(s) 472, 494, 552
BssT1I CCWWGG 2 cut(s) 42, 57
Bst2UI CCWGG 2 cut(s) 132, 271
Bst4CI ACNGT 2 cut(s) 159, 330
Bst6I CTCTTC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 4 cut(s) 126, 275, 400, 642
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 338, 347
BstKTI GATC 3 cut(s) 475, 497, 555
BstMAI GTCTC 2 cut(s) 43, 129
BstMBI GATC 3 cut(s) 472, 494, 552
BstMWI GCNNNNNNNGC 2 cut(s) 59, 101
BstNI CCWGG 2 cut(s) 132, 271
BstSCI CCNGG 2 cut(s) 130, 269
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 107, 548
BstV2I GAAGAC 2 cut(s) 153, 273
BstX2I RGATCY 1 cut(s) 552
BstXI CCANNNNNNTGG 2 cut(s) 117, 617
BstYI RGATCY 1 cut(s) 552
BsuRI GGCC 3 cut(s) 62, 428, 621
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 338, 347
BtsIMutI CAGTG 1 cut(s) 326
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 430
CciI TCATGA 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 426, 427
Csp6I GTAC 2 cut(s) 19, 135
CviAII CATG 7 cut(s) 58, 115, 313, 357, 470, 479, 611
CviJI RGCY 9 cut(s) 34, 53, 62, 130, 274, 301, 428, 561, 621
CviKI_1 RGCY 9 cut(s) 34, 53, 62, 130, 274, 301, 428, 561, 621
CviQI GTAC 2 cut(s) 19, 135
DdeI CTNAG 4 cut(s) 126, 275, 400, 642
DpnI GATC 3 cut(s) 474, 496, 554
DpnII GATC 3 cut(s) 472, 494, 552
EaeI YGGCCR 2 cut(s) 60, 619
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 42, 57
Eco24I GRGCYC 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 426
EcoRII CCWGG 2 cut(s) 130, 269
EcoT14I CCWWGG 2 cut(s) 42, 57
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 2 cut(s) 42, 57
FaeI CATG 7 cut(s) 61, 118, 316, 360, 473, 482, 614
FatI CATG 7 cut(s) 57, 114, 312, 356, 469, 478, 610
FauI CCCGC 1 cut(s) 437
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 96, 562
FokI GGATG 2 cut(s) 325, 334
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 2 cut(s) 96, 562
GluI GCNGC 2 cut(s) 96, 562
HaeIII GGCC 3 cut(s) 62, 428, 621
Hin1II CATG 7 cut(s) 61, 118, 316, 360, 473, 482, 614
HincII GTYRAC 2 cut(s) 10, 607
HindII GTYRAC 2 cut(s) 10, 607
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 4 cut(s) 78, 122, 482, 614
HpaI GTTAAC 1 cut(s) 607
HphI GGTGA 3 cut(s) 226, 309, 489
Hpy166II GTNNAC 4 cut(s) 10, 82, 137, 607
Hpy188I TCNGA 1 cut(s) 557
Hpy188III TCNNGA 3 cut(s) 254, 479, 492
Hpy8I GTNNAC 4 cut(s) 10, 82, 137, 607
HpyAV CCTTC 2 cut(s) 159, 198
HpyCH4III ACNGT 2 cut(s) 159, 330
HpyCH4V TGCA 4 cut(s) 75, 104, 531, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 101
HpyF3I CTNAG 4 cut(s) 126, 275, 400, 642
Hsp92II CATG 7 cut(s) 61, 118, 316, 360, 473, 482, 614
Ksp22I TGATCA 1 cut(s) 472
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 3 cut(s) 472, 494, 552
LpnPI CCDG 8 cut(s) 84, 117, 144, 239, 256, 283, 477, 603
Lsp1109I GCAGC 2 cut(s) 107, 548
LweI GCATC 2 cut(s) 347, 413
MaeIII GTNAC 2 cut(s) 315, 625
MalI GATC 3 cut(s) 474, 496, 554
MboI GATC 3 cut(s) 472, 494, 552
MboII GAAGA 8 cut(s) 59, 144, 153, 158, 273, 387, 467, 586
MflI RGATCY 1 cut(s) 552
MhlI GDGCHC 1 cut(s) 430
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 3 cut(s) 105, 307, 434
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 2 cut(s) 87, 131
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 606
MslI CAYNNNNRTG 2 cut(s) 115, 447
Msp20I TGGCCA 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 132, 271
MvaI CCWGG 2 cut(s) 132, 271
MwoI GCNNNNNNNGC 2 cut(s) 59, 101
NcoI CCATGG 1 cut(s) 57
NdeII GATC 3 cut(s) 472, 494, 552
NlaIII CATG 7 cut(s) 61, 118, 316, 360, 473, 482, 614
NlaIV GGNNCC 3 cut(s) 427, 428, 554
NmuCI GTSAC 1 cut(s) 315
PagI TCATGA 1 cut(s) 478
PaqCI CACCTGC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 482, 614
PkrI GCNGC 2 cut(s) 97, 563
PleI GAGTC 2 cut(s) 86, 130
PpsI GAGTC 2 cut(s) 86, 130
Psp6I CCWGG 2 cut(s) 130, 269
PspGI CCWGG 2 cut(s) 130, 269
PspN4I GGNNCC 3 cut(s) 427, 428, 554
PspOMI GGGCCC 1 cut(s) 426
PspPI GGNCC 2 cut(s) 426, 427
PsuI RGATCY 1 cut(s) 552
RsaI GTAC 2 cut(s) 20, 136
RsaNI GTAC 2 cut(s) 19, 135
RseI CAYNNNNRTG 2 cut(s) 115, 447
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 2 cut(s) 96, 562
Sau3AI GATC 3 cut(s) 472, 494, 552
Sau96I GGNCC 2 cut(s) 426, 427
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 2 cut(s) 87, 131
ScrFI CCNGG 2 cut(s) 132, 271
SduI GDGCHC 1 cut(s) 430
SetI ASST 8 cut(s) 36, 103, 136, 190, 239, 281, 502, 538
SfaNI GCATC 2 cut(s) 347, 413
SmiMI CAYNNNNRTG 2 cut(s) 115, 447
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 3 cut(s) 105, 307, 434
SsiI CCGC 2 cut(s) 336, 430
StyD4I CCNGG 2 cut(s) 130, 269
StyI CCWWGG 2 cut(s) 42, 57
TaaI ACNGT 2 cut(s) 159, 330
TaqI TCGA 2 cut(s) 29, 284
TasI AATT 3 cut(s) 105, 307, 434
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 2 cut(s) 482, 614
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 2 cut(s) 95, 561
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 5 cut(s) 103, 495, 560, 587, 627
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 333
XapI RAATTY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 81
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.