FvH4_7g25590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017062
Physical Location & Seq
Reverse (-)
19511823 .. 19512667
845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25590.t1

Sequence Viewer

Length: 636 bp
ATGATGAAGCACAACAATGATCACAGGAACAACAACAAGGTCTTCGCCTCCCCCAAGCTCGTGGCCAAGGAGACCTCCGTGGGCAACTCGTCTTGCAGAGTCTACTACGGCGCCGCCGCCGGAGCGGTTCCGTTCATGTGGGAGTCGCAGCCAGGTACTCCTAAGCACACTCTTTCCGAGACTTCTCTTCCTCCTCTCACTCCTCCTCCTTCATATTCCGTCAACACAAATCCGAAACACTACTCGTCCTCGACCATACAAAGAAGCGGCGCTAGGGCAAAAGCTCTTCTGGACTCGATTATCCCTAGGGCTCTGAAATTCAGGAAGGCCGGCCGGAACATGTCGCCGACGTCTTCATCGGTGTCGTGGTCGTCGTCCTCGTCCTCATCGTGGTCGTCGACATCAAAGGGCACCCAGAAACCTTATAACTCGGTTTCAAGGGTGCCCTTTGGTTACGACGACGAGGATGAAGACGAGGATATAAGGAGGTCCGGATCGCCTACTTCGACATTGTGCTTTGGGATTAAACGCAGAGGTAGTGAGTTTGTGAGAAGCTGCAGCTCGGTGCGGAAGATCAAGTTTGCCTTCATGTCCATTGCTAGCCATGACCAATCCCGCCGGGATAGGACTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.18

Weight (kDa)

10.09

Isoelectric Point (pI)

67.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40475
fragaria_vesca FvH4_7g25590
prunus_persica Prupe.2G261100_v2.0.a1
pyrus_communis pycom07g20880
rosa_chinensis RchiOBHm_Chr1g0371651
rosa_laevigata RLG00000026948
rosa_multiflora Rmu_sc0001755.1_g000061
rosa_roxburghii Rroxscaffold_4G00285500
rosa_rugosa Rorug01G0365700
rosa_samantha Rh1AG375700 Rh1CG352300 Rh1DG370200
rosa_wichuraiana Rw1G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AatII GACGTC 1 cut(s) 353
AccB1I GGYRCC 3 cut(s) 110, 410, 442
AccBSI CCGCTC 1 cut(s) 125
AccI GTMKAC 2 cut(s) 102, 398
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 6 cut(s) 114, 117, 125, 267, 568, 616
AclWI GGATC 1 cut(s) 502
AcoI YGGCCR 2 cut(s) 63, 331
AcsI RAATTY 1 cut(s) 317
AcyI GRCGYC 2 cut(s) 111, 350
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 390
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 1 cut(s) 438
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 4 cut(s) 58, 284, 555, 561
AluI AGCT 4 cut(s) 58, 284, 555, 561
Alw26I GTCTC 2 cut(s) 65, 173
AlwI GGATC 1 cut(s) 502
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 3 cut(s) 63, 327, 331
ApeKI GCWGC 3 cut(s) 148, 555, 558
ApoI RAATTY 1 cut(s) 317
AspA2I CCTAGG 1 cut(s) 305
AspLEI GCGC 2 cut(s) 113, 272
AspS9I GGNCC 1 cut(s) 489
AsuC2I CCSGG 1 cut(s) 620
AsuNHI GCTAGC 1 cut(s) 599
AvaII GGWCC 1 cut(s) 489
AvrII CCTAGG 1 cut(s) 305
BaeGI GKGCMC 2 cut(s) 413, 447
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 3 cut(s) 110, 410, 442
BanII GRGCYC 1 cut(s) 313
BauI CACGAG 1 cut(s) 59
BbsI GAAGAC 3 cut(s) 34, 345, 477
BbvI GCAGC 3 cut(s) 160, 542, 570
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 2 cut(s) 65, 173
BfaI CTAG 3 cut(s) 273, 306, 600
BfmI CTRYAG 1 cut(s) 556
BfoI RGCGCY 2 cut(s) 114, 273
BisI GCNGC 6 cut(s) 114, 117, 149, 268, 556, 559
BlnI CCTAGG 1 cut(s) 305
BlsI GCNGC 6 cut(s) 115, 118, 150, 269, 557, 560
Bme1390I CCNGG 2 cut(s) 153, 620
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 4 cut(s) 112, 129, 412, 444
BmrFI CCNGG 2 cut(s) 153, 620
BmtI GCTAGC 1 cut(s) 603
BpiI GAAGAC 3 cut(s) 34, 345, 477
Bpu10I CCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 620
BsaHI GRCGYC 2 cut(s) 111, 350
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 66, 78, 305
BsaWI WCCGGW 1 cut(s) 491
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 594
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 66, 78, 305
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 594
BseRI GAGGAG 3 cut(s) 183, 192, 195
BseSI GKGCMC 2 cut(s) 413, 447
BseX3I CGGCCG 1 cut(s) 331
BseXI GCAGC 3 cut(s) 160, 542, 570
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 3 cut(s) 65, 329, 333
BshNI GGYRCC 3 cut(s) 110, 410, 442
BsiEI CGRYCG 1 cut(s) 334
BsiSI CCGG 5 cut(s) 120, 330, 334, 492, 619
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 2 cut(s) 65, 173
BsnI GGCC 3 cut(s) 65, 329, 333
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 313, 413, 447
Bsp13I TCCGGA 1 cut(s) 491
Bsp143I GATC 3 cut(s) 19, 494, 573
BspACI CCGC 6 cut(s) 114, 117, 125, 267, 568, 616
BspANI GGCC 3 cut(s) 65, 329, 333
BspEI TCCGGA 1 cut(s) 491
BspLI GGNNCC 4 cut(s) 112, 129, 412, 444
BspMAI CTGCAG 1 cut(s) 560
BspOI GCTAGC 1 cut(s) 603
BspPI GGATC 1 cut(s) 502
BspQI GCTCTTC 1 cut(s) 291
BspT107I GGYRCC 3 cut(s) 110, 410, 442
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 66, 78, 305
BssMI GATC 3 cut(s) 19, 494, 573
BssNI GRCGYC 2 cut(s) 111, 350
BssSI CACGAG 1 cut(s) 59
BssT1I CCWWGG 2 cut(s) 66, 305
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 153
Bst6I CTCTTC 2 cut(s) 192, 291
BstACI GRCGYC 2 cut(s) 111, 350
BstC8I GCNNGC 2 cut(s) 331, 601
BstDEI CTNAG 2 cut(s) 162, 633
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 472
BstH2I RGCGCY 2 cut(s) 114, 273
BstHHI GCGC 2 cut(s) 113, 272
BstKTI GATC 3 cut(s) 22, 497, 576
BstMAI GTCTC 2 cut(s) 65, 173
BstMBI GATC 3 cut(s) 19, 494, 573
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 151, 618
BstSFI CTRYAG 1 cut(s) 556
BstSLI GKGCMC 2 cut(s) 413, 447
BstV1I GCAGC 3 cut(s) 160, 542, 570
BstV2I GAAGAC 3 cut(s) 34, 345, 477
BstXI CCANNNNNNTGG 1 cut(s) 61
BstZI CGGCCG 1 cut(s) 331
BsuRI GGCC 3 cut(s) 65, 329, 333
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 331, 601
CfoI GCGC 2 cut(s) 113, 272
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 489
Csp6I GTAC 1 cut(s) 156
CviAII CATG 4 cut(s) 136, 340, 589, 605
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 2 cut(s) 162, 633
DinI GGCGCC 1 cut(s) 112
DpnI GATC 3 cut(s) 21, 496, 575
DpnII GATC 3 cut(s) 19, 494, 573
EaeI YGGCCR 2 cut(s) 63, 331
EagI CGGCCG 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 192, 291
EarI CTCTTC 2 cut(s) 192, 291
EclXI CGGCCG 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 66, 305
Eco24I GRGCYC 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 489
Eco52I CGGCCG 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 66, 305
EcoT38I GRGCYC 1 cut(s) 313
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
ErhI CCWWGG 2 cut(s) 66, 305
FaeI CATG 4 cut(s) 139, 343, 592, 608
FaiI YATR 8 cut(s) 137, 214, 257, 341, 426, 482, 590, 606
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FatI CATG 4 cut(s) 135, 339, 588, 604
FauI CCCGC 1 cut(s) 623
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 2 cut(s) 102, 398
Fnu4HI GCNGC 6 cut(s) 114, 117, 149, 268, 556, 559
FokI GGATG 1 cut(s) 479
FriOI GRGCYC 1 cut(s) 313
FseI GGCCGGCC 1 cut(s) 333
Fsp4HI GCNGC 6 cut(s) 114, 117, 149, 268, 556, 559
FspBI CTAG 3 cut(s) 273, 306, 600
GlaI GCGC 2 cut(s) 112, 271
GluI GCNGC 6 cut(s) 114, 117, 149, 268, 556, 559
HaeII RGCGCY 2 cut(s) 114, 273
HaeIII GGCC 3 cut(s) 65, 329, 333
HapII CCGG 5 cut(s) 120, 330, 334, 492, 619
HhaI GCGC 2 cut(s) 113, 272
Hin1I GRCGYC 2 cut(s) 111, 350
Hin1II CATG 4 cut(s) 139, 343, 592, 608
Hin6I GCGC 2 cut(s) 111, 270
HinP1I GCGC 2 cut(s) 111, 270
HincII GTYRAC 2 cut(s) 223, 399
HindII GTYRAC 2 cut(s) 223, 399
HinfI GANTC 3 cut(s) 99, 143, 293
HpaII CCGG 5 cut(s) 120, 330, 334, 492, 619
Hpy166II GTNNAC 3 cut(s) 103, 223, 399
Hpy188I TCNGA 3 cut(s) 178, 234, 315
Hpy188III TCNNGA 3 cut(s) 290, 322, 492
Hpy8I GTNNAC 3 cut(s) 103, 223, 399
Hpy99I CGWCG 5 cut(s) 352, 376, 400, 461, 464
HpyAV CCTTC 3 cut(s) 219, 319, 595
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 96, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 162, 633
HpySE526I ACGT 1 cut(s) 350
Hsp92I GRCGYC 2 cut(s) 111, 350
Hsp92II CATG 4 cut(s) 139, 343, 592, 608
HspAI GCGC 2 cut(s) 111, 270
KasI GGCGCC 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 491
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 3 cut(s) 19, 494, 573
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 3 cut(s) 160, 542, 570
MaeI CTAG 3 cut(s) 273, 306, 600
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 452
MalI GATC 3 cut(s) 21, 496, 575
MbiI CCGCTC 1 cut(s) 125
MboI GATC 3 cut(s) 19, 494, 573
MboII GAAGA 6 cut(s) 34, 179, 278, 345, 482, 583
MhlI GDGCHC 3 cut(s) 313, 413, 447
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 1 cut(s) 317
MluNI TGGCCA 1 cut(s) 65
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 3 cut(s) 108, 152, 287
Mox20I TGGCCA 1 cut(s) 65
MroI TCCGGA 1 cut(s) 491
MroNI GCCGGC 1 cut(s) 329
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 5 cut(s) 120, 330, 334, 492, 619
MspR9I CCNGG 2 cut(s) 153, 620
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 122
NaeI GCCGGC 1 cut(s) 331
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 1 cut(s) 620
NdeII GATC 3 cut(s) 19, 494, 573
NgoMIV GCCGGC 1 cut(s) 329
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 4 cut(s) 139, 343, 592, 608
NlaIV GGNNCC 4 cut(s) 112, 129, 412, 444
NspI RCATGY 1 cut(s) 343
PciI ACATGT 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 291
PcsI WCGNNNNNNNCGW 5 cut(s) 371, 377, 386, 395, 503
PdiI GCCGGC 1 cut(s) 331
PkrI GCNGC 6 cut(s) 115, 118, 150, 269, 557, 560
PleI GAGTC 3 cut(s) 107, 151, 287
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 3 cut(s) 107, 151, 287
PscI ACATGT 1 cut(s) 339
PsiI TTATAA 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 4 cut(s) 112, 129, 412, 444
PspPI GGNCC 1 cut(s) 489
PstI CTGCAG 1 cut(s) 560
RigI GGCCGGCC 1 cut(s) 333
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 397
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 6 cut(s) 114, 117, 149, 268, 556, 559
Sau3AI GATC 3 cut(s) 19, 494, 573
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 3 cut(s) 108, 152, 287
ScrFI CCNGG 2 cut(s) 153, 620
SduI GDGCHC 3 cut(s) 313, 413, 447
SfcI CTRYAG 1 cut(s) 556
SfoI GGCGCC 1 cut(s) 112
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 317
SsiI CCGC 6 cut(s) 114, 117, 125, 267, 568, 616
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 3 cut(s) 273, 306, 600
StyD4I CCNGG 2 cut(s) 151, 618
StyI CCWWGG 2 cut(s) 66, 305
TaiI ACGT 1 cut(s) 353
TaqI TCGA 4 cut(s) 251, 296, 398, 506
TasI AATT 1 cut(s) 317
TauI GCSGC 3 cut(s) 116, 119, 270
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TseI GCWGC 3 cut(s) 148, 555, 558
TspDTI ATGAA 6 cut(s) 20, 124, 201, 345, 483, 577
TspGWI ACGGA 3 cut(s) 67, 120, 208
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 343
XmaJI CCTAGG 1 cut(s) 305
XmiI GTMKAC 2 cut(s) 102, 398
XspI CTAG 3 cut(s) 273, 306, 600
ZraI GACGTC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.