AT2G41050

PQ loop repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008046
Physical Location & Seq
Reverse (-)
17123182 .. 17126484
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41050.1

Sequence Viewer

Length: 1131 bp
ATGTTTCTCCACAGCAGTTTTAGAGATGGATTGTCATTGTCTCTTGGTATCATCAGTGTTATCAGTTGGGGTGTTGCTGAGATACCTCAGATTATGACTAATTACAGTGAGAAATCCACTGAAGGTCTCTCTATTACCTTCTTAACAACGTGGATGATTGGGGATATCTTCAATCTTCTTGGCTGCTTGATGGAACCAGCTACTCTTCCAACACAATTCTACATGGCACTGTTGTATACAGTGACTACATCAGTTCTCTATGTTCAATCTATATATTACGGCCATATCTACCCGCGGTTGAAAAACAGAAGAGATCAGATGGTTGAAGCAGAACGTATATCAAACATAATCAGCGATGTTAAAATTCCGGGCAGATGGAGAAATAGCTCTGATACTACTACTTGTGGTGGTCAAACCACACCTATCACTATGATTCCTGGGAGTCAACGAACTAGTTTTACCGGAAGAGAACTATTTTACACGTCGGCAAGATCTTTGTCGAGTAGTCATACACCACCAGCTGGATCTGTCTTAGCTCAGAGAATGGCTCGTGGTTACAGTGAACCAACTCTTGAAGAGCCCTTGCTTCCTGAGGATGTCACGCATCCTTCCACCAAATCATTGCTTTGCGTGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAACCTTCCCAATTTGCTAAGTGAATCAAGAACTATGGCTTTGGGTGAGGGAGATAGAGTATTTGTAGTTCGAGCAGCAAGAAAGCTTTTGCAGGTCACTAGCAGCAACGTAGCAGAACATAGCGGTGGAGAAAGCAGCAGAATTGGAATGTTTTTGGGTTGGGCAATGGCAGCCATATACATGGGTGGAAGGCTTCCCCAAATATGTCTCAATATGAGGAGAGGGCATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGCATTAGTTGGCAATATGACTTATGTTGCAAGCATACTCGTGAACAGTGTCGAATGGTTAAAACTTGCACCGAATCTACCATGGCTTGTTGATGCAGGAGGATGTGTTGTGCTTGATTTTCTTATTCTGCTTCAGTTTTTCCACTTCCGCTGTCGCAAAGACAAAGATACTGACAAGAAGAAGCATGAAACCGCAGAAGCTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

376

Amino Acids

41.81

Weight (kDa)

8.18

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 12 - 67 1.5e-18 PQ loop repeat
PQ-loop PF04193 270 - 327 9.8e-17 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 745
AccB7I CCANNNNNTGG 1 cut(s) 521
AccI GTMKAC 1 cut(s) 236
AccII CGCG 1 cut(s) 295
AciI CCGC 5 cut(s) 293, 295, 786, 1072, 1116
AclWI GGATC 1 cut(s) 532
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 2 cut(s) 141, 1040
AfiI CCNNNNNNNGG 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 7 cut(s) 172, 266, 301, 326, 575, 664, 904
AhlI ACTAGT 1 cut(s) 452
AjiI CACGTC 1 cut(s) 483
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 6 cut(s) 200, 387, 521, 536, 748, 1124
AluI AGCT 6 cut(s) 200, 387, 521, 536, 748, 1124
Alw26I GTCTC 4 cut(s) 45, 131, 640, 875
AlwI GGATC 1 cut(s) 532
AlwNI CAGNNNCTG 1 cut(s) 1124
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 5 cut(s) 183, 737, 765, 798, 833
ApoI RAATTY 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 719
AxyI CCTNAGG 1 cut(s) 591
BanII GRGCYC 1 cut(s) 582
BauI CACGAG 2 cut(s) 549, 962
BbvI GCAGC 5 cut(s) 170, 749, 777, 810, 845
BccI CCATC 4 cut(s) 20, 184, 313, 369
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 438
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 4 cut(s) 45, 131, 640, 875
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 2 cut(s) 453, 762
BfuAI ACCTGC 1 cut(s) 745
BglII AGATCT 1 cut(s) 491
BisI GCNGC 5 cut(s) 184, 738, 766, 799, 834
BlsI GCNGC 5 cut(s) 185, 739, 767, 800, 835
Bme1390I CCNGG 2 cut(s) 369, 438
BmgBI CACGTC 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 369, 438
BmsI GCATC 2 cut(s) 613, 1006
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpuMI CCSGG 1 cut(s) 369
BsaI GGTCTC 2 cut(s) 131, 640
BsaJI CCNNGG 3 cut(s) 293, 437, 1004
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 4 cut(s) 705, 735, 1014, 1044
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse21I CCTNAGG 1 cut(s) 591
Bse3DI GCAATG 2 cut(s) 620, 834
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 293, 437, 1004
BseGI GGATG 4 cut(s) 159, 601, 604, 1031
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMI GCAATG 2 cut(s) 620, 834
BseMII CTCAG 4 cut(s) 69, 101, 551, 582
BseRI GAGGAG 1 cut(s) 895
BseXI GCAGC 5 cut(s) 170, 749, 777, 810, 845
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 368, 462
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 4 cut(s) 45, 131, 640, 875
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 2 cut(s) 131, 640
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 3 cut(s) 313, 491, 524
Bsp19I CCATGG 1 cut(s) 1004
BspACI CCGC 5 cut(s) 293, 295, 786, 1072, 1116
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 4 cut(s) 70, 100, 550, 583
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 1 cut(s) 532
BspQI GCTCTTC 1 cut(s) 570
BspTNI GGTCTC 2 cut(s) 131, 640
BsrDI GCAATG 2 cut(s) 620, 834
BssECI CCNNGG 3 cut(s) 293, 437, 1004
BssMI GATC 3 cut(s) 313, 491, 524
BssNAI GTATAC 1 cut(s) 237
BssSI CACGAG 2 cut(s) 549, 962
BssT1I CCWWGG 1 cut(s) 1004
Bst1107I GTATAC 1 cut(s) 237
Bst2BI CACGAG 2 cut(s) 549, 962
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 5 cut(s) 107, 231, 241, 560, 971
Bst6I CTCTTC 4 cut(s) 210, 304, 460, 570
BstC8I GCNNGC 1 cut(s) 955
BstDEI CTNAG 6 cut(s) 78, 87, 532, 537, 591, 680
BstDSI CCRYGG 2 cut(s) 293, 1004
BstF5I GGATG 4 cut(s) 159, 601, 604, 1031
BstFNI CGCG 1 cut(s) 295
BstKTI GATC 3 cut(s) 316, 494, 527
BstMAI GTCTC 4 cut(s) 45, 131, 640, 875
BstMBI GATC 3 cut(s) 313, 491, 524
BstMWI GCNNNNNNNGC 1 cut(s) 833
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 893
BstSCI CCNGG 2 cut(s) 367, 436
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 5 cut(s) 170, 749, 777, 810, 845
BstX2I RGATCY 2 cut(s) 491, 524
BstXI CCANNNNNNTGG 1 cut(s) 844
BstYI RGATCY 2 cut(s) 491, 524
BstZ17I GTATAC 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 2 cut(s) 293, 1004
BtgZI GCGATG 1 cut(s) 369
BtrI CACGTC 1 cut(s) 483
BtsCI GGATG 4 cut(s) 159, 601, 604, 1031
BtsIMutI CAGTG 7 cut(s) 61, 112, 117, 227, 246, 565, 976
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 1 cut(s) 955
CaiI CAGNNNCTG 1 cut(s) 1124
Cfr42I CCGCGG 1 cut(s) 296
CviAII CATG 5 cut(s) 223, 844, 890, 1005, 1109
DdeI CTNAG 6 cut(s) 78, 87, 532, 537, 591, 680
DpnI GATC 3 cut(s) 315, 493, 526
DpnII GATC 3 cut(s) 313, 491, 524
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 4 cut(s) 210, 304, 460, 570
EarI CTCTTC 4 cut(s) 210, 304, 460, 570
Eco130I CCWWGG 1 cut(s) 1004
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 2 cut(s) 131, 640
Eco32I GATATC 1 cut(s) 166
Eco57I CTGAAG 2 cut(s) 141, 1040
Eco81I CCTNAGG 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 436
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 1004
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 1004
FaeI CATG 5 cut(s) 226, 847, 893, 1008, 1112
FatI CATG 5 cut(s) 222, 843, 889, 1004, 1108
FauI CCCGC 1 cut(s) 300
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 5 cut(s) 184, 738, 766, 799, 834
FokI GGATG 4 cut(s) 166, 591, 608, 1038
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 5 cut(s) 184, 738, 766, 799, 834
FspBI CTAG 2 cut(s) 453, 762
GluI GCNGC 5 cut(s) 184, 738, 766, 799, 834
HaeIII GGCC 1 cut(s) 282
HapII CCGG 2 cut(s) 368, 462
Hin1II CATG 5 cut(s) 226, 847, 893, 1008, 1112
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 5 cut(s) 433, 442, 686, 904, 997
HpaII CCGG 2 cut(s) 368, 462
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 4 cut(s) 237, 446, 563, 967
Hpy188I TCNGA 4 cut(s) 90, 318, 391, 540
Hpy188III TCNNGA 4 cut(s) 572, 590, 690, 964
Hpy8I GTNNAC 4 cut(s) 237, 446, 563, 967
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 5 cut(s) 116, 148, 618, 677, 846
HpyCH4III ACNGT 5 cut(s) 107, 231, 241, 560, 971
HpyCH4IV ACGT 4 cut(s) 149, 334, 482, 771
HpyCH4V TGCA 5 cut(s) 754, 926, 953, 992, 1019
HpyF10VI GCNNNNNNNGC 1 cut(s) 833
HpyF3I CTNAG 6 cut(s) 78, 87, 532, 537, 591, 680
HpySE526I ACGT 4 cut(s) 149, 334, 482, 771
Hsp92II CATG 5 cut(s) 226, 847, 893, 1008, 1112
KspI CCGCGG 1 cut(s) 296
Kzo9I GATC 3 cut(s) 313, 491, 524
LguI GCTCTTC 1 cut(s) 570
Lsp1109I GCAGC 5 cut(s) 170, 749, 777, 810, 845
LweI GCATC 2 cut(s) 613, 1006
MaeI CTAG 2 cut(s) 453, 762
MaeII ACGT 4 cut(s) 149, 334, 482, 771
MaeIII GTNAC 4 cut(s) 241, 554, 598, 757
MalI GATC 3 cut(s) 315, 493, 526
MboI GATC 3 cut(s) 313, 491, 524
MboII GAAGA 8 cut(s) 160, 167, 197, 321, 477, 587, 910, 1114
MflI RGATCY 2 cut(s) 491, 524
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 5 cut(s) 100, 215, 363, 673, 804
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 7 cut(s) 96, 586, 703, 873, 878, 889, 1016
MseI TTAA 3 cut(s) 143, 360, 983
MslI CAYNNNNRTG 3 cut(s) 786, 842, 962
MspA1I CMGCKG 3 cut(s) 295, 521, 1074
MspI CCGG 2 cut(s) 368, 462
MspR9I CCNGG 2 cut(s) 369, 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 1 cut(s) 833
NciI CCSGG 1 cut(s) 369
NcoI CCATGG 1 cut(s) 1004
NdeII GATC 3 cut(s) 313, 491, 524
NlaIII CATG 5 cut(s) 226, 847, 893, 1008, 1112
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 3 cut(s) 241, 598, 757
NspI RCATGY 1 cut(s) 893
PciSI GCTCTTC 1 cut(s) 570
PfeI GAWTC 4 cut(s) 433, 686, 904, 997
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 5 cut(s) 185, 739, 767, 800, 835
PleI GAGTC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 195
PsrI GAACNNNNNNTAC 4 cut(s) 442, 474, 714, 746
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 2 cut(s) 491, 524
PvuII CAGCTG 1 cut(s) 521
RseI CAYNNNNRTG 3 cut(s) 786, 842, 962
SacII CCGCGG 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 143, 360, 983
SatI GCNGC 5 cut(s) 184, 738, 766, 799, 834
Sau3AI GATC 3 cut(s) 313, 491, 524
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 2 cut(s) 369, 438
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 2 cut(s) 613, 1006
Sfr303I CCGCGG 1 cut(s) 296
SgrBI CCGCGG 1 cut(s) 296
SmiMI CAYNNNNRTG 3 cut(s) 786, 842, 962
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 5 cut(s) 100, 215, 363, 673, 804
SsiI CCGC 5 cut(s) 293, 295, 786, 1072, 1116
SspMI CTAG 2 cut(s) 453, 762
StyD4I CCNGG 2 cut(s) 367, 436
StyI CCWWGG 1 cut(s) 1004
TaaI ACNGT 5 cut(s) 107, 231, 241, 560, 971
TaiI ACGT 4 cut(s) 152, 337, 485, 774
TaqI TCGA 3 cut(s) 500, 733, 975
TasI AATT 5 cut(s) 100, 215, 363, 673, 804
TfiI GAWTC 4 cut(s) 433, 686, 904, 997
Tru1I TTAA 3 cut(s) 143, 360, 983
Tru9I TTAA 3 cut(s) 143, 360, 983
TscAI CASTG 7 cut(s) 61, 112, 124, 234, 246, 565, 976
TseFI GTSAC 3 cut(s) 241, 598, 757
TseI GCWGC 5 cut(s) 183, 737, 765, 798, 833
Tsp45I GTSAC 3 cut(s) 241, 598, 757
TspDTI ATGAA 1 cut(s) 1125
TspRI CASTG 7 cut(s) 61, 112, 124, 234, 246, 565, 976
Van91I CCANNNNNTGG 1 cut(s) 521
XapI RAATTY 1 cut(s) 363
XceI RCATGY 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 236
XspI CTAG 2 cut(s) 453, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.